CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = A231A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3231A231AA1049AsyngcTgcA2431440.5925933410-3412
ORF1ab/nsp3231A231AA1049AsyngcTgcC243970.3991773410-3412
ORF1ab/nsp3231A231AA1049AsyngcTgcG24320.008230453410-3412

Details of the mutation A231A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3231A231AgcTgcA144243All0.000028
ORF1ab/nsp3231A231AgcTgcC97243All0.000019
ORF1ab/nsp3231A231AgcTgcG2243All0
ORF1ab/nsp3231A231AgcTgcA5959B.1.20.00052
ORF1ab/nsp3231A231AgcTgcA1616B.1.2210.001137
ORF1ab/nsp3231A231AgcTgcA815B.1.1.70.000007
ORF1ab/nsp3231A231AgcTgcC715B.1.1.70.000006
ORF1ab/nsp3231A231AgcTgcA1112AY.1020.000292
ORF1ab/nsp3231A231AgcTgcC112AY.1020.000027
ORF1ab/nsp3231A231AgcTgcC1112AY.1030.000068
ORF1ab/nsp3231A231AgcTgcA112AY.1030.000006
ORF1ab/nsp3231A231AgcTgcA712B.1.617.20.000026
ORF1ab/nsp3231A231AgcTgcC512B.1.617.20.000019
ORF1ab/nsp3231A231AgcTgcC810AY.40.000012
ORF1ab/nsp3231A231AgcTgcA210AY.40.000003
ORF1ab/nsp3231A231AgcTgcC1010B.1.4290.000235
ORF1ab/nsp3231A231AgcTgcC99AY.440.000055
ORF1ab/nsp3231A231AgcTgcA69B.10.000055
ORF1ab/nsp3231A231AgcTgcC29B.10.000018
ORF1ab/nsp3231A231AgcTgcG19B.10.000009
ORF1ab/nsp3231A231AgcTgcC99B.1.1.2140.000499
ORF1ab/nsp3231A231AgcTgcC99B.1.3690.002567
ORF1ab/nsp3231A231AgcTgcA45AY.290.000063
ORF1ab/nsp3231A231AgcTgcC15AY.290.000016
ORF1ab/nsp3231A231AgcTgcC35AY.430.000013
ORF1ab/nsp3231A231AgcTgcA25AY.430.000009
ORF1ab/nsp3231A231AgcTgcC44AY.50.000083
ORF1ab/nsp3231A231AgcTgcA22AY.1180.000125
ORF1ab/nsp3231A231AgcTgcA12AY.390.000025
ORF1ab/nsp3231A231AgcTgcC12AY.390.000025
ORF1ab/nsp3231A231AgcTgcC12AY.680.000274
ORF1ab/nsp3231A231AgcTgcA12AY.680.000274
ORF1ab/nsp3231A231AgcTgcA22AY.990.002099
ORF1ab/nsp3231A231AgcTgcA22B.1.10.000036
ORF1ab/nsp3231A231AgcTgcA22B.1.36.170.000988
ORF1ab/nsp3231A231AgcTgcA22B.1.5960.000174
ORF1ab/nsp3231A231AgcTgcC22C.370.000232
ORF1ab/nsp3231A231AgcTgcA11A.50.001923
ORF1ab/nsp3231A231AgcTgcA11AY.1190.000035
ORF1ab/nsp3231A231AgcTgcC11AY.120.000316
ORF1ab/nsp3231A231AgcTgcC11AY.250.000006
ORF1ab/nsp3231A231AgcTgcC11AY.330.000067
ORF1ab/nsp3231A231AgcTgcA11AY.450.000122
ORF1ab/nsp3231A231AgcTgcC11AY.460.000104
ORF1ab/nsp3231A231AgcTgcA11AY.750.000056
ORF1ab/nsp3231A231AgcTgcC11AY.90.000068
ORF1ab/nsp3231A231AgcTgcA11AY.920.000287
ORF1ab/nsp3231A231AgcTgcA11B0.000128
ORF1ab/nsp3231A231AgcTgcA11B.1.1.1410.002012
ORF1ab/nsp3231A231AgcTgcG11B.1.1.150.013514
ORF1ab/nsp3231A231AgcTgcA11B.1.1.2400.004695
ORF1ab/nsp3231A231AgcTgcC11B.1.1.2940.001266
ORF1ab/nsp3231A231AgcTgcA11B.1.1.4090.002833
ORF1ab/nsp3231A231AgcTgcC11B.1.1470.000756
ORF1ab/nsp3231A231AgcTgcC11B.1.1570.002985
ORF1ab/nsp3231A231AgcTgcC11B.1.160.240.004425
ORF1ab/nsp3231A231AgcTgcA11B.1.177.160.000664
ORF1ab/nsp3231A231AgcTgcA11B.1.221.40.004167
ORF1ab/nsp3231A231AgcTgcA11B.1.2390.001221
ORF1ab/nsp3231A231AgcTgcA11B.1.2430.00007
ORF1ab/nsp3231A231AgcTgcA11B.1.258.170.000104
ORF1ab/nsp3231A231AgcTgcA11B.1.360.000146
ORF1ab/nsp3231A231AgcTgcC11B.1.3910.001127
ORF1ab/nsp3231A231AgcTgcC11B.1.5650.00081
ORF1ab/nsp3231A231AgcTgcA11B.1.5760.000907
ORF1ab/nsp3231A231AgcTgcC11B.1.6280.000352
ORF1ab/nsp3231A231AgcTgcC11B.1.6340.003425
ORF1ab/nsp3231A231AgcTgcC11P.10.000016