CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = A1878T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31878A1878TA2696TnonsynGcGAcA1680.58351-8353
ORF1ab/nsp31878A1878TA2696TnonsynGcgAcg1670.43758351-8353
ORF1ab/nsp31878A1878TA2696TnonsynGcGAcT1610.06258351-8353

Details of the mutation A1878T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31878A1878TGcGAcA816All0.000002
ORF1ab/nsp31878A1878TGcgAcg716All0.000001
ORF1ab/nsp31878A1878TGcGAcT116All0
ORF1ab/nsp31878A1878TGcGAcA12B.10.000009
ORF1ab/nsp31878A1878TGcgAcg12B.10.000009
ORF1ab/nsp31878A1878TGcgAcg12B.1.10.000018
ORF1ab/nsp31878A1878TGcGAcT12B.1.10.000018
ORF1ab/nsp31878A1878TGcGAcA22B.1.1.460.008734
ORF1ab/nsp31878A1878TGcgAcg22B.1.1.70.000002
ORF1ab/nsp31878A1878TGcgAcg11AY.39.10.00004
ORF1ab/nsp31878A1878TGcGAcA11AY.430.000004
ORF1ab/nsp31878A1878TGcGAcA11AY.440.000006
ORF1ab/nsp31878A1878TGcGAcA11AY.46.60.000072
ORF1ab/nsp31878A1878TGcGAcA11AY.9.20.000037
ORF1ab/nsp31878A1878TGcgAcg11B.1.1.5190.00004
ORF1ab/nsp31878A1878TGcgAcg11B.1.5900.004545
ORF1ab/nsp31878A1878TGcGAcA11B.1.617.20.000004