CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = A1179T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31179A1179TA1997TnonsynGcaAca3363310.9851196254-6256
ORF1ab/nsp31179A1179TA1997TnonsynGcAAcT33630.008928576254-6256
ORF1ab/nsp31179A1179TA1997TnonsynGcAAcC33620.005952386254-6256

Details of the mutation A1179T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31179A1179TGcaAca331336All0.000063
ORF1ab/nsp31179A1179TGcAAcT3336All0.000001
ORF1ab/nsp31179A1179TGcAAcC2336All0
ORF1ab/nsp31179A1179TGcaAca9494AY.40.000146
ORF1ab/nsp31179A1179TGcaAca3134B.1.1.70.000028
ORF1ab/nsp31179A1179TGcAAcT334B.1.1.70.000003
ORF1ab/nsp31179A1179TGcaAca2727B.1.4130.114894
ORF1ab/nsp31179A1179TGcaAca2626B.1.5260.000611
ORF1ab/nsp31179A1179TGcaAca2424AY.250.000144
ORF1ab/nsp31179A1179TGcaAca1717AY.1030.000106
ORF1ab/nsp31179A1179TGcaAca1717B.10.000156
ORF1ab/nsp31179A1179TGcaAca1414B.1.1.5190.000556
ORF1ab/nsp31179A1179TGcaAca1313B.1.3110.003569
ORF1ab/nsp31179A1179TGcaAca1313B.1.617.20.000049
ORF1ab/nsp31179A1179TGcaAca99AY.260.000255
ORF1ab/nsp31179A1179TGcaAca78AY.430.000031
ORF1ab/nsp31179A1179TGcAAcC18AY.430.000004
ORF1ab/nsp31179A1179TGcaAca66B.1.177.600.001311
ORF1ab/nsp31179A1179TGcaAca55AY.440.00003
ORF1ab/nsp31179A1179TGcaAca44AY.1020.000106
ORF1ab/nsp31179A1179TGcaAca33AY.390.000074
ORF1ab/nsp31179A1179TGcaAca22AY.330.000134
ORF1ab/nsp31179A1179TGcaAca22AY.360.000296
ORF1ab/nsp31179A1179TGcaAca22B.1.4290.000047
ORF1ab/nsp31179A1179TGcaAca22B.1.5960.000174
ORF1ab/nsp31179A1179TGcaAca22P.10.000032
ORF1ab/nsp31179A1179TGcaAca11AY.1000.000046
ORF1ab/nsp31179A1179TGcaAca11AY.1210.000135
ORF1ab/nsp31179A1179TGcaAca11AY.30.00001
ORF1ab/nsp31179A1179TGcaAca11AY.420.00004
ORF1ab/nsp31179A1179TGcaAca11B0.000128
ORF1ab/nsp31179A1179TGcaAca11B.1.1.2140.000055
ORF1ab/nsp31179A1179TGcaAca11B.1.1.460.004367
ORF1ab/nsp31179A1179TGcaAca11B.1.20.000009
ORF1ab/nsp31179A1179TGcaAca11B.1.2580.000067
ORF1ab/nsp31179A1179TGcaAca11B.1.4270.00005
ORF1ab/nsp31179A1179TGcaAca11B.1.88.10.004808
ORF1ab/nsp31179A1179TGcAAcC11C.350.000774

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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