CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = A1381V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31381A1381VA2199VnonsyngCagTa8498400.9893996860-6862
ORF1ab/nsp31381A1381VA2199VnonsyngCAgTT84980.009422856860-6862
ORF1ab/nsp31381A1381VA2199VnonsyngCAgTG84910.001177866860-6862

Details of the mutation A1381V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31381A1381VgCagTa840849All0.000161
ORF1ab/nsp31381A1381VgCAgTT8849All0.000002
ORF1ab/nsp31381A1381VgCAgTG1849All0
ORF1ab/nsp31381A1381VgCagTa146153B.1.1.70.000131
ORF1ab/nsp31381A1381VgCAgTT7153B.1.1.70.000006
ORF1ab/nsp31381A1381VgCagTa8080AY.420.003218
ORF1ab/nsp31381A1381VgCagTa7373B.1.1.3290.280769
ORF1ab/nsp31381A1381VgCagTa6868B.1.1.100.075808
ORF1ab/nsp31381A1381VgCagTa6767AY.30.000666
ORF1ab/nsp31381A1381VgCagTa3131AY.40.000048
ORF1ab/nsp31381A1381VgCagTa2929B.1.177.600.006335
ORF1ab/nsp31381A1381VgCagTa2323AY.440.00014
ORF1ab/nsp31381A1381VgCagTa2222AY.1110.004029
ORF1ab/nsp31381A1381VgCagTa1919AY.1030.000118
ORF1ab/nsp31381A1381VgCagTa1818L.40.9
ORF1ab/nsp31381A1381VgCagTa1717AY.250.000102
ORF1ab/nsp31381A1381VgCagTa1616P.10.000252
ORF1ab/nsp31381A1381VgCagTa1515B.10.000137
ORF1ab/nsp31381A1381VgCagTa1515B.1.617.20.000056
ORF1ab/nsp31381A1381VgCagTa1414AY.430.000062
ORF1ab/nsp31381A1381VgCagTa1414B.1.20.000123
ORF1ab/nsp31381A1381VgCagTa1414B.1.2430.000974
ORF1ab/nsp31381A1381VgCagTa1213B.1.10.000218
ORF1ab/nsp31381A1381VgCAgTT113B.1.10.000018
ORF1ab/nsp31381A1381VgCagTa1010AY.200.000389
ORF1ab/nsp31381A1381VgCagTa99P.1.150.002091
ORF1ab/nsp31381A1381VgCagTa88AY.850.003417
ORF1ab/nsp31381A1381VgCagTa88AY.99.20.000737
ORF1ab/nsp31381A1381VgCagTa77B.1.970.179487
ORF1ab/nsp31381A1381VgCagTa55AY.9.20.000184
ORF1ab/nsp31381A1381VgCagTa55B.1.1.5190.000199
ORF1ab/nsp31381A1381VgCagTa55B.1.5260.000118
ORF1ab/nsp31381A1381VgCagTa44AY.1020.000106
ORF1ab/nsp31381A1381VgCagTa44AY.1170.000338
ORF1ab/nsp31381A1381VgCagTa44B.1.1.10.001307
ORF1ab/nsp31381A1381VgCagTa44B.1.1.4320.005063
ORF1ab/nsp31381A1381VgCagTa44B.1.5250.000453
ORF1ab/nsp31381A1381VgCagTa33B.1.2210.000213
ORF1ab/nsp31381A1381VgCagTa33C.370.000348
ORF1ab/nsp31381A1381VgCagTa33D.20.000225
ORF1ab/nsp31381A1381VgCagTa220.111111
ORF1ab/nsp31381A1381VgCagTa22AY.1000.000092
ORF1ab/nsp31381A1381VgCagTa22AY.1180.000125
ORF1ab/nsp31381A1381VgCagTa22AY.1190.000071
ORF1ab/nsp31381A1381VgCagTa22AY.1200.000074
ORF1ab/nsp31381A1381VgCagTa22AY.190.002281
ORF1ab/nsp31381A1381VgCagTa22AY.270.000129
ORF1ab/nsp31381A1381VgCagTa22AY.390.000049
ORF1ab/nsp31381A1381VgCagTa22B.1.1.2140.000111
ORF1ab/nsp31381A1381VgCagTa22B.1.2410.001623
ORF1ab/nsp31381A1381VgCagTa22B.1.2580.000133
ORF1ab/nsp31381A1381VgCagTa22B.1.258.170.000208
ORF1ab/nsp31381A1381VgCagTa22B.1.5960.000174
ORF1ab/nsp31381A1381VgCagTa11A0.000387
ORF1ab/nsp31381A1381VgCagTa11AD.20.000219
ORF1ab/nsp31381A1381VgCagTa11AY.1070.000466
ORF1ab/nsp31381A1381VgCagTa11AY.1090.00074
ORF1ab/nsp31381A1381VgCagTa11AY.230.00007
ORF1ab/nsp31381A1381VgCagTa11AY.290.000016
ORF1ab/nsp31381A1381VgCagTa11AY.320.000532
ORF1ab/nsp31381A1381VgCagTa11AY.340.000097
ORF1ab/nsp31381A1381VgCagTa11AY.4.20.000022
ORF1ab/nsp31381A1381VgCagTa11AY.470.000031
ORF1ab/nsp31381A1381VgCagTa11AY.480.000465
ORF1ab/nsp31381A1381VgCagTa11AY.50.000021
ORF1ab/nsp31381A1381VgCagTa11AY.740.000116
ORF1ab/nsp31381A1381VgCagTa11AY.790.001211
ORF1ab/nsp31381A1381VgCagTa11AY.840.000437
ORF1ab/nsp31381A1381VgCagTa11AY.90.000068
ORF1ab/nsp31381A1381VgCagTa11B.1.1.280.000311
ORF1ab/nsp31381A1381VgCagTa11B.1.1.2940.001266
ORF1ab/nsp31381A1381VgCagTa11B.1.1.3810.04
ORF1ab/nsp31381A1381VgCagTa11B.1.1.390.00051
ORF1ab/nsp31381A1381VgCagTa11B.1.2350.002519
ORF1ab/nsp31381A1381VgCagTa11B.1.3490.000715
ORF1ab/nsp31381A1381VgCagTa11B.1.3510.00003
ORF1ab/nsp31381A1381VgCagTa11B.1.3960.000706
ORF1ab/nsp31381A1381VgCagTa11B.1.4270.00005
ORF1ab/nsp31381A1381VgCagTa11B.1.4290.000024
ORF1ab/nsp31381A1381VgCagTa11B.1.466.20.000391
ORF1ab/nsp31381A1381VgCagTa11B.1.4690.00361
ORF1ab/nsp31381A1381VgCagTa11B.1.5880.00091
ORF1ab/nsp31381A1381VgCagTa11B.1.6120.002653
ORF1ab/nsp31381A1381VgCAgTG11B.1.617.10.000129
ORF1ab/nsp31381A1381VgCagTa11B.1.621.10.000506
ORF1ab/nsp31381A1381VgCagTa11C.360.000911
ORF1ab/nsp31381A1381VgCagTa11P.1.130.000898
ORF1ab/nsp31381A1381VgCagTa11Q.10.000126
ORF1ab/nsp31381A1381VgCagTa11Q.80.000165