CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1431 | A1431V | A2249V | nonsyn | gCt | gTt | 5211 | 5211 | 1 | 7010-7012 |
Details of the mutation A1431V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 5211 | 5211 | All | 0.000997 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 858 | 858 | B.1.1.7 | 0.000768 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 803 | 803 | B.1.2 | 0.007071 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 363 | 363 | AY.4 | 0.000565 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 301 | 301 | AY.116 | 0.086321 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 222 | 222 | B.1.526 | 0.005218 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 176 | 176 | AY.103 | 0.001093 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 175 | 175 | B.1.617.2 | 0.000659 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 175 | 175 | B.3 | 0.145349 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 127 | 127 | AY.44 | 0.000773 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 123 | 123 | AY.43 | 0.000545 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 97 | 97 | B.1.1.284 | 0.010418 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 85 | 85 | AY.5 | 0.001755 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 82 | 82 | AY.4.2 | 0.001778 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 70 | 70 | B.1.1.519 | 0.00278 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 65 | 65 | B.1.1.70 | 0.022169 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 61 | 61 | B.60 | 0.968254 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 58 | 58 | AY.47 | 0.001804 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 56 | 56 | B.1 | 0.000513 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 49 | 49 | B.1.160.18 | 0.357664 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 46 | 46 | P.1 | 0.000725 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 41 | 41 | B.1.596 | 0.003573 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 40 | 40 | B.1.1.14 | 0.689655 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 37 | 37 | AY.25 | 0.000223 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 35 | 35 | AY.3 | 0.000348 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 35 | 35 | B.1.177 | 0.000461 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 32 | 32 | B.1.1 | 0.000581 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 31 | 31 | AY.61 | 0.003248 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 27 | 27 | AY.117 | 0.002282 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 26 | 26 | B.1.619 | 0.022648 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 23 | 23 | AY.39.1 | 0.000911 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 22 | 22 | B.1.429 | 0.000518 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 21 | 21 | AY.29 | 0.000331 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 21 | 21 | B.1.177.88 | 0.259259 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 19 | 19 | B.1.1.214 | 0.001054 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 19 | 19 | B.1.177.60 | 0.00415 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 18 | 18 | B.1.160 | 0.000561 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 16 | 16 | B.1.221 | 0.001137 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 15 | 15 | AY.39 | 0.000371 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 15 | 15 | B.1.351 | 0.000446 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 15 | 15 | B.1.36.29 | 0.00776 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 14 | 14 | A | 0.005418 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 14 | 14 | AY.102 | 0.000371 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 14 | 14 | AY.24 | 0.006034 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 14 | 14 | B | 0.001789 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 14 | 14 | B.1.243 | 0.000974 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 14 | 14 | Q.1 | 0.001769 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 13 | 13 | AY.26 | 0.000368 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 13 | 13 | AY.46.6 | 0.000939 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 13 | 13 | B.1.36 | 0.001897 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 12 | 12 | AY.23 | 0.000837 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 12 | 12 | B.1.177.81 | 0.002272 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 12 | 12 | B.1.36.31 | 0.021016 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 12 | 12 | B.1.617.1 | 0.001548 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 11 | 11 | AY.100 | 0.000506 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 11 | 11 | B.1.1.33 | 0.00463 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 11 | 11 | B.1.336 | 0.026829 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 11 | 11 | B.1.561 | 0.004367 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 10 | 10 | AY.113 | 0.001424 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 10 | 10 | AY.60 | 0.009381 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 10 | 10 | B.1.1.157 | 0.009132 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 10 | 10 | B.1.177.2 | 0.045455 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 10 | 10 | B.1.258.17 | 0.00104 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 9 | 9 | AY.45 | 0.001095 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 9 | 9 | B.1.523 | 0.022059 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 9 | 9 | B.1.621 | 0.000797 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 8 | 8 | AY.19 | 0.009122 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 8 | 8 | AY.4.5 | 0.00086 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 8 | 8 | B.1.1.359 | 0.222222 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 8 | 8 | B.1.427 | 0.000404 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 7 | 7 | AY.20 | 0.000272 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 7 | 7 | AY.85 | 0.00299 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 7 | 7 | B.1.177.21 | 0.000535 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 7 | 7 | B.1.232 | 0.003761 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 7 | 7 | B.1.628 | 0.002467 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 7 | 7 | P.1.14 | 0.000335 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 6 | 6 | AY.119 | 0.000212 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 6 | 6 | AY.12 | 0.001896 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 6 | 6 | AY.120 | 0.000223 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 6 | 6 | AY.57 | 0.003937 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 6 | 6 | B.1.177.74 | 0.090909 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 5 | 5 | AY.6 | 0.000206 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 5 | 5 | AY.68 | 0.001369 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 5 | 5 | B.1.1.216 | 0.004452 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 5 | 5 | B.1.1.306 | 0.002192 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 5 | 5 | B.1.324 | 0.008026 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 5 | 5 | D.2 | 0.000375 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 4 | 4 | AY.1 | 0.001583 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 4 | 4 | AY.14 | 0.000352 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 4 | 4 | AY.36 | 0.000593 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 4 | 4 | AY.46 | 0.000416 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 4 | 4 | AY.71 | 0.0019 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 4 | 4 | B.1.1.1 | 0.001307 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 4 | 4 | B.1.1.170 | 0.004988 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 4 | 4 | B.1.1.189 | 0.006051 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 4 | 4 | B.1.1.311 | 0.001433 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 4 | 4 | B.1.1.375 | 0.047619 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 4 | 4 | B.1.160.26 | 0.009685 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 4 | 4 | B.1.177.86 | 0.000734 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 4 | 4 | B.1.234 | 0.000528 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 4 | 4 | C.37 | 0.000464 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 4 | 4 | P.2 | 0.000747 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 4 | 4 | R.1 | 0.00036 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 3 | 3 | AY.39.2 | 0.004622 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 3 | 3 | AY.5.3 | 0.001012 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 3 | 3 | AY.55 | 0.002752 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 3 | 3 | AY.84 | 0.001312 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 3 | 3 | B.1.177.4 | 0.000633 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 3 | 3 | B.1.240 | 0.000647 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 3 | 3 | B.1.258.14 | 0.002941 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 3 | 3 | B.1.404 | 0.003906 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 3 | 3 | B.1.466.2 | 0.001174 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 3 | 3 | B.1.564.1 | 0.004732 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 3 | 3 | B.40 | 0.001093 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 2 | 2 | AY.95 | 0.001522 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 2 | 2 | B.1.1.159 | 0.009346 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 2 | 2 | B.1.1.186 | 0.006873 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 2 | 2 | B.1.1.192 | 0.004619 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 2 | 2 | B.1.1.291 | 0.001485 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 2 | 2 | B.1.1.298 | 0.001724 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 2 | 2 | B.1.1.302 | 0.004149 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 2 | 2 | B.1.1.416 | 0.00181 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 2 | 2 | B.1.177.75 | 0.002081 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 2 | 2 | B.1.239 | 0.002442 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 2 | 2 | B.1.241 | 0.001623 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 2 | 2 | B.1.279 | 0.001027 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 2 | 2 | B.1.36.7 | 0.008 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 2 | 2 | B.1.403 | 0.006536 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 2 | 2 | B.1.575.1 | 0.004878 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 2 | 2 | B.1.94 | 0.054054 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 2 | 2 | B.28 | 0.006557 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 2 | 2 | P.6 | 0.006289 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 2 | 2 | W.4 | 0.002703 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.1.286 | 0.002899 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.1.297 | 0.002237 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.1.333 | 0.001076 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.1.362 | 0.005618 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.1.404 | 0.015873 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.1.442 | 0.018519 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.1.517 | 0.006803 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.225 | 0.015385 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.248 | 0.029412 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.35 | 0.008475 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.474 | 0.001901 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.556 | 0.007519 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.39 | 0.002331 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | B.61 | 0.005747 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | C.2 | 0.016129 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | D.5 | 0.004975 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | L.3 | 0.003546 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1431 | A1431V | gCt | gTt | 1 | 1 | P.5 | 0.013699 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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