CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 995 & Codon = caT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3995Q995HQ1813HnonsyncaGcaT154614150.9152655702-5704

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3995Q995HcaGcaT14151546All0.000271
ORF1ab/nsp3995Q995HcaGcaT583583B.1.1260.743622
ORF1ab/nsp3995Q995HcaGcaT107107AY.430.000474
ORF1ab/nsp3995Q995HcaGcaT1100AY.260.000028
ORF1ab/nsp3995Q995HcaGcaT9595B.1.1.70.000085
ORF1ab/nsp3995Q995HcaGcaT6060AY.10.023744
ORF1ab/nsp3995Q995HcaGcaT4754AY.40.000073
ORF1ab/nsp3995Q995HcaGcaT4545B.1.1.3110.016117
ORF1ab/nsp3995Q995HcaGcaT4243B.10.000385
ORF1ab/nsp3995Q995HcaGcaT4141AY.1030.000255
ORF1ab/nsp3995Q995HcaGcaT3939B.1.617.20.000147
ORF1ab/nsp3995Q995HcaGcaT2828AY.470.000871
ORF1ab/nsp3995Q995HcaGcaT2727B.1.1600.000842
ORF1ab/nsp3995Q995HcaGcaT2323B.1.258.30.038526
ORF1ab/nsp3995Q995HcaGcaT2020B.1.466.20.007825
ORF1ab/nsp3995Q995HcaGcaT1919B.1.1280.012071
ORF1ab/nsp3995Q995HcaGcaT1515B.1.5960.001307
ORF1ab/nsp3995Q995HcaGcaT1313B.1.10.000236
ORF1ab/nsp3995Q995HcaGcaT1313B.1.1.2220.002652
ORF1ab/nsp3995Q995HcaGcaT1212AY.1210.001624
ORF1ab/nsp3995Q995HcaGcaT112AY.5.40.000277
ORF1ab/nsp3995Q995HcaGcaT1111AY.200.000428
ORF1ab/nsp3995Q995HcaGcaT1111B.1.1.5190.000437
ORF1ab/nsp3995Q995HcaGcaT810AY.1020.000212
ORF1ab/nsp3995Q995HcaGcaT1010B.1.1.4480.020325
ORF1ab/nsp3995Q995HcaGcaT99AY.250.000054
ORF1ab/nsp3995Q995HcaGcaT99AY.330.000601
ORF1ab/nsp3995Q995HcaGcaT88B.1.1.1550.571429
ORF1ab/nsp3995Q995HcaGcaT66AY.50.000124
ORF1ab/nsp3995Q995HcaGcaT66C.370.000696
ORF1ab/nsp3995Q995HcaGcaT66D.20.00045
ORF1ab/nsp3995Q995HcaGcaT55AY.30.00005
ORF1ab/nsp3995Q995HcaGcaT55AY.980.000395
ORF1ab/nsp3995Q995HcaGcaT44AY.230.000279
ORF1ab/nsp3995Q995HcaGcaT33AY.1200.000112
ORF1ab/nsp3995Q995HcaGcaT33AY.290.000047
ORF1ab/nsp3995Q995HcaGcaT33AY.39.10.000119
ORF1ab/nsp3995Q995HcaGcaT33AY.4.20.000065
ORF1ab/nsp3995Q995HcaGcaT33AY.440.000018
ORF1ab/nsp3995Q995HcaGcaT33B.1.1.2140.000166
ORF1ab/nsp3995Q995HcaGcaT33B.1.20.000026
ORF1ab/nsp3995Q995HcaGcaT33B.1.258.170.000312
ORF1ab/nsp3995Q995HcaGcaT33B.1.617.10.000387
ORF1ab/nsp3995Q995HcaGcaT33P.10.000047
ORF1ab/nsp3995Q995HcaGcaT33P.1.140.000143
ORF1ab/nsp3995Q995HcaGcaT12AY.390.000025
ORF1ab/nsp3995Q995HcaGcaT22AY.46.40.000329
ORF1ab/nsp3995Q995HcaGcaT22B.1.1.580.010753
ORF1ab/nsp3995Q995HcaGcaT22B.1.3510.000059
ORF1ab/nsp3995Q995HcaGcaT22B.1.6200.001892
ORF1ab/nsp3995Q995HcaGcaT22B.1.6210.000177
ORF1ab/nsp3995Q995HcaGcaT11A0.000387
ORF1ab/nsp3995Q995HcaGcaT11A.2.50.000499
ORF1ab/nsp3995Q995HcaGcaT11AY.1190.000035
ORF1ab/nsp3995Q995HcaGcaT11AY.340.000097
ORF1ab/nsp3995Q995HcaGcaT11AY.360.000148
ORF1ab/nsp3995Q995HcaGcaT11AY.4.40.000409
ORF1ab/nsp3995Q995HcaGcaT11AY.420.00004
ORF1ab/nsp3995Q995HcaGcaT11AY.46.60.000072
ORF1ab/nsp3995Q995HcaGcaT11AY.540.000095
ORF1ab/nsp3995Q995HcaGcaT11AY.650.000533
ORF1ab/nsp3995Q995HcaGcaT11AY.740.000116
ORF1ab/nsp3995Q995HcaGcaT11AY.80.000606
ORF1ab/nsp3995Q995HcaGcaT11AY.90.000068
ORF1ab/nsp3995Q995HcaGcaT11AY.9.20.000037
ORF1ab/nsp3995Q995HcaGcaT11AY.99.20.000092
ORF1ab/nsp3995Q995HcaGcaT11B0.000128
ORF1ab/nsp3995Q995HcaGcaT11B.1.1.2630.001558
ORF1ab/nsp3995Q995HcaGcaT11B.1.1.3060.000438
ORF1ab/nsp3995Q995HcaGcaT11B.1.1.3170.000412
ORF1ab/nsp3995Q995HcaGcaT11B.1.1.4330.001425
ORF1ab/nsp3995Q995HcaGcaT11B.1.1.630.000386
ORF1ab/nsp3995Q995HcaGcaT11B.1.1.700.000341
ORF1ab/nsp3995Q995HcaGcaT11B.1.1200.007692
ORF1ab/nsp3995Q995HcaGcaT11B.1.177.570.000281
ORF1ab/nsp3995Q995HcaGcaT11B.1.2580.000067
ORF1ab/nsp3995Q995HcaGcaT11B.1.258.140.00098
ORF1ab/nsp3995Q995HcaGcaT11B.1.258.220.002667
ORF1ab/nsp3995Q995HcaGcaT11B.1.3320.003497
ORF1ab/nsp3995Q995HcaGcaT11B.1.360.000146
ORF1ab/nsp3995Q995HcaGcaT11B.1.4110.003704
ORF1ab/nsp3995Q995HcaGcaT11B.1.5250.000113
ORF1ab/nsp3995Q995HcaGcaT11B.1.5260.000024
ORF1ab/nsp3995Q995HcaGcaT11B.1.575.10.002439
ORF1ab/nsp3995Q995HcaGcaT11B.1.5760.000907
ORF1ab/nsp3995Q995HcaGcaT11B.1.6280.000352
ORF1ab/nsp3995Q995HcaGcaT11B.1.840.020833
ORF1ab/nsp3995Q995HcaGcaT11B.400.000364
ORF1ab/nsp3995Q995HcaGcaT11B.6.60.000889
ORF1ab/nsp3995Q995HcaGcaT11C.1.20.004255
ORF1ab/nsp3995Q995HcaGcaT11C.36.3.10.002717
ORF1ab/nsp3995Q995HcaGcaT11D.30.005917
ORF1ab/nsp3995Q995HcaGcaT11P.1.70.000319

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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