CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = A1736V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31736A1736VA2554VnonsyngCagTa1541591541570.9999877925-7927
ORF1ab/nsp31736A1736VA2554VnonsyngCAgTG15415910.000006486817925-7927
ORF1ab/nsp31736A1736VA2554VnonsyngCAgTC15415910.000006486817925-7927

Details of the mutation A1736V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31736A1736VgCagTa154157154159All0.029484
ORF1ab/nsp31736A1736VgCAgTC1154159All0
ORF1ab/nsp31736A1736VgCAgTG1154159All0
ORF1ab/nsp31736A1736VgCagTa133178133179AY.440.810623
ORF1ab/nsp31736A1736VgCAgTC1133179AY.440.000006
ORF1ab/nsp31736A1736VgCagTa1009910099B.1.617.20.038027
ORF1ab/nsp31736A1736VgCagTa33863386B.1.177.570.951391
ORF1ab/nsp31736A1736VgCagTa14191419B.1.177.560.947263
ORF1ab/nsp31736A1736VgCagTa14071407B.1.1.70.00126
ORF1ab/nsp31736A1736VgCagTa607607AY.650.323561
ORF1ab/nsp31736A1736VgCagTa491491AY.1030.003049
ORF1ab/nsp31736A1736VgCagTa482482AY.40.00075
ORF1ab/nsp31736A1736VgCagTa265265B.1.20.002333
ORF1ab/nsp31736A1736VgCagTa212212AY.430.000939
ORF1ab/nsp31736A1736VgCagTa183183AY.250.001101
ORF1ab/nsp31736A1736VgCagTa121121AY.1170.010227
ORF1ab/nsp31736A1736VgCagTa107107B.10.00098
ORF1ab/nsp31736A1736VgCagTa9999AY.390.002446
ORF1ab/nsp31736A1736VgCagTa7676AY.98.10.003681
ORF1ab/nsp31736A1736VgCagTa7373AY.9.20.002681
ORF1ab/nsp31736A1736VgCagTa6666P.10.00104
ORF1ab/nsp31736A1736VgCagTa6464B.1.1.2740.323232
ORF1ab/nsp31736A1736VgCagTa5656AY.30.000557
ORF1ab/nsp31736A1736VgCagTa5353B.1.1770.000698
ORF1ab/nsp31736A1736VgCagTa5252C.370.006035
ORF1ab/nsp31736A1736VgCagTa5050AY.50.001032
ORF1ab/nsp31736A1736VgCagTa4949AY.340.004751
ORF1ab/nsp31736A1736VgCagTa4848B.1.177.540.029109
ORF1ab/nsp31736A1736VgCagTa4242AY.750.002353
ORF1ab/nsp31736A1736VgCagTa4242B.1.10.000762
ORF1ab/nsp31736A1736VgCagTa4242B.1.4290.000988
ORF1ab/nsp31736A1736VgCagTa3838AY.450.004624
ORF1ab/nsp31736A1736VgCagTa3535AY.1020.000928
ORF1ab/nsp31736A1736VgCagTa3535AY.460.003643
ORF1ab/nsp31736A1736VgCagTa3535B.1.1.5190.00139
ORF1ab/nsp31736A1736VgCagTa3434AY.260.000963
ORF1ab/nsp31736A1736VgCagTa3232AY.1000.001472
ORF1ab/nsp31736A1736VgCagTa2929AY.470.000902
ORF1ab/nsp31736A1736VgCagTa2828AY.920.008044
ORF1ab/nsp31736A1736VgCagTa2727AY.1190.000953
ORF1ab/nsp31736A1736VgCagTa2727AY.4.20.000586
ORF1ab/nsp31736A1736VgCagTa2525AY.230.001744
ORF1ab/nsp31736A1736VgCagTa2525AY.640.014881
ORF1ab/nsp31736A1736VgCagTa2424AY.200.000933
ORF1ab/nsp31736A1736VgCagTa2424AY.90.001622
ORF1ab/nsp31736A1736VgCagTa2424AY.99.20.002212
ORF1ab/nsp31736A1736VgCagTa2424B.1.1600.000749
ORF1ab/nsp31736A1736VgCagTa2121AY.46.60.001516
ORF1ab/nsp31736A1736VgCagTa2121B.1.36.190.194444
ORF1ab/nsp31736A1736VgCagTa2020AY.710.009501
ORF1ab/nsp31736A1736VgCagTa1919AY.60.000781
ORF1ab/nsp31736A1736VgCagTa1818AY.540.001716
ORF1ab/nsp31736A1736VgCagTa1818B.1.177.190.025751
ORF1ab/nsp31736A1736VgCagTa1717AY.1140.003929
ORF1ab/nsp31736A1736VgCagTa1717AY.290.000268
ORF1ab/nsp31736A1736VgCagTa1717B.1.3510.000505
ORF1ab/nsp31736A1736VgCagTa1616B.1.5260.000376
ORF1ab/nsp31736A1736VgCagTa1616B.400.005829
ORF1ab/nsp31736A1736VgCagTa1515B.1.5250.001697
ORF1ab/nsp31736A1736VgCagTa1414AY.1180.000877
ORF1ab/nsp31736A1736VgCagTa1414AY.240.006034
ORF1ab/nsp31736A1736VgCagTa1414B.1.2210.000994
ORF1ab/nsp31736A1736VgCagTa1313AY.910.009496
ORF1ab/nsp31736A1736VgCagTa1313AY.930.00355
ORF1ab/nsp31736A1736VgCagTa1313B.1.6210.001151
ORF1ab/nsp31736A1736VgCagTa1212AY.75.10.002164
ORF1ab/nsp31736A1736VgCagTa1212B.1.5960.001046
ORF1ab/nsp31736A1736VgCagTa1111AY.1210.001488
ORF1ab/nsp31736A1736VgCagTa1111AY.39.10.000436
ORF1ab/nsp31736A1736VgCagTa1111AY.420.000443
ORF1ab/nsp31736A1736VgCagTa1111AY.99.10.017081
ORF1ab/nsp31736A1736VgCagTa1111B.1.4270.000555
ORF1ab/nsp31736A1736VgCagTa1010AY.360.001482
ORF1ab/nsp31736A1736VgCagTa1010B.1.2400.002156
ORF1ab/nsp31736A1736VgCagTa1010B.1.466.20.003912
ORF1ab/nsp31736A1736VgCagTa99AY.3.10.000767
ORF1ab/nsp31736A1736VgCagTa99B.1.1.10.00294
ORF1ab/nsp31736A1736VgCagTa99B.1.1.500.00611
ORF1ab/nsp31736A1736VgCagTa88AY.1200.000297
ORF1ab/nsp31736A1736VgCagTa88AY.130.001288
ORF1ab/nsp31736A1736VgCagTa88AY.4.40.003273
ORF1ab/nsp31736A1736VgCagTa88B.1.160.70.016632
ORF1ab/nsp31736A1736VgCagTa78B.1.617.10.000903
ORF1ab/nsp31736A1736VgCAgTG18B.1.617.10.000129
ORF1ab/nsp31736A1736VgCagTa77AY.1130.000997
ORF1ab/nsp31736A1736VgCagTa77AY.270.000453
ORF1ab/nsp31736A1736VgCagTa77AY.7.20.003915
ORF1ab/nsp31736A1736VgCagTa77AY.980.000553
ORF1ab/nsp31736A1736VgCagTa77B.1.177.120.001062
ORF1ab/nsp31736A1736VgCagTa77B.1.416.10.010937
ORF1ab/nsp31736A1736VgCagTa77Q.10.000884
ORF1ab/nsp31736A1736VgCagTa66AY.330.000401
ORF1ab/nsp31736A1736VgCagTa66B0.000767
ORF1ab/nsp31736A1736VgCagTa66B.1.1.2220.001224
ORF1ab/nsp31736A1736VgCagTa66B.1.2320.003224
ORF1ab/nsp31736A1736VgCagTa66B.1.2430.000418
ORF1ab/nsp31736A1736VgCagTa66B.1.360.000875
ORF1ab/nsp31736A1736VgCagTa66B.1.36.290.003104
ORF1ab/nsp31736A1736VgCagTa66B.1.36.310.010508
ORF1ab/nsp31736A1736VgCagTa66B.1.3690.001711
ORF1ab/nsp31736A1736VgCagTa66B.30.004983
ORF1ab/nsp31736A1736VgCagTa66P.1.150.001394
ORF1ab/nsp31736A1736VgCagTa66R.10.00054
ORF1ab/nsp31736A1736VgCagTa55A.2.50.002495
ORF1ab/nsp31736A1736VgCagTa55AY.1160.001434
ORF1ab/nsp31736A1736VgCagTa55AY.46.50.000992
ORF1ab/nsp31736A1736VgCagTa55B.1.1.2840.000537
ORF1ab/nsp31736A1736VgCagTa55B.1.177.210.000382
ORF1ab/nsp31736A1736VgCagTa55B.1.177.80.003762
ORF1ab/nsp31736A1736VgCagTa55B.1.3110.001373
ORF1ab/nsp31736A1736VgCagTa55B.1.4000.002145
ORF1ab/nsp31736A1736VgCagTa55P.1.20.00578
ORF1ab/nsp31736A1736VgCagTa44AY.1010.001962
ORF1ab/nsp31736A1736VgCagTa44AY.1050.002572
ORF1ab/nsp31736A1736VgCagTa44AY.350.000932
ORF1ab/nsp31736A1736VgCagTa44AY.610.000419
ORF1ab/nsp31736A1736VgCagTa44AY.620.001743
ORF1ab/nsp31736A1736VgCagTa44B.1.1.2040.012158
ORF1ab/nsp31736A1736VgCagTa44B.1.1.2140.000222
ORF1ab/nsp31736A1736VgCagTa44B.1.1.3060.001754
ORF1ab/nsp31736A1736VgCagTa44B.1.177.730.002265
ORF1ab/nsp31736A1736VgCagTa44B.1.177.820.001909
ORF1ab/nsp31736A1736VgCagTa44B.1.36.180.001681
ORF1ab/nsp31736A1736VgCagTa44B.1.5750.001214
ORF1ab/nsp31736A1736VgCagTa44B.1.6280.001409
ORF1ab/nsp31736A1736VgCagTa44C.360.003643
ORF1ab/nsp31736A1736VgCagTa44C.36.30.002269
ORF1ab/nsp31736A1736VgCagTa44P.1.140.000191
ORF1ab/nsp31736A1736VgCagTa33AY.1070.001398
ORF1ab/nsp31736A1736VgCagTa33AY.1100.000338
ORF1ab/nsp31736A1736VgCagTa33AY.140.000264
ORF1ab/nsp31736A1736VgCagTa33AY.46.20.001906
ORF1ab/nsp31736A1736VgCagTa33AY.510.002727
ORF1ab/nsp31736A1736VgCagTa33AY.670.001393
ORF1ab/nsp31736A1736VgCagTa33AY.680.000821
ORF1ab/nsp31736A1736VgCagTa33AY.9.2.10.005929
ORF1ab/nsp31736A1736VgCagTa33AY.960.006224
ORF1ab/nsp31736A1736VgCagTa33B.1.1.280.000934
ORF1ab/nsp31736A1736VgCagTa33B.1.1.2940.003797
ORF1ab/nsp31736A1736VgCagTa33B.1.1.3260.005282
ORF1ab/nsp31736A1736VgCagTa33B.1.1.3690.001339
ORF1ab/nsp31736A1736VgCagTa33B.1.110.30.002155
ORF1ab/nsp31736A1736VgCagTa33B.1.2340.000396
ORF1ab/nsp31736A1736VgCagTa33B.1.2650.003812
ORF1ab/nsp31736A1736VgCagTa33B.1.2680.03125
ORF1ab/nsp31736A1736VgCagTa33B.1.36.10.003421
ORF1ab/nsp31736A1736VgCagTa33B.1.5760.00272
ORF1ab/nsp31736A1736VgCagTa33B.60.00273
ORF1ab/nsp31736A1736VgCagTa33P.1.160.001122
ORF1ab/nsp31736A1736VgCagTa22A0.000774
ORF1ab/nsp31736A1736VgCagTa22AE.80.000978
ORF1ab/nsp31736A1736VgCagTa22AY.100.00106
ORF1ab/nsp31736A1736VgCagTa22AY.116.10.000623
ORF1ab/nsp31736A1736VgCagTa22AY.120.000632
ORF1ab/nsp31736A1736VgCagTa22AY.23.10.000835
ORF1ab/nsp31736A1736VgCagTa22AY.320.001065
ORF1ab/nsp31736A1736VgCagTa22AY.4.50.000215
ORF1ab/nsp31736A1736VgCagTa22AY.5.40.000553
ORF1ab/nsp31736A1736VgCagTa22AY.570.001312
ORF1ab/nsp31736A1736VgCagTa22AY.590.001059
ORF1ab/nsp31736A1736VgCagTa22AY.700.000417
ORF1ab/nsp31736A1736VgCagTa22AY.840.000875
ORF1ab/nsp31736A1736VgCagTa22AY.860.00166
ORF1ab/nsp31736A1736VgCagTa22AY.900.001369
ORF1ab/nsp31736A1736VgCagTa22B.1.1.1410.004024
ORF1ab/nsp31736A1736VgCagTa22B.1.1.1760.000879
ORF1ab/nsp31736A1736VgCagTa22B.1.1.2200.003717
ORF1ab/nsp31736A1736VgCagTa22B.1.1.250.001137
ORF1ab/nsp31736A1736VgCagTa22B.1.1.3110.000716
ORF1ab/nsp31736A1736VgCagTa22B.1.1.3170.000823
ORF1ab/nsp31736A1736VgCagTa22B.1.1.5230.003125
ORF1ab/nsp31736A1736VgCagTa22B.1.1.630.000772
ORF1ab/nsp31736A1736VgCagTa22B.1.177.160.001329
ORF1ab/nsp31736A1736VgCagTa22B.1.177.200.003035
ORF1ab/nsp31736A1736VgCagTa22B.1.177.600.000437
ORF1ab/nsp31736A1736VgCagTa22B.1.177.870.001456
ORF1ab/nsp31736A1736VgCagTa22B.1.2060.001631
ORF1ab/nsp31736A1736VgCagTa22B.1.214.10.04
ORF1ab/nsp31736A1736VgCagTa22B.1.351.20.000605
ORF1ab/nsp31736A1736VgCagTa22B.1.4160.002538
ORF1ab/nsp31736A1736VgCagTa22B.1.438.10.000215
ORF1ab/nsp31736A1736VgCagTa22B.1.5650.001621
ORF1ab/nsp31736A1736VgCagTa22B.1.5950.000522
ORF1ab/nsp31736A1736VgCagTa22L.30.007092
ORF1ab/nsp31736A1736VgCagTa22N.60.014184
ORF1ab/nsp31736A1736VgCagTa22P.1.100.000539
ORF1ab/nsp31736A1736VgCagTa22P.1.170.000324
ORF1ab/nsp31736A1736VgCagTa11A.23.10.000704
ORF1ab/nsp31736A1736VgCagTa11AD.20.000219
ORF1ab/nsp31736A1736VgCagTa11AM.20.111111
ORF1ab/nsp31736A1736VgCagTa11AY.10.000396
ORF1ab/nsp31736A1736VgCagTa11AY.1060.000335
ORF1ab/nsp31736A1736VgCagTa11AY.1110.000183
ORF1ab/nsp31736A1736VgCagTa11AY.1150.005208
ORF1ab/nsp31736A1736VgCagTa11AY.120.10.000321
ORF1ab/nsp31736A1736VgCagTa11AY.160.00038
ORF1ab/nsp31736A1736VgCagTa11AY.34.10.00051
ORF1ab/nsp31736A1736VgCagTa11AY.380.000499
ORF1ab/nsp31736A1736VgCagTa11AY.39.20.001541
ORF1ab/nsp31736A1736VgCagTa11AY.400.000964
ORF1ab/nsp31736A1736VgCagTa11AY.46.30.000934
ORF1ab/nsp31736A1736VgCagTa11AY.46.40.000165
ORF1ab/nsp31736A1736VgCagTa11AY.480.000465
ORF1ab/nsp31736A1736VgCagTa11AY.5.30.000337
ORF1ab/nsp31736A1736VgCagTa11AY.520.000814
ORF1ab/nsp31736A1736VgCagTa11AY.560.001605
ORF1ab/nsp31736A1736VgCagTa11AY.600.000938
ORF1ab/nsp31736A1736VgCagTa11AY.70.000196
ORF1ab/nsp31736A1736VgCagTa11AY.730.000665
ORF1ab/nsp31736A1736VgCagTa11AY.740.000116
ORF1ab/nsp31736A1736VgCagTa11AY.770.001127
ORF1ab/nsp31736A1736VgCagTa11AY.790.001211
ORF1ab/nsp31736A1736VgCagTa11AY.850.000427
ORF1ab/nsp31736A1736VgCagTa11AY.880.000884
ORF1ab/nsp31736A1736VgCagTa11AY.950.000761
ORF1ab/nsp31736A1736VgCagTa11B.1.1.1890.001513
ORF1ab/nsp31736A1736VgCagTa11B.1.1.2070.001182
ORF1ab/nsp31736A1736VgCagTa11B.1.1.2260.005814
ORF1ab/nsp31736A1736VgCagTa11B.1.1.330.000421
ORF1ab/nsp31736A1736VgCagTa11B.1.1.3850.004464
ORF1ab/nsp31736A1736VgCagTa11B.1.1.390.00051
ORF1ab/nsp31736A1736VgCagTa11B.1.1.4130.006897
ORF1ab/nsp31736A1736VgCagTa11B.1.1.4160.000905
ORF1ab/nsp31736A1736VgCagTa11B.1.1.4340.000349
ORF1ab/nsp31736A1736VgCagTa11B.1.1.4480.002033
ORF1ab/nsp31736A1736VgCagTa11B.1.1.5120.028571
ORF1ab/nsp31736A1736VgCagTa11B.1.1.5260.003546
ORF1ab/nsp31736A1736VgCagTa11B.1.1110.001175
ORF1ab/nsp31736A1736VgCagTa11B.1.160.110.005714
ORF1ab/nsp31736A1736VgCagTa11B.1.160.160.000929
ORF1ab/nsp31736A1736VgCagTa11B.1.177.110.001698
ORF1ab/nsp31736A1736VgCagTa11B.1.177.150.000631
ORF1ab/nsp31736A1736VgCagTa11B.1.177.180.00116
ORF1ab/nsp31736A1736VgCagTa11B.1.177.240.001295
ORF1ab/nsp31736A1736VgCagTa11B.1.177.300.002513
ORF1ab/nsp31736A1736VgCagTa11B.1.177.40.000211
ORF1ab/nsp31736A1736VgCagTa11B.1.177.420.000894
ORF1ab/nsp31736A1736VgCagTa11B.1.177.490.037037
ORF1ab/nsp31736A1736VgCagTa11B.1.177.550.002331
ORF1ab/nsp31736A1736VgCagTa11B.1.177.580.001332
ORF1ab/nsp31736A1736VgCagTa11B.1.177.70.000165
ORF1ab/nsp31736A1736VgCagTa11B.1.177.760.002494
ORF1ab/nsp31736A1736VgCagTa11B.1.177.860.000183
ORF1ab/nsp31736A1736VgCagTa11B.1.1990.004132
ORF1ab/nsp31736A1736VgCagTa11B.1.2410.000812
ORF1ab/nsp31736A1736VgCagTa11B.1.2580.000067
ORF1ab/nsp31736A1736VgCagTa11B.1.2980.002114
ORF1ab/nsp31736A1736VgCagTa11B.1.3350.010309
ORF1ab/nsp31736A1736VgCagTa11B.1.3550.011111
ORF1ab/nsp31736A1736VgCagTa11B.1.3560.001727
ORF1ab/nsp31736A1736VgCagTa11B.1.36.170.000494
ORF1ab/nsp31736A1736VgCagTa11B.1.36.360.000602
ORF1ab/nsp31736A1736VgCagTa11B.1.36.390.002217
ORF1ab/nsp31736A1736VgCagTa11B.1.4220.000812
ORF1ab/nsp31736A1736VgCagTa11B.1.4260.001009
ORF1ab/nsp31736A1736VgCagTa11B.1.4690.00361
ORF1ab/nsp31736A1736VgCagTa11B.1.5400.009709
ORF1ab/nsp31736A1736VgCagTa11B.1.5640.000426
ORF1ab/nsp31736A1736VgCagTa11B.1.5800.004065
ORF1ab/nsp31736A1736VgCagTa11B.1.5820.000491
ORF1ab/nsp31736A1736VgCagTa11B.1.5890.007576
ORF1ab/nsp31736A1736VgCagTa11B.1.6370.000073
ORF1ab/nsp31736A1736VgCagTa11B.1.970.025641
ORF1ab/nsp31736A1736VgCagTa11B.6.50.076923
ORF1ab/nsp31736A1736VgCagTa11C.37.10.002618
ORF1ab/nsp31736A1736VgCagTa11C.390.018868
ORF1ab/nsp31736A1736VgCagTa11D.20.000075
ORF1ab/nsp31736A1736VgCagTa11P.1.120.000484
ORF1ab/nsp31736A1736VgCagTa11Q.70.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.