CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = A1179S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31179A1179SA1997SnonsynGcaTca1771710.9661026254-6256
ORF1ab/nsp31179A1179SA1997SnonsynGcATcT17740.02259896254-6256
ORF1ab/nsp31179A1179SA1997SnonsynGCAAGT17720.01129946254-6256

Details of the mutation A1179S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31179A1179SGcaTca171177All0.000033
ORF1ab/nsp31179A1179SGcATcT4177All0.000001
ORF1ab/nsp31179A1179SGCAAGT2177All0
ORF1ab/nsp31179A1179SGcaTca5353AY.920.015226
ORF1ab/nsp31179A1179SGcaTca4545AY.40.00007
ORF1ab/nsp31179A1179SGcaTca1016B.1.1.70.000009
ORF1ab/nsp31179A1179SGcATcT416B.1.1.70.000004
ORF1ab/nsp31179A1179SGCAAGT216B.1.1.70.000002
ORF1ab/nsp31179A1179SGcaTca1010B.1.5260.000235
ORF1ab/nsp31179A1179SGcaTca99P.10.000142
ORF1ab/nsp31179A1179SGcaTca66AY.450.00073
ORF1ab/nsp31179A1179SGcaTca55B.10.000046
ORF1ab/nsp31179A1179SGcaTca44B.1.617.20.000015
ORF1ab/nsp31179A1179SGcaTca22AY.1180.000125
ORF1ab/nsp31179A1179SGcaTca22B.1.5250.000226
ORF1ab/nsp31179A1179SGcaTca22D.20.00015
ORF1ab/nsp31179A1179SGcaTca11AY.1040.001984
ORF1ab/nsp31179A1179SGcaTca11AY.190.00114
ORF1ab/nsp31179A1179SGcaTca11AY.230.00007
ORF1ab/nsp31179A1179SGcaTca11AY.290.000016
ORF1ab/nsp31179A1179SGcaTca11AY.330.000067
ORF1ab/nsp31179A1179SGcaTca11AY.39.10.00004
ORF1ab/nsp31179A1179SGcaTca11AY.430.000004
ORF1ab/nsp31179A1179SGcaTca11AY.460.000104
ORF1ab/nsp31179A1179SGcaTca11B.1.160.260.002421
ORF1ab/nsp31179A1179SGcaTca11B.1.177.70.000165
ORF1ab/nsp31179A1179SGcaTca11B.1.177.730.000566
ORF1ab/nsp31179A1179SGcaTca11B.1.20.000009
ORF1ab/nsp31179A1179SGcaTca11B.1.3200.001245
ORF1ab/nsp31179A1179SGcaTca11B.1.351.30.000876
ORF1ab/nsp31179A1179SGcaTca11B.1.36.120.009615
ORF1ab/nsp31179A1179SGcaTca11B.1.36.390.002217
ORF1ab/nsp31179A1179SGcaTca11B.1.36.70.004
ORF1ab/nsp31179A1179SGcaTca11B.1.4160.001269
ORF1ab/nsp31179A1179SGcaTca11B.1.5170.000427
ORF1ab/nsp31179A1179SGcaTca11B.1.5760.000907
ORF1ab/nsp31179A1179SGcaTca11B.1.6310.003367
ORF1ab/nsp31179A1179SGcaTca11B.1.780.008547
ORF1ab/nsp31179A1179SGcaTca11P.1.140.000048

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.