CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = A1502A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31502A1502AA2320AsyngcTgcC2351810.7702137223-7225
ORF1ab/nsp31502A1502AA2320AsyngcTgcG235400.1702137223-7225
ORF1ab/nsp31502A1502AA2320AsyngcTgcA235140.05957457223-7225

Details of the mutation A1502A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31502A1502AgcTgcC181235All0.000035
ORF1ab/nsp31502A1502AgcTgcG40235All0.000008
ORF1ab/nsp31502A1502AgcTgcA14235All0.000003
ORF1ab/nsp31502A1502AgcTgcC4747B.4.40.886792
ORF1ab/nsp31502A1502AgcTgcC1525B.1.1.70.000013
ORF1ab/nsp31502A1502AgcTgcA825B.1.1.70.000007
ORF1ab/nsp31502A1502AgcTgcG225B.1.1.70.000002
ORF1ab/nsp31502A1502AgcTgcC1019AY.40.000016
ORF1ab/nsp31502A1502AgcTgcG719AY.40.000011
ORF1ab/nsp31502A1502AgcTgcA219AY.40.000003
ORF1ab/nsp31502A1502AgcTgcC1212AY.440.000073
ORF1ab/nsp31502A1502AgcTgcC1112B.1.617.20.000041
ORF1ab/nsp31502A1502AgcTgcG112B.1.617.20.000004
ORF1ab/nsp31502A1502AgcTgcC910B.10.000082
ORF1ab/nsp31502A1502AgcTgcG110B.10.000009
ORF1ab/nsp31502A1502AgcTgcG88B.1.1600.00025
ORF1ab/nsp31502A1502AgcTgcC78B.1.20.000062
ORF1ab/nsp31502A1502AgcTgcG18B.1.20.000009
ORF1ab/nsp31502A1502AgcTgcG77AY.260.000198
ORF1ab/nsp31502A1502AgcTgcC66AY.750.000336
ORF1ab/nsp31502A1502AgcTgcC66B.1.360.000875
ORF1ab/nsp31502A1502AgcTgcC55B.40.011038
ORF1ab/nsp31502A1502AgcTgcG44AY.30.00004
ORF1ab/nsp31502A1502AgcTgcC44AY.430.000018
ORF1ab/nsp31502A1502AgcTgcC44B.1.10.000073
ORF1ab/nsp31502A1502AgcTgcC44B.1.6210.000354
ORF1ab/nsp31502A1502AgcTgcC13AY.4.20.000022
ORF1ab/nsp31502A1502AgcTgcG13AY.4.20.000022
ORF1ab/nsp31502A1502AgcTgcA13AY.4.20.000022
ORF1ab/nsp31502A1502AgcTgcG33AY.520.002443
ORF1ab/nsp31502A1502AgcTgcG12AY.1030.000006
ORF1ab/nsp31502A1502AgcTgcC12AY.1030.000006
ORF1ab/nsp31502A1502AgcTgcC22AY.270.000129
ORF1ab/nsp31502A1502AgcTgcC12AY.50.000021
ORF1ab/nsp31502A1502AgcTgcG12AY.50.000021
ORF1ab/nsp31502A1502AgcTgcC22B.1.177.530.004785
ORF1ab/nsp31502A1502AgcTgcC22B.1.4290.000047
ORF1ab/nsp31502A1502AgcTgcA110.055556
ORF1ab/nsp31502A1502AgcTgcC11A0.000387
ORF1ab/nsp31502A1502AgcTgcC11A.2.50.000499
ORF1ab/nsp31502A1502AgcTgcC11AY.1080.001103
ORF1ab/nsp31502A1502AgcTgcC11AY.1140.000231
ORF1ab/nsp31502A1502AgcTgcC11AY.1180.000063
ORF1ab/nsp31502A1502AgcTgcG11AY.1190.000035
ORF1ab/nsp31502A1502AgcTgcC11AY.1210.000135
ORF1ab/nsp31502A1502AgcTgcG11AY.250.000006
ORF1ab/nsp31502A1502AgcTgcC11AY.330.000067
ORF1ab/nsp31502A1502AgcTgcC11AY.360.000148
ORF1ab/nsp31502A1502AgcTgcC11AY.380.000499
ORF1ab/nsp31502A1502AgcTgcC11AY.420.00004
ORF1ab/nsp31502A1502AgcTgcC11AY.550.000917
ORF1ab/nsp31502A1502AgcTgcA11AY.650.000533
ORF1ab/nsp31502A1502AgcTgcC11AY.70.000196
ORF1ab/nsp31502A1502AgcTgcC11AY.9.20.000037
ORF1ab/nsp31502A1502AgcTgcC11B.1.1.1770.019231
ORF1ab/nsp31502A1502AgcTgcC11B.1.1.5190.00004
ORF1ab/nsp31502A1502AgcTgcC11B.1.1.700.000341
ORF1ab/nsp31502A1502AgcTgcC11B.1.160.150.00495
ORF1ab/nsp31502A1502AgcTgcC11B.1.1770.000013
ORF1ab/nsp31502A1502AgcTgcC11B.1.177.600.000218
ORF1ab/nsp31502A1502AgcTgcC11B.1.177.90.001332
ORF1ab/nsp31502A1502AgcTgcC11B.1.2320.000537
ORF1ab/nsp31502A1502AgcTgcC11B.1.2340.000132
ORF1ab/nsp31502A1502AgcTgcC11B.1.2580.000067
ORF1ab/nsp31502A1502AgcTgcC11B.1.3490.000715
ORF1ab/nsp31502A1502AgcTgcC11B.1.36.80.001
ORF1ab/nsp31502A1502AgcTgcA11B.1.3670.000792
ORF1ab/nsp31502A1502AgcTgcC11B.1.4970.000315
ORF1ab/nsp31502A1502AgcTgcC11B.1.5510.00129
ORF1ab/nsp31502A1502AgcTgcC11D.20.000075
ORF1ab/nsp31502A1502AgcTgcC11N.10.016949
ORF1ab/nsp31502A1502AgcTgcC11P.10.000016
ORF1ab/nsp31502A1502AgcTgcC11Q.30.000145
ORF1ab/nsp31502A1502AgcTgcG11Q.80.000165
ORF1ab/nsp31502A1502AgcTgcC11R.10.00009