CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = A1557S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31557A1557SA2375SnonsynGccTcc74720.9729737388-7390
ORF1ab/nsp31557A1557SA2375SnonsynGcCTcT7420.0270277388-7390

Details of the mutation A1557S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31557A1557SGccTcc7274All0.000014
ORF1ab/nsp31557A1557SGcCTcT274All0
ORF1ab/nsp31557A1557SGccTcc3030B.1.10.000544
ORF1ab/nsp31557A1557SGccTcc88B.1.617.20.00003
ORF1ab/nsp31557A1557SGccTcc460.222222
ORF1ab/nsp31557A1557SGcCTcT260.111111
ORF1ab/nsp31557A1557SGccTcc66AY.34.10.00306
ORF1ab/nsp31557A1557SGccTcc33AY.430.000013
ORF1ab/nsp31557A1557SGccTcc33B.1.1.70.000003
ORF1ab/nsp31557A1557SGccTcc22AY.610.00021
ORF1ab/nsp31557A1557SGccTcc22B.10.000018
ORF1ab/nsp31557A1557SGccTcc11AY.1020.000027
ORF1ab/nsp31557A1557SGccTcc11AY.1170.000085
ORF1ab/nsp31557A1557SGccTcc11AY.250.000006
ORF1ab/nsp31557A1557SGccTcc11AY.30.00001
ORF1ab/nsp31557A1557SGccTcc11AY.330.000067
ORF1ab/nsp31557A1557SGccTcc11AY.40.000002
ORF1ab/nsp31557A1557SGccTcc11AY.4.40.000409
ORF1ab/nsp31557A1557SGccTcc11AY.450.000122
ORF1ab/nsp31557A1557SGccTcc11B.1.1.5190.00004
ORF1ab/nsp31557A1557SGccTcc11B.1.1770.000013
ORF1ab/nsp31557A1557SGccTcc11B.1.20.000009
ORF1ab/nsp31557A1557SGccTcc11B.1.2650.001271
ORF1ab/nsp31557A1557SGccTcc11D.20.000075
ORF1ab/nsp31557A1557SGccTcc11S.10.00495