CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1120 | A1120S | A1938S | nonsyn | Gct | Tct | 1066 | 1063 | 0.997186 | 6077-6079 |
ORF1ab/nsp3 | 1120 | A1120S | A1938S | nonsyn | GCT | AGC | 1066 | 2 | 0.00187617 | 6077-6079 |
ORF1ab/nsp3 | 1120 | A1120S | A1938S | nonsyn | GcT | TcA | 1066 | 1 | 0.000938086 | 6077-6079 |
Details of the mutation A1120S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 1063 | 1066 | All | 0.000203 |
ORF1ab/nsp3 | 1120 | A1120S | GCT | AGC | 2 | 1066 | All | 0 |
ORF1ab/nsp3 | 1120 | A1120S | GcT | TcA | 1 | 1066 | All | 0 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 463 | 463 | B.1.36.21 | 1 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 169 | 169 | B.1.1.7 | 0.000151 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 86 | 86 | AY.4 | 0.000134 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 36 | 36 | AY.43 | 0.000159 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 30 | 30 | P.1 | 0.000473 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 26 | 26 | B.1.617.2 | 0.000098 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 16 | 16 | AY.25 | 0.000096 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 16 | 16 | AY.44 | 0.000097 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 16 | 16 | B.1.177 | 0.000211 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 15 | 15 | B.1.1.326 | 0.026408 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 15 | 15 | B.1.2 | 0.000132 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 13 | 13 | AY.103 | 0.000081 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 11 | 12 | AY.3 | 0.000109 |
ORF1ab/nsp3 | 1120 | A1120S | GcT | TcA | 1 | 12 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 11 | 11 | B.1 | 0.000101 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 10 | 10 | AY.67 | 0.004643 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 8 | 8 | AY.42 | 0.000322 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 7 | 7 | AY.29 | 0.00011 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 6 | 6 | AY.20 | 0.000233 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 4 | 4 | B.1.177.58 | 0.005326 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 4 | 4 | B.1.36.26 | 0.011429 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 4 | 4 | B.1.420 | 0.041667 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 3 | 3 | B.1.320 | 0.003736 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 3 | 3 | Q.8 | 0.000495 |
ORF1ab/nsp3 | 1120 | A1120S | GCT | AGC | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 2 | 2 | B.1.435 | 0.022727 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 1 | 1 | B.1.1.417 | 0.002703 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 1 | 1 | B.1.344 | 0.008197 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 1 | 1 | B.1.537 | 0.02 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 1 | 1 | B.1.610 | 0.003546 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 1120 | A1120S | Gct | Tct | 1 | 1 | P.1.14 | 0.000048 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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