CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = A1179V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31179A1179VA1997VnonsyngCagTa788578580.9965766254-6256
ORF1ab/nsp31179A1179VA1997VnonsyngCAgTT7885230.002916936254-6256
ORF1ab/nsp31179A1179VA1997VnonsyngCAgTG788540.0005072926254-6256

Details of the mutation A1179V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31179A1179VgCagTa78587885All0.001503
ORF1ab/nsp31179A1179VgCAgTT237885All0.000004
ORF1ab/nsp31179A1179VgCAgTG47885All0.000001
ORF1ab/nsp31179A1179VgCagTa25532578B.1.1.70.002286
ORF1ab/nsp31179A1179VgCAgTT212578B.1.1.70.000019
ORF1ab/nsp31179A1179VgCAgTG42578B.1.1.70.000004
ORF1ab/nsp31179A1179VgCagTa13091309B.1.36.270.999237
ORF1ab/nsp31179A1179VgCagTa488488AY.40.00076
ORF1ab/nsp31179A1179VgCagTa317317B.1.360.04625
ORF1ab/nsp31179A1179VgCagTa259259B.1.617.20.000975
ORF1ab/nsp31179A1179VgCagTa218218AY.860.180913
ORF1ab/nsp31179A1179VgCagTa204204AY.30.002029
ORF1ab/nsp31179A1179VgCagTa187187AY.250.001125
ORF1ab/nsp31179A1179VgCagTa170170B.1.4290.004
ORF1ab/nsp31179A1179VgCagTa167167AY.440.001016
ORF1ab/nsp31179A1179VgCagTa142142AY.1020.003765
ORF1ab/nsp31179A1179VgCagTa131131B.1.2790.067283
ORF1ab/nsp31179A1179VgCagTa120121B.10.001099
ORF1ab/nsp31179A1179VgCAgTT1121B.10.000009
ORF1ab/nsp31179A1179VgCagTa118118AY.430.000523
ORF1ab/nsp31179A1179VgCagTa113113B.1.20.000995
ORF1ab/nsp31179A1179VgCagTa109109B.1.177.120.016535
ORF1ab/nsp31179A1179VgCagTa103103AY.1030.00064
ORF1ab/nsp31179A1179VgCagTa7272B.1.5260.001692
ORF1ab/nsp31179A1179VgCagTa4949AY.290.000773
ORF1ab/nsp31179A1179VgCagTa4849P.10.000756
ORF1ab/nsp31179A1179VgCAgTT149P.10.000016
ORF1ab/nsp31179A1179VgCagTa4444AY.46.60.003177
ORF1ab/nsp31179A1179VgCagTa4242AY.9.20.001543
ORF1ab/nsp31179A1179VgCagTa3333AY.390.000815
ORF1ab/nsp31179A1179VgCagTa2626AY.50.000537
ORF1ab/nsp31179A1179VgCagTa2626B.1.10.000472
ORF1ab/nsp31179A1179VgCagTa2525B.1.1770.000329
ORF1ab/nsp31179A1179VgCagTa2525B.1.3510.000743
ORF1ab/nsp31179A1179VgCagTa2525B.1.36.90.080386
ORF1ab/nsp31179A1179VgCagTa2424G.11
ORF1ab/nsp31179A1179VgCagTa2323AY.99.20.00212
ORF1ab/nsp31179A1179VgCagTa2222B.1.2210.001563
ORF1ab/nsp31179A1179VgCagTa1919AY.98.10.00092
ORF1ab/nsp31179A1179VgCagTa1717AY.330.001135
ORF1ab/nsp31179A1179VgCagTa1717B.1.1.4160.015385
ORF1ab/nsp31179A1179VgCagTa1515AY.60.000617
ORF1ab/nsp31179A1179VgCagTa1414AY.470.000435
ORF1ab/nsp31179A1179VgCagTa1212B.1.2430.000835
ORF1ab/nsp31179A1179VgCagTa1212B.1.5360.285714
ORF1ab/nsp31179A1179VgCagTa1111AY.4.20.000239
ORF1ab/nsp31179A1179VgCagTa1010AY.200.000389
ORF1ab/nsp31179A1179VgCagTa1010B.1.177.320.013495
ORF1ab/nsp31179A1179VgCagTa99A0.003483
ORF1ab/nsp31179A1179VgCagTa99A.2.50.004491
ORF1ab/nsp31179A1179VgCagTa99AD.20.001971
ORF1ab/nsp31179A1179VgCagTa99AY.46.20.005718
ORF1ab/nsp31179A1179VgCagTa99AY.46.40.001481
ORF1ab/nsp31179A1179VgCagTa99B.1.1.5190.000357
ORF1ab/nsp31179A1179VgCagTa99B.550.026549
ORF1ab/nsp31179A1179VgCagTa88AY.1190.000282
ORF1ab/nsp31179A1179VgCagTa88AY.410.002352
ORF1ab/nsp31179A1179VgCagTa88B.1.1600.00025
ORF1ab/nsp31179A1179VgCagTa88B.1.177.620.009535
ORF1ab/nsp31179A1179VgCagTa88B.1.177.810.001515
ORF1ab/nsp31179A1179VgCagTa88B.1.4270.000404
ORF1ab/nsp31179A1179VgCagTa77AY.1000.000322
ORF1ab/nsp31179A1179VgCagTa77AY.230.000488
ORF1ab/nsp31179A1179VgCagTa77AY.260.000198
ORF1ab/nsp31179A1179VgCagTa77AY.39.10.000277
ORF1ab/nsp31179A1179VgCagTa77B.1.1.390.003568
ORF1ab/nsp31179A1179VgCagTa77C.370.000812
ORF1ab/nsp31179A1179VgCagTa77Q.10.000884
ORF1ab/nsp31179A1179VgCagTa66AY.360.000889
ORF1ab/nsp31179A1179VgCagTa66AY.460.000624
ORF1ab/nsp31179A1179VgCagTa66B.1.1.1380.036364
ORF1ab/nsp31179A1179VgCagTa66B.1.2580.000399
ORF1ab/nsp31179A1179VgCagTa66C.350.004644
ORF1ab/nsp31179A1179VgCagTa66D.20.00045
ORF1ab/nsp31179A1179VgCagTa66P.1.140.000287
ORF1ab/nsp31179A1179VgCagTa66P.20.00112
ORF1ab/nsp31179A1179VgCagTa55A.2.5.20.007862
ORF1ab/nsp31179A1179VgCagTa55AY.1170.000423
ORF1ab/nsp31179A1179VgCagTa55AY.4.50.000537
ORF1ab/nsp31179A1179VgCagTa55AY.510.004545
ORF1ab/nsp31179A1179VgCagTa55AY.850.002136
ORF1ab/nsp31179A1179VgCagTa55B0.000639
ORF1ab/nsp31179A1179VgCagTa55B.1.1.3170.002058
ORF1ab/nsp31179A1179VgCagTa55B.1.1.4200.00503
ORF1ab/nsp31179A1179VgCagTa44AY.1010.001962
ORF1ab/nsp31179A1179VgCagTa44AY.1130.00057
ORF1ab/nsp31179A1179VgCagTa44AY.340.000388
ORF1ab/nsp31179A1179VgCagTa44AY.4.30.003367
ORF1ab/nsp31179A1179VgCagTa44AY.420.000161
ORF1ab/nsp31179A1179VgCagTa44AY.650.002132
ORF1ab/nsp31179A1179VgCagTa44AY.7.10.000451
ORF1ab/nsp31179A1179VgCagTa44AY.840.00175
ORF1ab/nsp31179A1179VgCagTa44AY.980.000316
ORF1ab/nsp31179A1179VgCagTa44B.1.1.2310.012384
ORF1ab/nsp31179A1179VgCagTa44B.1.1.330.001684
ORF1ab/nsp31179A1179VgCagTa44B.1.177.830.005926
ORF1ab/nsp31179A1179VgCagTa44B.1.3610.005155
ORF1ab/nsp31179A1179VgCagTa44B.1.4680.022857
ORF1ab/nsp31179A1179VgCagTa44B.1.5660.076923
ORF1ab/nsp31179A1179VgCagTa44B.1.6370.000292
ORF1ab/nsp31179A1179VgCagTa44Q.30.00058
ORF1ab/nsp31179A1179VgCagTa33AY.1050.001929
ORF1ab/nsp31179A1179VgCagTa33AY.1160.00086
ORF1ab/nsp31179A1179VgCagTa33AY.1180.000188
ORF1ab/nsp31179A1179VgCagTa33AY.1200.000112
ORF1ab/nsp31179A1179VgCagTa33AY.130.000483
ORF1ab/nsp31179A1179VgCagTa33AY.29.10.000662
ORF1ab/nsp31179A1179VgCagTa33AY.350.000699
ORF1ab/nsp31179A1179VgCagTa33AY.610.000314
ORF1ab/nsp31179A1179VgCagTa33AY.930.000819
ORF1ab/nsp31179A1179VgCagTa33B.1.1.10.00098
ORF1ab/nsp31179A1179VgCagTa33B.1.1.1410.006036
ORF1ab/nsp31179A1179VgCagTa33B.1.1.2160.002671
ORF1ab/nsp31179A1179VgCagTa33B.1.1.2220.000612
ORF1ab/nsp31179A1179VgCagTa33B.1.1390.002199
ORF1ab/nsp31179A1179VgCagTa33B.1.177.210.000229
ORF1ab/nsp31179A1179VgCagTa33B.1.177.570.000843
ORF1ab/nsp31179A1179VgCagTa33B.1.22.10.09375
ORF1ab/nsp31179A1179VgCagTa33B.1.2340.000396
ORF1ab/nsp31179A1179VgCagTa33B.1.2400.000647
ORF1ab/nsp31179A1179VgCagTa33B.1.258.170.000312
ORF1ab/nsp31179A1179VgCagTa33B.1.2600.010033
ORF1ab/nsp31179A1179VgCagTa33B.1.3620.004622
ORF1ab/nsp31179A1179VgCagTa33B.1.3810.023438
ORF1ab/nsp31179A1179VgCagTa33B.1.438.10.000322
ORF1ab/nsp31179A1179VgCagTa33B.1.466.20.001174
ORF1ab/nsp31179A1179VgCagTa33B.1.617.10.000387
ORF1ab/nsp31179A1179VgCagTa33C.140.012987
ORF1ab/nsp31179A1179VgCagTa33P.1.150.000697
ORF1ab/nsp31179A1179VgCagTa22AY.270.000129
ORF1ab/nsp31179A1179VgCagTa22AY.5.30.000675
ORF1ab/nsp31179A1179VgCagTa22AY.5.40.000553
ORF1ab/nsp31179A1179VgCagTa22AY.760.009662
ORF1ab/nsp31179A1179VgCagTa22B.1.1.280.000622
ORF1ab/nsp31179A1179VgCagTa22B.1.1.4340.000697
ORF1ab/nsp31179A1179VgCagTa22B.1.1.500.001358
ORF1ab/nsp31179A1179VgCagTa22B.1.1.830.00542
ORF1ab/nsp31179A1179VgCagTa22B.1.177.440.001038
ORF1ab/nsp31179A1179VgCagTa22B.1.177.70.00033
ORF1ab/nsp31179A1179VgCagTa22B.1.221.10.005814
ORF1ab/nsp31179A1179VgCagTa22B.1.3110.000549
ORF1ab/nsp31179A1179VgCagTa22B.1.36.100.009569
ORF1ab/nsp31179A1179VgCagTa22B.1.36.160.002849
ORF1ab/nsp31179A1179VgCagTa22B.1.36.390.004435
ORF1ab/nsp31179A1179VgCagTa22B.1.416.10.003125
ORF1ab/nsp31179A1179VgCagTa22B.1.5250.000226
ORF1ab/nsp31179A1179VgCagTa22B.1.6090.000959
ORF1ab/nsp31179A1179VgCagTa22C.260.014706
ORF1ab/nsp31179A1179VgCagTa22C.360.001821
ORF1ab/nsp31179A1179VgCagTa22C.36.30.001134
ORF1ab/nsp31179A1179VgCagTa22P.1.10.000635
ORF1ab/nsp31179A1179VgCagTa22P.1.170.000324
ORF1ab/nsp31179A1179VgCagTa22P.1.70.000639
ORF1ab/nsp31179A1179VgCagTa22P.70.008734
ORF1ab/nsp31179A1179VgCagTa22Q.80.00033
ORF1ab/nsp31179A1179VgCagTa22R.10.00018
ORF1ab/nsp31179A1179VgCagTa11AY.10.000396
ORF1ab/nsp31179A1179VgCagTa11AY.1100.000113
ORF1ab/nsp31179A1179VgCagTa11AY.1110.000183
ORF1ab/nsp31179A1179VgCagTa11AY.116.10.000311
ORF1ab/nsp31179A1179VgCagTa11AY.120.10.000321
ORF1ab/nsp31179A1179VgCagTa11AY.240.000431
ORF1ab/nsp31179A1179VgCagTa11AY.300.000396
ORF1ab/nsp31179A1179VgCagTa11AY.34.10.00051
ORF1ab/nsp31179A1179VgCagTa11AY.4.2.10.000149
ORF1ab/nsp31179A1179VgCagTa11AY.4.40.000409
ORF1ab/nsp31179A1179VgCagTa11AY.570.000656
ORF1ab/nsp31179A1179VgCagTa11AY.680.000274
ORF1ab/nsp31179A1179VgCagTa11AY.700.000209
ORF1ab/nsp31179A1179VgCagTa11AY.710.000475
ORF1ab/nsp31179A1179VgCagTa11AY.730.000665
ORF1ab/nsp31179A1179VgCagTa11AY.750.000056
ORF1ab/nsp31179A1179VgCagTa11AY.80.000606
ORF1ab/nsp31179A1179VgCagTa11AY.880.000884
ORF1ab/nsp31179A1179VgCagTa11AY.90.000068
ORF1ab/nsp31179A1179VgCagTa11AY.9.10.000084
ORF1ab/nsp31179A1179VgCagTa11AY.920.000287
ORF1ab/nsp31179A1179VgCagTa11AY.940.000443
ORF1ab/nsp31179A1179VgCagTa11B.1.1.100.001115
ORF1ab/nsp31179A1179VgCagTa11B.1.1.1170.009709
ORF1ab/nsp31179A1179VgCagTa11B.1.1.1960.005714
ORF1ab/nsp31179A1179VgCagTa11B.1.1.2370.005405
ORF1ab/nsp31179A1179VgCagTa11B.1.1.2730.006757
ORF1ab/nsp31179A1179VgCagTa11B.1.1.2770.000759
ORF1ab/nsp31179A1179VgCagTa11B.1.1.2940.001266
ORF1ab/nsp31179A1179VgCagTa11B.1.1.3060.000438
ORF1ab/nsp31179A1179VgCagTa11B.1.1.3480.000796
ORF1ab/nsp31179A1179VgCagTa11B.1.1.40.002976
ORF1ab/nsp31179A1179VgCagTa11B.1.110.30.000718
ORF1ab/nsp31179A1179VgCagTa11B.1.1110.001175
ORF1ab/nsp31179A1179VgCagTa11B.1.160.310.008065
ORF1ab/nsp31179A1179VgCagTa11B.1.177.330.001645
ORF1ab/nsp31179A1179VgCagTa11B.1.177.430.001477
ORF1ab/nsp31179A1179VgCagTa11B.1.177.450.000381
ORF1ab/nsp31179A1179VgCagTa11B.1.177.730.000566
ORF1ab/nsp31179A1179VgCagTa11B.1.2100.002132
ORF1ab/nsp31179A1179VgCagTa11B.1.221.30.000833
ORF1ab/nsp31179A1179VgCagTa11B.1.3040.023256
ORF1ab/nsp31179A1179VgCagTa11B.1.3460.001311
ORF1ab/nsp31179A1179VgCagTa11B.1.36.190.009259
ORF1ab/nsp31179A1179VgCagTa11B.1.36.210.00216
ORF1ab/nsp31179A1179VgCagTa11B.1.36.220.001208
ORF1ab/nsp31179A1179VgCagTa11B.1.36.260.002857
ORF1ab/nsp31179A1179VgCagTa11B.1.36.310.001751
ORF1ab/nsp31179A1179VgCagTa11B.1.36.340.021277
ORF1ab/nsp31179A1179VgCagTa11B.1.36.360.000602
ORF1ab/nsp31179A1179VgCagTa11B.1.3670.000792
ORF1ab/nsp31179A1179VgCagTa11B.1.3710.001122
ORF1ab/nsp31179A1179VgCagTa11B.1.3830.009009
ORF1ab/nsp31179A1179VgCagTa11B.1.3950.007042
ORF1ab/nsp31179A1179VgCagTa11B.1.3960.000706
ORF1ab/nsp31179A1179VgCagTa11B.1.4090.000781
ORF1ab/nsp31179A1179VgCagTa11B.1.4160.001269
ORF1ab/nsp31179A1179VgCagTa11B.1.4280.00102
ORF1ab/nsp31179A1179VgCagTa11B.1.4560.003268
ORF1ab/nsp31179A1179VgCagTa11B.1.4590.004082
ORF1ab/nsp31179A1179VgCagTa11B.1.4930.025641
ORF1ab/nsp31179A1179VgCagTa11B.1.5210.004975
ORF1ab/nsp31179A1179VgCagTa11B.1.5370.02
ORF1ab/nsp31179A1179VgCagTa11B.1.5510.00129
ORF1ab/nsp31179A1179VgCagTa11B.1.5680.001111
ORF1ab/nsp31179A1179VgCagTa11B.1.5750.000303
ORF1ab/nsp31179A1179VgCagTa11B.1.5880.00091
ORF1ab/nsp31179A1179VgCagTa11B.1.5950.000261
ORF1ab/nsp31179A1179VgCagTa11B.1.6200.000946
ORF1ab/nsp31179A1179VgCagTa11B.1.6210.000089
ORF1ab/nsp31179A1179VgCagTa11B.310.003731
ORF1ab/nsp31179A1179VgCagTa11B.400.000364
ORF1ab/nsp31179A1179VgCagTa11C.300.001727
ORF1ab/nsp31179A1179VgCagTa11P.1.20.001156
ORF1ab/nsp31179A1179VgCagTa11P.30.001595

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.