CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 149 | A149V | A967V | nonsyn | gCt | gTt | 3395 | 3394 | 0.999705 | 3164-3166 |
ORF1ab/nsp3 | 149 | A149V | A967V | nonsyn | gCT | gTA | 3395 | 1 | 0.000294551 | 3164-3166 |
Details of the mutation A149V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 3394 | 3395 | All | 0.000649 |
ORF1ab/nsp3 | 149 | A149V | gCT | gTA | 1 | 3395 | All | 0 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1197 | 1197 | A.2.5 | 0.597305 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 479 | 479 | B.1.497 | 0.150771 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 289 | 289 | B.1.1.7 | 0.000259 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 161 | 161 | AY.43 | 0.000713 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 103 | 103 | B.1.2 | 0.000907 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 99 | 99 | AY.4 | 0.000154 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 77 | 77 | AY.46.6 | 0.00556 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 72 | 72 | AY.3 | 0.000716 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 72 | 72 | AY.5 | 0.001487 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 57 | 57 | B.1.617.2 | 0.000215 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 45 | 45 | AY.103 | 0.000279 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 43 | 43 | AY.25 | 0.000259 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 35 | 35 | B.1.582 | 0.017174 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 34 | 34 | AY.44 | 0.000207 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 32 | 32 | B.1.526 | 0.000752 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 25 | 25 | B.1 | 0.000229 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 24 | 24 | AY.4.2 | 0.000521 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 23 | 23 | AY.113 | 0.003275 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 23 | 23 | AY.26 | 0.000651 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 19 | 19 | B.1.429 | 0.000447 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 19 | 19 | L.2 | 0.215909 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 17 | 17 | B.1.177 | 0.000224 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 16 | 16 | AY.99.2 | 0.001475 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 16 | 16 | B.1.177.77 | 0.011619 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 14 | 14 | B.1.1.70 | 0.004775 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 14 | 14 | P.1 | 0.000221 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 13 | 13 | B.1.1 | 0.000236 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 11 | 11 | B.1.36.29 | 0.005691 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 11 | 11 | Q.1 | 0.00139 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 10 | 10 | AY.102 | 0.000265 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 10 | 10 | B.1.459 | 0.040816 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 10 | 10 | C.37 | 0.001161 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 9 | 9 | AY.13 | 0.001449 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 9 | 9 | AY.98.1 | 0.000436 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 9 | 9 | B.1.236 | 0.01848 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 9 | 9 | B.1.621 | 0.000797 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 8 | 8 | AY.100 | 0.000368 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 8 | 8 | AY.47 | 0.000249 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 8 | 8 | B.1.221 | 0.000568 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 8 | 8 | B.1.378 | 0.054795 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 7 | 7 | AY.20 | 0.000272 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 7 | 7 | B.1.471 | 0.019126 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 6 | 6 | AY.29 | 0.000095 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 6 | 6 | B.1.1.318 | 0.001811 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 5 | 5 | AD.2 | 0.001095 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 5 | 5 | AY.45 | 0.000608 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 5 | 5 | AY.61 | 0.000524 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 5 | 5 | B.1.361 | 0.006443 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 5 | 5 | B.1.617.1 | 0.000645 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 4 | 4 | A.21 | 0.01108 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 4 | 4 | AY.111 | 0.000733 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 4 | 4 | AY.39.1 | 0.000158 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 4 | 4 | AY.74 | 0.000463 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 4 | 4 | AZ.2 | 0.003284 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 4 | 4 | B.1.351 | 0.000119 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 3 | 3 | AU.2 | 0.007264 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 3 | 3 | AY.71 | 0.001425 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 3 | 3 | AY.91 | 0.002191 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 3 | 3 | B.1.1.63 | 0.001157 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 3 | 3 | B.1.126 | 0.003827 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 3 | 3 | B.1.177.4 | 0.000633 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 3 | 3 | B.1.177.57 | 0.000843 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 3 | 3 | B.1.369 | 0.000856 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 3 | 3 | B.1.439 | 0.017751 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 3 | 3 | B.1.575 | 0.00091 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 3 | 3 | P.1.10.2 | 0.125 |
ORF1ab/nsp3 | 149 | A149V | gCT | gTA | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 2 | 2 | AE.3 | 0.064516 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 2 | 2 | AY.19 | 0.002281 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 2 | 2 | AY.90 | 0.001369 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 2 | 2 | B.1.1.523 | 0.003125 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 2 | 2 | B.1.158 | 0.047619 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 2 | 2 | B.1.177.54 | 0.001213 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 2 | 2 | B.1.221.3 | 0.001667 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 2 | 2 | B.1.565 | 0.001621 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 2 | 2 | N.5 | 0.003534 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | AZ.5 | 0.003509 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.1.200 | 0.007463 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.1.349 | 0.010309 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.1.429 | 0.004608 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.1.440 | 0.011765 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.13 | 0.002375 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.143 | 0.021277 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.229 | 0.009709 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.264 | 0.012346 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.306 | 0.005714 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.36.23 | 0.016393 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.433 | 0.003195 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.544 | 0.006024 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.1.9.4 | 0.006135 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | B.4.1 | 0.018868 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | C.1.2 | 0.004255 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | C.26 | 0.007353 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp3 | 149 | A149V | gCt | gTt | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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