CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = A1557del1

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31557A1557del1A2375del1delgCcg-c25160.647388-7390
ORF1ab/nsp31557A1557del1A2375del1delgcCgc-2560.247388-7390
ORF1ab/nsp31557A1557del1A2375del1delGcc-cc2510.047388-7390
ORF1ab/nsp31557A1557del1A2375del1delgCCg-A2510.047388-7390
ORF1ab/nsp31557A1557del1A2375del1delgCCgY-2510.047388-7390

Details of the mutation A1557del1 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31557A1557del1gCcg-c1625All0.000003
ORF1ab/nsp31557A1557del1gcCgc-625All0.000001
ORF1ab/nsp31557A1557del1gCCgY-125All0
ORF1ab/nsp31557A1557del1Gcc-cc125All0
ORF1ab/nsp31557A1557del1gCCg-A125All0
ORF1ab/nsp31557A1557del1gCcg-c38B.1.1.70.000003
ORF1ab/nsp31557A1557del1gcCgc-38B.1.1.70.000003
ORF1ab/nsp31557A1557del1Gcc-cc18B.1.1.70.000001
ORF1ab/nsp31557A1557del1gCCgY-18B.1.1.70.000001
ORF1ab/nsp31557A1557del1gCcg-c34B.10.000027
ORF1ab/nsp31557A1557del1gcCgc-14B.10.000009
ORF1ab/nsp31557A1557del1gCcg-c33B.1.617.10.000387
ORF1ab/nsp31557A1557del1gCcg-c22B.1.20.000018
ORF1ab/nsp31557A1557del1gCcg-c11AY.160.00038
ORF1ab/nsp31557A1557del1gCcg-c11AY.9.20.000037
ORF1ab/nsp31557A1557del1gcCgc-11B.1.1.3110.000358
ORF1ab/nsp31557A1557del1gcCgc-11B.1.1.3150.008475
ORF1ab/nsp31557A1557del1gCcg-c11B.1.3260.007576
ORF1ab/nsp31557A1557del1gCcg-c11B.1.36.100.004785
ORF1ab/nsp31557A1557del1gCcg-c11B.1.4680.005714
ORF1ab/nsp31557A1557del1gCCg-A11B.1.617.20.000004