CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = A1739T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31739A1739TA2557TnonsynGcgAcg1741720.9885067934-7936
ORF1ab/nsp31739A1739TA2557TnonsynGcGAcA17420.01149437934-7936

Details of the mutation A1739T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31739A1739TGcgAcg172174All0.000033
ORF1ab/nsp31739A1739TGcGAcA2174All0
ORF1ab/nsp31739A1739TGcgAcg6060AY.1030.000373
ORF1ab/nsp31739A1739TGcgAcg2222B.1.1.70.00002
ORF1ab/nsp31739A1739TGcgAcg2020AY.40.000031
ORF1ab/nsp31739A1739TGcgAcg1919AY.440.000116
ORF1ab/nsp31739A1739TGcgAcg99AY.250.000054
ORF1ab/nsp31739A1739TGcgAcg88AY.290.000126
ORF1ab/nsp31739A1739TGcgAcg44AY.200.000155
ORF1ab/nsp31739A1739TGcgAcg33AY.430.000013
ORF1ab/nsp31739A1739TGcgAcg33AY.9.20.00011
ORF1ab/nsp31739A1739TGcgAcg33B.1.10.000054
ORF1ab/nsp31739A1739TGcgAcg33B.1.177.210.000229
ORF1ab/nsp31739A1739TGcgAcg33B.1.177.790.007026
ORF1ab/nsp31739A1739TGcgAcg33B.1.617.20.000011
ORF1ab/nsp31739A1739TGcgAcg120.055556
ORF1ab/nsp31739A1739TGcGAcA120.055556
ORF1ab/nsp31739A1739TGcgAcg22B.1.20.000018
ORF1ab/nsp31739A1739TGcgAcg11AY.1000.000046
ORF1ab/nsp31739A1739TGcgAcg11AY.1020.000027
ORF1ab/nsp31739A1739TGcgAcg11AY.1070.000466
ORF1ab/nsp31739A1739TGcgAcg11AY.790.001211
ORF1ab/nsp31739A1739TGcgAcg11B.1.1.3890.006061
ORF1ab/nsp31739A1739TGcgAcg11B.1.177.810.000189
ORF1ab/nsp31739A1739TGcGAcA11B.1.2580.000067
ORF1ab/nsp31739A1739TGcgAcg11B.1.4280.00102
ORF1ab/nsp31739A1739TGcgAcg11B.1.6270.00202
ORF1ab/nsp31739A1739TGcgAcg11P.1.140.000048