CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = A1311V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31311A1311VA2129VnonsyngCtgTt334033390.9997016650-6652
ORF1ab/nsp31311A1311VA2129VnonsyngCTgTC334010.0002994016650-6652

Details of the mutation A1311V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31311A1311VgCtgTt33393340All0.000639
ORF1ab/nsp31311A1311VgCTgTC13340All0
ORF1ab/nsp31311A1311VgCtgTt839839B.1.1.70.000751
ORF1ab/nsp31311A1311VgCtgTt259259AY.1030.001608
ORF1ab/nsp31311A1311VgCtgTt243243AY.40.000378
ORF1ab/nsp31311A1311VgCtgTt105105B.1.3380.905172
ORF1ab/nsp31311A1311VgCtgTt101101B.1.617.20.00038
ORF1ab/nsp31311A1311VgCtgTt8585AY.430.000377
ORF1ab/nsp31311A1311VgCtgTt8181AY.50.001673
ORF1ab/nsp31311A1311VgCtgTt7575AY.250.000451
ORF1ab/nsp31311A1311VgCtgTt7272B.1.20.000634
ORF1ab/nsp31311A1311VgCtgTt7171B.1.2400.015305
ORF1ab/nsp31311A1311VgCtgTt6868AY.330.004541
ORF1ab/nsp31311A1311VgCtgTt6464AY.440.00039
ORF1ab/nsp31311A1311VgCtgTt6161AH.30.231939
ORF1ab/nsp31311A1311VgCtgTt6060B.10.00055
ORF1ab/nsp31311A1311VgCtgTt5858B.1.6370.004238
ORF1ab/nsp31311A1311VgCtgTt5656AY.60.002303
ORF1ab/nsp31311A1311VgCtgTt5353B.1.1770.000698
ORF1ab/nsp31311A1311VgCtgTt4949B.1.10.000889
ORF1ab/nsp31311A1311VgCtgTt4747AY.120.10.015088
ORF1ab/nsp31311A1311VgCtgTt4141B.1.1.3180.012372
ORF1ab/nsp31311A1311VgCtgTt3838B.1.1.5240.791667
ORF1ab/nsp31311A1311VgCtgTt3333AY.30.000328
ORF1ab/nsp31311A1311VgCtgTt3131P.10.000488
ORF1ab/nsp31311A1311VgCtgTt3030AY.260.000849
ORF1ab/nsp31311A1311VgCtgTt2626AY.4.20.000564
ORF1ab/nsp31311A1311VgCtgTt2626B.1.2430.001809
ORF1ab/nsp31311A1311VgCtgTt2525AY.98.10.001211
ORF1ab/nsp31311A1311VgCtgTt2525B.1.5260.000588
ORF1ab/nsp31311A1311VgCtgTt2323AY.390.000568
ORF1ab/nsp31311A1311VgCtgTt2222AY.1170.001859
ORF1ab/nsp31311A1311VgCtgTt2121B.1.4290.000494
ORF1ab/nsp31311A1311VgCtgTt1919AY.290.0003
ORF1ab/nsp31311A1311VgCtgTt1919R.10.00171
ORF1ab/nsp31311A1311VgCtgTt1717AY.230.001186
ORF1ab/nsp31311A1311VgCtgTt1717B.1.1600.00053
ORF1ab/nsp31311A1311VgCtgTt1717B.1.2210.001208
ORF1ab/nsp31311A1311VgCtgTt1515AY.1190.00053
ORF1ab/nsp31311A1311VgCtgTt1212B.1.5960.001046
ORF1ab/nsp31311A1311VgCtgTt1111B.1.177.440.005708
ORF1ab/nsp31311A1311VgCtgTt1111B.1.2580.000732
ORF1ab/nsp31311A1311VgCtgTt1111B.1.5760.009973
ORF1ab/nsp31311A1311VgCtgTt1111P.1.140.000526
ORF1ab/nsp31311A1311VgCtgTt1111P.1.150.002556
ORF1ab/nsp31311A1311VgCtgTt1010AY.1180.000626
ORF1ab/nsp31311A1311VgCtgTt99B.1.1.1890.013616
ORF1ab/nsp31311A1311VgCtgTt88AY.1020.000212
ORF1ab/nsp31311A1311VgCtgTt88AY.39.10.000317
ORF1ab/nsp31311A1311VgCtgTt88B.1.1.5190.000318
ORF1ab/nsp31311A1311VgCtgTt88Q.80.001319
ORF1ab/nsp31311A1311VgCtgTt77AY.110.009371
ORF1ab/nsp31311A1311VgCtgTt66AY.1200.000223
ORF1ab/nsp31311A1311VgCtgTt66AY.4.50.000645
ORF1ab/nsp31311A1311VgCtgTt66AY.75.10.001082
ORF1ab/nsp31311A1311VgCtgTt66B.1.177.810.001136
ORF1ab/nsp31311A1311VgCtgTt66B.1.3510.000178
ORF1ab/nsp31311A1311VgCtgTt66B.1.360.000875
ORF1ab/nsp31311A1311VgCtgTt66B.1.4000.002574
ORF1ab/nsp31311A1311VgCtgTt66B.1.438.10.000644
ORF1ab/nsp31311A1311VgCtgTt55AY.450.000608
ORF1ab/nsp31311A1311VgCtgTt55AY.46.60.000361
ORF1ab/nsp31311A1311VgCtgTt55AY.7.20.002796
ORF1ab/nsp31311A1311VgCtgTt55B.1.1.3160.004625
ORF1ab/nsp31311A1311VgCtgTt55B.1.1.3170.002058
ORF1ab/nsp31311A1311VgCtgTt55B.1.4270.000252
ORF1ab/nsp31311A1311VgCtgTt55B.1.5270.018519
ORF1ab/nsp31311A1311VgCtgTt44AY.1000.000184
ORF1ab/nsp31311A1311VgCtgTt44AY.1010.001962
ORF1ab/nsp31311A1311VgCtgTt44AY.210.00759
ORF1ab/nsp31311A1311VgCtgTt44AY.420.000161
ORF1ab/nsp31311A1311VgCtgTt44AY.750.000224
ORF1ab/nsp31311A1311VgCtgTt44B0.000511
ORF1ab/nsp31311A1311VgCtgTt44B.1.1.2140.000222
ORF1ab/nsp31311A1311VgCtgTt44B.1.1.4860.006309
ORF1ab/nsp31311A1311VgCtgTt44B.1.2060.003263
ORF1ab/nsp31311A1311VgCtgTt44Q.30.00058
ORF1ab/nsp31311A1311VgCtgTt33A.50.005769
ORF1ab/nsp31311A1311VgCtgTt33AY.1130.000427
ORF1ab/nsp31311A1311VgCtgTt33AY.140.000264
ORF1ab/nsp31311A1311VgCtgTt33AY.3.10.000256
ORF1ab/nsp31311A1311VgCtgTt33AY.380.001498
ORF1ab/nsp31311A1311VgCtgTt33AY.470.000093
ORF1ab/nsp31311A1311VgCtgTt33AY.650.001599
ORF1ab/nsp31311A1311VgCtgTt33AY.9.10.000251
ORF1ab/nsp31311A1311VgCtgTt33AY.9.20.00011
ORF1ab/nsp31311A1311VgCtgTt33AY.920.000862
ORF1ab/nsp31311A1311VgCtgTt33B.1.1.2310.009288
ORF1ab/nsp31311A1311VgCtgTt33B.1.1.280.000934
ORF1ab/nsp31311A1311VgCtgTt33B.1.1.3060.001315
ORF1ab/nsp31311A1311VgCtgTt33B.1.2340.000396
ORF1ab/nsp31311A1311VgCtgTt33B.1.3610.003866
ORF1ab/nsp31311A1311VgCtgTt33B.1.4110.011111
ORF1ab/nsp31311A1311VgCtgTt33B.1.595.40.021898
ORF1ab/nsp31311A1311VgCtgTt33B.1.617.10.000387
ORF1ab/nsp31311A1311VgCtgTt33P.1.90.014423
ORF1ab/nsp31311A1311VgCTgTC120.055556
ORF1ab/nsp31311A1311VgCtgTt120.055556
ORF1ab/nsp31311A1311VgCtgTt22AY.10.000791
ORF1ab/nsp31311A1311VgCtgTt22AY.1100.000225
ORF1ab/nsp31311A1311VgCtgTt22AY.1110.000366
ORF1ab/nsp31311A1311VgCtgTt22AY.160.000759
ORF1ab/nsp31311A1311VgCtgTt22AY.200.000078
ORF1ab/nsp31311A1311VgCtgTt22AY.270.000129
ORF1ab/nsp31311A1311VgCtgTt22AY.300.000791
ORF1ab/nsp31311A1311VgCtgTt22AY.340.000194
ORF1ab/nsp31311A1311VgCtgTt22AY.360.000296
ORF1ab/nsp31311A1311VgCtgTt22AY.460.000208
ORF1ab/nsp31311A1311VgCtgTt22AY.46.40.000329
ORF1ab/nsp31311A1311VgCtgTt22AY.46.50.000397
ORF1ab/nsp31311A1311VgCtgTt22AY.610.00021
ORF1ab/nsp31311A1311VgCtgTt22AY.680.000547
ORF1ab/nsp31311A1311VgCtgTt22AY.740.000231
ORF1ab/nsp31311A1311VgCtgTt22AY.850.000854
ORF1ab/nsp31311A1311VgCtgTt22AY.880.001768
ORF1ab/nsp31311A1311VgCtgTt22B.1.1.2220.000408
ORF1ab/nsp31311A1311VgCtgTt22B.1.1.250.001137
ORF1ab/nsp31311A1311VgCtgTt22B.1.1.330.000842
ORF1ab/nsp31311A1311VgCtgTt22B.1.1.5280.009615
ORF1ab/nsp31311A1311VgCtgTt22B.1.177.150.001262
ORF1ab/nsp31311A1311VgCtgTt22B.1.177.710.020202
ORF1ab/nsp31311A1311VgCtgTt22B.1.177.750.002081
ORF1ab/nsp31311A1311VgCtgTt22B.1.2650.002541
ORF1ab/nsp31311A1311VgCtgTt22B.1.36.180.00084
ORF1ab/nsp31311A1311VgCtgTt22B.1.3670.001585
ORF1ab/nsp31311A1311VgCtgTt22B.1.3770.009132
ORF1ab/nsp31311A1311VgCtgTt22B.1.3970.009709
ORF1ab/nsp31311A1311VgCtgTt22B.1.4970.00063
ORF1ab/nsp31311A1311VgCtgTt22B.1.5170.000854
ORF1ab/nsp31311A1311VgCtgTt22B.1.5210.00995
ORF1ab/nsp31311A1311VgCtgTt22B.1.910.004149
ORF1ab/nsp31311A1311VgCtgTt22C.370.000232
ORF1ab/nsp31311A1311VgCtgTt22D.20.00015
ORF1ab/nsp31311A1311VgCtgTt11AW.10.003049
ORF1ab/nsp31311A1311VgCtgTt11AY.1060.000335
ORF1ab/nsp31311A1311VgCtgTt11AY.1140.000231
ORF1ab/nsp31311A1311VgCtgTt11AY.1160.000287
ORF1ab/nsp31311A1311VgCtgTt11AY.116.10.000311
ORF1ab/nsp31311A1311VgCtgTt11AY.20.000356
ORF1ab/nsp31311A1311VgCtgTt11AY.29.10.000221
ORF1ab/nsp31311A1311VgCtgTt11AY.34.10.00051
ORF1ab/nsp31311A1311VgCtgTt11AY.540.000095
ORF1ab/nsp31311A1311VgCtgTt11AY.580.000907
ORF1ab/nsp31311A1311VgCtgTt11AY.670.000464
ORF1ab/nsp31311A1311VgCtgTt11AY.90.000068
ORF1ab/nsp31311A1311VgCtgTt11AY.930.000273
ORF1ab/nsp31311A1311VgCtgTt11AY.980.000079
ORF1ab/nsp31311A1311VgCtgTt11AY.99.20.000092
ORF1ab/nsp31311A1311VgCtgTt11B.1.1.1330.008475
ORF1ab/nsp31311A1311VgCtgTt11B.1.1.2070.001182
ORF1ab/nsp31311A1311VgCtgTt11B.1.1.2180.007692
ORF1ab/nsp31311A1311VgCtgTt11B.1.1.2320.001815
ORF1ab/nsp31311A1311VgCtgTt11B.1.1.2740.005051
ORF1ab/nsp31311A1311VgCtgTt11B.1.1.3010.001179
ORF1ab/nsp31311A1311VgCtgTt11B.1.1.3110.000358
ORF1ab/nsp31311A1311VgCtgTt11B.1.1.3530.020833
ORF1ab/nsp31311A1311VgCtgTt11B.1.1.370.000193
ORF1ab/nsp31311A1311VgCtgTt11B.1.1.3890.006061
ORF1ab/nsp31311A1311VgCtgTt11B.1.1.3930.111111
ORF1ab/nsp31311A1311VgCtgTt11B.1.1.5070.008696
ORF1ab/nsp31311A1311VgCtgTt11B.1.1110.001175
ORF1ab/nsp31311A1311VgCtgTt11B.1.160.320.004292
ORF1ab/nsp31311A1311VgCtgTt11B.1.177.120.000152
ORF1ab/nsp31311A1311VgCtgTt11B.1.177.350.000691
ORF1ab/nsp31311A1311VgCtgTt11B.1.177.40.000211
ORF1ab/nsp31311A1311VgCtgTt11B.1.177.70.000165
ORF1ab/nsp31311A1311VgCtgTt11B.1.177.850.005435
ORF1ab/nsp31311A1311VgCtgTt11B.1.2360.002053
ORF1ab/nsp31311A1311VgCtgTt11B.1.258.170.000104
ORF1ab/nsp31311A1311VgCtgTt11B.1.2640.012346
ORF1ab/nsp31311A1311VgCtgTt11B.1.2790.000514
ORF1ab/nsp31311A1311VgCtgTt11B.1.3050.002151
ORF1ab/nsp31311A1311VgCtgTt11B.1.3110.000275
ORF1ab/nsp31311A1311VgCtgTt11B.1.3130.006579
ORF1ab/nsp31311A1311VgCtgTt11B.1.36.290.000517
ORF1ab/nsp31311A1311VgCtgTt11B.1.36.380.001642
ORF1ab/nsp31311A1311VgCtgTt11B.1.36.80.001
ORF1ab/nsp31311A1311VgCtgTt11B.1.3630.012987
ORF1ab/nsp31311A1311VgCtgTt11B.1.3750.00082
ORF1ab/nsp31311A1311VgCtgTt11B.1.3960.000706
ORF1ab/nsp31311A1311VgCtgTt11B.1.4080.00369
ORF1ab/nsp31311A1311VgCtgTt11B.1.4200.010417
ORF1ab/nsp31311A1311VgCtgTt11B.1.4480.002625
ORF1ab/nsp31311A1311VgCtgTt11B.1.4590.004082
ORF1ab/nsp31311A1311VgCtgTt11B.1.4650.003802
ORF1ab/nsp31311A1311VgCtgTt11B.1.4700.001404
ORF1ab/nsp31311A1311VgCtgTt11B.1.5250.000113
ORF1ab/nsp31311A1311VgCtgTt11B.1.5460.003704
ORF1ab/nsp31311A1311VgCtgTt11B.1.5600.00463
ORF1ab/nsp31311A1311VgCtgTt11B.1.5750.000303
ORF1ab/nsp31311A1311VgCtgTt11B.1.5770.000687
ORF1ab/nsp31311A1311VgCtgTt11B.1.5880.00091
ORF1ab/nsp31311A1311VgCtgTt11B.1.6050.005952
ORF1ab/nsp31311A1311VgCtgTt11B.1.6190.000871
ORF1ab/nsp31311A1311VgCtgTt11B.1.6210.000089
ORF1ab/nsp31311A1311VgCtgTt11N.50.001767
ORF1ab/nsp31311A1311VgCtgTt11P.1.120.000484
ORF1ab/nsp31311A1311VgCtgTt11P.1.40.000977
ORF1ab/nsp31311A1311VgCtgTt11P.1.70.000319
ORF1ab/nsp31311A1311VgCtgTt11P.20.000187
ORF1ab/nsp31311A1311VgCtgTt11P.30.001595
ORF1ab/nsp31311A1311VgCtgTt11P.70.004367
ORF1ab/nsp31311A1311VgCtgTt11Q.10.000126
ORF1ab/nsp31311A1311VgCtgTt11Q.20.000613