CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = A1502V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31502A1502VA2320VnonsyngCtgTt406340620.9997547223-7225
ORF1ab/nsp31502A1502VA2320VnonsyngCTgTG406310.0002461247223-7225

Details of the mutation A1502V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31502A1502VgCtgTt40624063All0.000777
ORF1ab/nsp31502A1502VgCTgTG14063All0
ORF1ab/nsp31502A1502VgCtgTt19601960Q.40.891314
ORF1ab/nsp31502A1502VgCtgTt602602B.1.258.160.98527
ORF1ab/nsp31502A1502VgCtgTt409409B.1.1.70.000366
ORF1ab/nsp31502A1502VgCtgTt193193AY.40.0003
ORF1ab/nsp31502A1502VgCtgTt7878B.1.617.20.000294
ORF1ab/nsp31502A1502VgCtgTt7373B.1.110.30.052443
ORF1ab/nsp31502A1502VgCtgTt5152B.1.10.000925
ORF1ab/nsp31502A1502VgCTgTG152B.1.10.000018
ORF1ab/nsp31502A1502VgCtgTt4747AY.440.000286
ORF1ab/nsp31502A1502VgCtgTt4141AY.200.001593
ORF1ab/nsp31502A1502VgCtgTt3535AY.430.000155
ORF1ab/nsp31502A1502VgCtgTt3434B.1.20.000299
ORF1ab/nsp31502A1502VgCtgTt3333B.1.1600.001029
ORF1ab/nsp31502A1502VgCtgTt3333Q.80.005442
ORF1ab/nsp31502A1502VgCtgTt3131AY.1030.000192
ORF1ab/nsp31502A1502VgCtgTt2424AY.470.000747
ORF1ab/nsp31502A1502VgCtgTt2323B.10.000211
ORF1ab/nsp31502A1502VgCtgTt2020B.1.1770.000263
ORF1ab/nsp31502A1502VgCtgTt1919AY.1020.000504
ORF1ab/nsp31502A1502VgCtgTt1919AY.250.000114
ORF1ab/nsp31502A1502VgCtgTt1616AY.30.000159
ORF1ab/nsp31502A1502VgCtgTt1616B.1.2340.002111
ORF1ab/nsp31502A1502VgCtgTt1414AY.720.019048
ORF1ab/nsp31502A1502VgCtgTt1212P.1.70.003831
ORF1ab/nsp31502A1502VgCtgTt1111B.1.6370.000804
ORF1ab/nsp31502A1502VgCtgTt1010B.1.1.700.003411
ORF1ab/nsp31502A1502VgCtgTt99AY.1110.001648
ORF1ab/nsp31502A1502VgCtgTt99AY.9.20.000331
ORF1ab/nsp31502A1502VgCtgTt99B.1.2580.000599
ORF1ab/nsp31502A1502VgCtgTt99B.1.4820.75
ORF1ab/nsp31502A1502VgCtgTt88AY.420.000322
ORF1ab/nsp31502A1502VgCtgTt77AY.300.00277
ORF1ab/nsp31502A1502VgCtgTt77AY.810.013944
ORF1ab/nsp31502A1502VgCtgTt77B.1.1.3970.015766
ORF1ab/nsp31502A1502VgCtgTt77C.160.007423
ORF1ab/nsp31502A1502VgCtgTt66AY.1170.000507
ORF1ab/nsp31502A1502VgCtgTt66AY.290.000095
ORF1ab/nsp31502A1502VgCtgTt66AY.980.000474
ORF1ab/nsp31502A1502VgCtgTt66B.1.2360.01232
ORF1ab/nsp31502A1502VgCtgTt66P.10.000095
ORF1ab/nsp31502A1502VgCtgTt55AY.50.000103
ORF1ab/nsp31502A1502VgCtgTt55B.1.1.2840.000537
ORF1ab/nsp31502A1502VgCtgTt55B.1.2210.000355
ORF1ab/nsp31502A1502VgCtgTt55B.1.2430.000348
ORF1ab/nsp31502A1502VgCtgTt55B.1.3510.000149
ORF1ab/nsp31502A1502VgCtgTt55B.1.5260.000118
ORF1ab/nsp31502A1502VgCtgTt44AY.16.10.00188
ORF1ab/nsp31502A1502VgCtgTt44AY.46.60.000289
ORF1ab/nsp31502A1502VgCtgTt44AY.590.002119
ORF1ab/nsp31502A1502VgCtgTt44B.1.5250.000453
ORF1ab/nsp31502A1502VgCtgTt44B.1.6210.000354
ORF1ab/nsp31502A1502VgCtgTt33AY.1190.000106
ORF1ab/nsp31502A1502VgCtgTt33AY.120.10.000963
ORF1ab/nsp31502A1502VgCtgTt33AY.390.000074
ORF1ab/nsp31502A1502VgCtgTt33AY.4.20.000065
ORF1ab/nsp31502A1502VgCtgTt33AY.740.000347
ORF1ab/nsp31502A1502VgCtgTt33B.1.1.280.000934
ORF1ab/nsp31502A1502VgCtgTt33B.1.4290.000071
ORF1ab/nsp31502A1502VgCtgTt22AY.1000.000092
ORF1ab/nsp31502A1502VgCtgTt22AY.1050.001286
ORF1ab/nsp31502A1502VgCtgTt22AY.320.001065
ORF1ab/nsp31502A1502VgCtgTt22AY.450.000243
ORF1ab/nsp31502A1502VgCtgTt22AY.620.000871
ORF1ab/nsp31502A1502VgCtgTt22AY.7.10.000225
ORF1ab/nsp31502A1502VgCtgTt22AY.75.10.000361
ORF1ab/nsp31502A1502VgCtgTt22B.1.1.1740.006757
ORF1ab/nsp31502A1502VgCtgTt22B.1.1.510.003436
ORF1ab/nsp31502A1502VgCtgTt22B.1.428.30.025641
ORF1ab/nsp31502A1502VgCtgTt22B.1.4710.005464
ORF1ab/nsp31502A1502VgCtgTt22P.70.008734
ORF1ab/nsp31502A1502VgCtgTt11A.2.5.10.004808
ORF1ab/nsp31502A1502VgCtgTt11A.280.002646
ORF1ab/nsp31502A1502VgCtgTt11A.300.142857
ORF1ab/nsp31502A1502VgCtgTt11AY.1060.000335
ORF1ab/nsp31502A1502VgCtgTt11AY.120.000316
ORF1ab/nsp31502A1502VgCtgTt11AY.1200.000037
ORF1ab/nsp31502A1502VgCtgTt11AY.1210.000135
ORF1ab/nsp31502A1502VgCtgTt11AY.140.000088
ORF1ab/nsp31502A1502VgCtgTt11AY.230.00007
ORF1ab/nsp31502A1502VgCtgTt11AY.260.000028
ORF1ab/nsp31502A1502VgCtgTt11AY.270.000065
ORF1ab/nsp31502A1502VgCtgTt11AY.340.000097
ORF1ab/nsp31502A1502VgCtgTt11AY.360.000148
ORF1ab/nsp31502A1502VgCtgTt11AY.39.10.00004
ORF1ab/nsp31502A1502VgCtgTt11AY.4.2.10.000149
ORF1ab/nsp31502A1502VgCtgTt11AY.4.40.000409
ORF1ab/nsp31502A1502VgCtgTt11AY.4.50.000107
ORF1ab/nsp31502A1502VgCtgTt11AY.60.000041
ORF1ab/nsp31502A1502VgCtgTt11AY.610.000105
ORF1ab/nsp31502A1502VgCtgTt11AY.70.000196
ORF1ab/nsp31502A1502VgCtgTt11AY.770.001127
ORF1ab/nsp31502A1502VgCtgTt11AY.9.10.000084
ORF1ab/nsp31502A1502VgCtgTt11AY.940.000443
ORF1ab/nsp31502A1502VgCtgTt11B0.000128
ORF1ab/nsp31502A1502VgCtgTt11B.1.1.1410.002012
ORF1ab/nsp31502A1502VgCtgTt11B.1.1.2140.000055
ORF1ab/nsp31502A1502VgCtgTt11B.1.1.2660.012195
ORF1ab/nsp31502A1502VgCtgTt11B.1.1.2890.002083
ORF1ab/nsp31502A1502VgCtgTt11B.1.1.3060.000438
ORF1ab/nsp31502A1502VgCtgTt11B.1.1.3120.001912
ORF1ab/nsp31502A1502VgCtgTt11B.1.1.3690.000446
ORF1ab/nsp31502A1502VgCtgTt11B.1.1.370.000193
ORF1ab/nsp31502A1502VgCtgTt11B.1.1.4320.001266
ORF1ab/nsp31502A1502VgCtgTt11B.1.1.4340.000349
ORF1ab/nsp31502A1502VgCtgTt11B.1.1.4860.001577
ORF1ab/nsp31502A1502VgCtgTt11B.1.1.5190.00004
ORF1ab/nsp31502A1502VgCtgTt11B.1.160.160.000929
ORF1ab/nsp31502A1502VgCtgTt11B.1.177.430.001477
ORF1ab/nsp31502A1502VgCtgTt11B.1.177.450.000381
ORF1ab/nsp31502A1502VgCtgTt11B.1.177.70.000165
ORF1ab/nsp31502A1502VgCtgTt11B.1.177.730.000566
ORF1ab/nsp31502A1502VgCtgTt11B.1.177.770.000726
ORF1ab/nsp31502A1502VgCtgTt11B.1.177.80.000752
ORF1ab/nsp31502A1502VgCtgTt11B.1.177.810.000189
ORF1ab/nsp31502A1502VgCtgTt11B.1.2320.000537
ORF1ab/nsp31502A1502VgCtgTt11B.1.2400.000216
ORF1ab/nsp31502A1502VgCtgTt11B.1.258.110.000396
ORF1ab/nsp31502A1502VgCtgTt11B.1.351.20.000303
ORF1ab/nsp31502A1502VgCtgTt11B.1.360.000146
ORF1ab/nsp31502A1502VgCtgTt11B.1.36.180.00042
ORF1ab/nsp31502A1502VgCtgTt11B.1.4560.003268
ORF1ab/nsp31502A1502VgCtgTt11B.1.4990.00105
ORF1ab/nsp31502A1502VgCtgTt11B.1.564.10.001577
ORF1ab/nsp31502A1502VgCtgTt11B.1.5960.000087
ORF1ab/nsp31502A1502VgCtgTt11B.1.617.10.000129
ORF1ab/nsp31502A1502VgCtgTt11B.1.6280.000352
ORF1ab/nsp31502A1502VgCtgTt11C.350.000774
ORF1ab/nsp31502A1502VgCtgTt11N.100.029412
ORF1ab/nsp31502A1502VgCtgTt11P.1.150.000232
ORF1ab/nsp31502A1502VgCtgTt11Q.10.000126
ORF1ab/nsp31502A1502VgCtgTt11Q.70.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.