CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = A1872V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31872A1872VA2690VnonsyngCtgTt2177217718333-8335

Details of the mutation A1872V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31872A1872VgCtgTt21772177All0.000416
ORF1ab/nsp31872A1872VgCtgTt218218B.1.617.20.000821
ORF1ab/nsp31872A1872VgCtgTt178178B.1.1.70.000159
ORF1ab/nsp31872A1872VgCtgTt177177B.1.20.001559
ORF1ab/nsp31872A1872VgCtgTt142142B.1.5440.855422
ORF1ab/nsp31872A1872VgCtgTt122122B.1.2210.008666
ORF1ab/nsp31872A1872VgCtgTt118118B.1.4800.293532
ORF1ab/nsp31872A1872VgCtgTt108108AY.1000.004969
ORF1ab/nsp31872A1872VgCtgTt107107AY.40.000167
ORF1ab/nsp31872A1872VgCtgTt8989B.1.3960.062809
ORF1ab/nsp31872A1872VgCtgTt6969B.10.000632
ORF1ab/nsp31872A1872VgCtgTt5959AY.260.00167
ORF1ab/nsp31872A1872VgCtgTt4848AY.46.60.003466
ORF1ab/nsp31872A1872VgCtgTt4343B.1.1.250.024446
ORF1ab/nsp31872A1872VgCtgTt3737B.1.10.000671
ORF1ab/nsp31872A1872VgCtgTt3434AY.250.000205
ORF1ab/nsp31872A1872VgCtgTt3030B.1.428.21
ORF1ab/nsp31872A1872VgCtgTt2828AY.460.002914
ORF1ab/nsp31872A1872VgCtgTt2626B.1.1.390.013252
ORF1ab/nsp31872A1872VgCtgTt2525AY.1030.000155
ORF1ab/nsp31872A1872VgCtgTt2424AU.10.03038
ORF1ab/nsp31872A1872VgCtgTt2121B.1.1.3170.008646
ORF1ab/nsp31872A1872VgCtgTt1919B.1.1.630.00733
ORF1ab/nsp31872A1872VgCtgTt1818AY.440.00011
ORF1ab/nsp31872A1872VgCtgTt1818B.1.3510.000535
ORF1ab/nsp31872A1872VgCtgTt1717AY.980.001343
ORF1ab/nsp31872A1872VgCtgTt1616AY.30.000159
ORF1ab/nsp31872A1872VgCtgTt1515AY.430.000066
ORF1ab/nsp31872A1872VgCtgTt1515B.1.2400.003233
ORF1ab/nsp31872A1872VgCtgTt1515P.1.170.002426
ORF1ab/nsp31872A1872VgCtgTt1313B.1.160.200.116071
ORF1ab/nsp31872A1872VgCtgTt1313B.1.1770.000171
ORF1ab/nsp31872A1872VgCtgTt1313P.10.000205
ORF1ab/nsp31872A1872VgCtgTt1212B0.001534
ORF1ab/nsp31872A1872VgCtgTt1111AY.50.000227
ORF1ab/nsp31872A1872VgCtgTt1111B.1.1.3370.039568
ORF1ab/nsp31872A1872VgCtgTt1010B.1.5260.000235
ORF1ab/nsp31872A1872VgCtgTt99AY.1020.000239
ORF1ab/nsp31872A1872VgCtgTt99B.1.1.2940.011392
ORF1ab/nsp31872A1872VgCtgTt88B.1.4290.000188
ORF1ab/nsp31872A1872VgCtgTt88B.1.6350.140351
ORF1ab/nsp31872A1872VgCtgTt77AY.290.00011
ORF1ab/nsp31872A1872VgCtgTt66AM.40.021429
ORF1ab/nsp31872A1872VgCtgTt66AY.1200.000223
ORF1ab/nsp31872A1872VgCtgTt66B.1.258.170.000624
ORF1ab/nsp31872A1872VgCtgTt66B.1.5960.000523
ORF1ab/nsp31872A1872VgCtgTt66R.10.00054
ORF1ab/nsp31872A1872VgCtgTt55B.1.1.3160.004625
ORF1ab/nsp31872A1872VgCtgTt55B.1.438.10.000536
ORF1ab/nsp31872A1872VgCtgTt44AY.330.000267
ORF1ab/nsp31872A1872VgCtgTt44AY.470.000124
ORF1ab/nsp31872A1872VgCtgTt44B.1.1590.04878
ORF1ab/nsp31872A1872VgCtgTt44B.1.5760.003626
ORF1ab/nsp31872A1872VgCtgTt44B.1.6370.000292
ORF1ab/nsp31872A1872VgCtgTt44N.40.017021
ORF1ab/nsp31872A1872VgCtgTt33AY.190.003421
ORF1ab/nsp31872A1872VgCtgTt33AY.230.000209
ORF1ab/nsp31872A1872VgCtgTt33AY.270.000194
ORF1ab/nsp31872A1872VgCtgTt33AY.4.50.000322
ORF1ab/nsp31872A1872VgCtgTt33B.1.1.2140.000166
ORF1ab/nsp31872A1872VgCtgTt33B.1.1.2220.000612
ORF1ab/nsp31872A1872VgCtgTt33B.1.1.2980.002586
ORF1ab/nsp31872A1872VgCtgTt33B.1.1.3110.001074
ORF1ab/nsp31872A1872VgCtgTt33B.1.1.4340.001046
ORF1ab/nsp31872A1872VgCtgTt33B.1.1.5190.000119
ORF1ab/nsp31872A1872VgCtgTt33B.1.2580.0002
ORF1ab/nsp31872A1872VgCtgTt33B.1.6190.002613
ORF1ab/nsp31872A1872VgCtgTt22A.30.004193
ORF1ab/nsp31872A1872VgCtgTt22AY.1190.000071
ORF1ab/nsp31872A1872VgCtgTt22AY.160.000759
ORF1ab/nsp31872A1872VgCtgTt22AY.23.10.000835
ORF1ab/nsp31872A1872VgCtgTt22AY.320.001065
ORF1ab/nsp31872A1872VgCtgTt22AY.350.000466
ORF1ab/nsp31872A1872VgCtgTt22AY.4.20.000043
ORF1ab/nsp31872A1872VgCtgTt22AY.450.000243
ORF1ab/nsp31872A1872VgCtgTt22AY.500.001599
ORF1ab/nsp31872A1872VgCtgTt22AY.60.000082
ORF1ab/nsp31872A1872VgCtgTt22AY.750.000112
ORF1ab/nsp31872A1872VgCtgTt22AY.90.000135
ORF1ab/nsp31872A1872VgCtgTt22B.1.1.2250.014388
ORF1ab/nsp31872A1872VgCtgTt22B.1.1.2840.000215
ORF1ab/nsp31872A1872VgCtgTt22B.1.1.4200.002012
ORF1ab/nsp31872A1872VgCtgTt22B.1.1600.000062
ORF1ab/nsp31872A1872VgCtgTt22B.1.177.170.001642
ORF1ab/nsp31872A1872VgCtgTt22B.1.177.60.001953
ORF1ab/nsp31872A1872VgCtgTt22B.1.177.810.000379
ORF1ab/nsp31872A1872VgCtgTt22B.1.177.830.002963
ORF1ab/nsp31872A1872VgCtgTt22B.1.2220.003384
ORF1ab/nsp31872A1872VgCtgTt22B.1.2340.000264
ORF1ab/nsp31872A1872VgCtgTt22B.1.36.80.002
ORF1ab/nsp31872A1872VgCtgTt22B.1.4270.000101
ORF1ab/nsp31872A1872VgCtgTt22B.1.4710.005464
ORF1ab/nsp31872A1872VgCtgTt22B.1.6210.000177
ORF1ab/nsp31872A1872VgCtgTt22C.370.000232
ORF1ab/nsp31872A1872VgCtgTt22D.20.00015
ORF1ab/nsp31872A1872VgCtgTt11AD.20.000219
ORF1ab/nsp31872A1872VgCtgTt11AY.1010.00049
ORF1ab/nsp31872A1872VgCtgTt11AY.1060.000335
ORF1ab/nsp31872A1872VgCtgTt11AY.1170.000085
ORF1ab/nsp31872A1872VgCtgTt11AY.1180.000063
ORF1ab/nsp31872A1872VgCtgTt11AY.140.000088
ORF1ab/nsp31872A1872VgCtgTt11AY.240.000431
ORF1ab/nsp31872A1872VgCtgTt11AY.3.10.000085
ORF1ab/nsp31872A1872VgCtgTt11AY.34.10.00051
ORF1ab/nsp31872A1872VgCtgTt11AY.400.000964
ORF1ab/nsp31872A1872VgCtgTt11AY.46.50.000198
ORF1ab/nsp31872A1872VgCtgTt11AY.5.30.000337
ORF1ab/nsp31872A1872VgCtgTt11AY.540.000095
ORF1ab/nsp31872A1872VgCtgTt11AY.550.000917
ORF1ab/nsp31872A1872VgCtgTt11AY.590.00053
ORF1ab/nsp31872A1872VgCtgTt11AY.610.000105
ORF1ab/nsp31872A1872VgCtgTt11AY.620.000436
ORF1ab/nsp31872A1872VgCtgTt11AY.650.000533
ORF1ab/nsp31872A1872VgCtgTt11AY.710.000475
ORF1ab/nsp31872A1872VgCtgTt11AY.720.001361
ORF1ab/nsp31872A1872VgCtgTt11AY.75.10.00018
ORF1ab/nsp31872A1872VgCtgTt11AY.810.001992
ORF1ab/nsp31872A1872VgCtgTt11AY.9.10.000084
ORF1ab/nsp31872A1872VgCtgTt11AY.9.20.000037
ORF1ab/nsp31872A1872VgCtgTt11AY.98.10.000048
ORF1ab/nsp31872A1872VgCtgTt11AZ.50.003509
ORF1ab/nsp31872A1872VgCtgTt11B.1.1.1710.003676
ORF1ab/nsp31872A1872VgCtgTt11B.1.1.1810.004545
ORF1ab/nsp31872A1872VgCtgTt11B.1.1.2160.00089
ORF1ab/nsp31872A1872VgCtgTt11B.1.1.280.000311
ORF1ab/nsp31872A1872VgCtgTt11B.1.1.2910.000742
ORF1ab/nsp31872A1872VgCtgTt11B.1.1.3060.000438
ORF1ab/nsp31872A1872VgCtgTt11B.1.1.3150.008475
ORF1ab/nsp31872A1872VgCtgTt11B.1.1.330.000421
ORF1ab/nsp31872A1872VgCtgTt11B.1.1.3680.003086
ORF1ab/nsp31872A1872VgCtgTt11B.1.1.4090.002833
ORF1ab/nsp31872A1872VgCtgTt11B.1.1.4480.002033
ORF1ab/nsp31872A1872VgCtgTt11B.1.1.450.014085
ORF1ab/nsp31872A1872VgCtgTt11B.1.177.210.000076
ORF1ab/nsp31872A1872VgCtgTt11B.1.177.570.000281
ORF1ab/nsp31872A1872VgCtgTt11B.1.177.710.010101
ORF1ab/nsp31872A1872VgCtgTt11B.1.2390.001221
ORF1ab/nsp31872A1872VgCtgTt11B.1.2430.00007
ORF1ab/nsp31872A1872VgCtgTt11B.1.258.70.001912
ORF1ab/nsp31872A1872VgCtgTt11B.1.3050.002151
ORF1ab/nsp31872A1872VgCtgTt11B.1.36.370.002778
ORF1ab/nsp31872A1872VgCtgTt11B.1.3690.000285
ORF1ab/nsp31872A1872VgCtgTt11B.1.3820.008929
ORF1ab/nsp31872A1872VgCtgTt11B.1.4160.001269
ORF1ab/nsp31872A1872VgCtgTt11B.1.4240.008065
ORF1ab/nsp31872A1872VgCtgTt11B.1.466.20.000391
ORF1ab/nsp31872A1872VgCtgTt11B.1.4990.00105
ORF1ab/nsp31872A1872VgCtgTt11B.1.5210.004975
ORF1ab/nsp31872A1872VgCtgTt11B.1.5770.000687
ORF1ab/nsp31872A1872VgCtgTt11B.1.5800.004065
ORF1ab/nsp31872A1872VgCtgTt11B.1.5900.004545
ORF1ab/nsp31872A1872VgCtgTt11B.1.5990.00365
ORF1ab/nsp31872A1872VgCtgTt11B.1.6230.000536
ORF1ab/nsp31872A1872VgCtgTt11B.1.6270.00202
ORF1ab/nsp31872A1872VgCtgTt11B.200.023256
ORF1ab/nsp31872A1872VgCtgTt11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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