CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = A1431S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31431A1431SA2249SnonsynGctTct1151130.9826097010-7012
ORF1ab/nsp31431A1431SA2249SnonsynGcTTcA11520.01739137010-7012

Details of the mutation A1431S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31431A1431SGctTct113115All0.000022
ORF1ab/nsp31431A1431SGcTTcA2115All0
ORF1ab/nsp31431A1431SGctTct3939AY.9.20.001432
ORF1ab/nsp31431A1431SGctTct1112B.1.1.70.00001
ORF1ab/nsp31431A1431SGcTTcA112B.1.1.70.000001
ORF1ab/nsp31431A1431SGctTct1010B.1.617.20.000038
ORF1ab/nsp31431A1431SGctTct77AY.40.000011
ORF1ab/nsp31431A1431SGctTct55D.20.000375
ORF1ab/nsp31431A1431SGctTct33AY.250.000018
ORF1ab/nsp31431A1431SGctTct33AY.430.000013
ORF1ab/nsp31431A1431SGctTct33B.1.10.000054
ORF1ab/nsp31431A1431SGcTTcA120.055556
ORF1ab/nsp31431A1431SGctTct120.055556
ORF1ab/nsp31431A1431SGctTct22AY.290.000032
ORF1ab/nsp31431A1431SGctTct22AY.440.000012
ORF1ab/nsp31431A1431SGctTct22AY.460.000208
ORF1ab/nsp31431A1431SGctTct22AY.75.10.000361
ORF1ab/nsp31431A1431SGctTct22B.1.1.5190.000079
ORF1ab/nsp31431A1431SGctTct22B.1.4290.000047
ORF1ab/nsp31431A1431SGctTct22C.20.032258
ORF1ab/nsp31431A1431SGctTct11A.20.000662
ORF1ab/nsp31431A1431SGctTct11AY.1050.000643
ORF1ab/nsp31431A1431SGctTct11AY.200.000039
ORF1ab/nsp31431A1431SGctTct11AY.240.000431
ORF1ab/nsp31431A1431SGctTct11AY.4.20.000022
ORF1ab/nsp31431A1431SGctTct11AY.50.000021
ORF1ab/nsp31431A1431SGctTct11AY.590.00053
ORF1ab/nsp31431A1431SGctTct11B.10.000009
ORF1ab/nsp31431A1431SGctTct11B.1.1.2310.003096
ORF1ab/nsp31431A1431SGctTct11B.1.1770.000013
ORF1ab/nsp31431A1431SGctTct11B.1.177.60.000977
ORF1ab/nsp31431A1431SGctTct11B.1.2210.000071
ORF1ab/nsp31431A1431SGctTct11B.1.230.006061
ORF1ab/nsp31431A1431SGctTct11B.1.2730.012987
ORF1ab/nsp31431A1431SGctTct11B.1.3510.00003
ORF1ab/nsp31431A1431SGctTct11B.1.5210.004975
ORF1ab/nsp31431A1431SGctTct11P.20.000187