CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 995

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3995Q995HQ1813HnonsyncaGcaT154614150.9152655702-5704
ORF1ab/nsp3995Q995HQ1813HnonsyncaGcaC15461310.08473485702-5704
ORF1ab/nsp3995Q995QQ1813QsyncaGcaA55855815702-5704
ORF1ab/nsp3995Q995LQ1813LnonsyncAgcTg3242430.755702-5704
ORF1ab/nsp3995Q995LQ1813LnonsyncAGcTA324810.255702-5704
ORF1ab/nsp3995Q995RQ1813RnonsyncAgcGg1451440.9931035702-5704
ORF1ab/nsp3995Q995RQ1813RnonsyncAGcGA14510.006896555702-5704
ORF1ab/nsp3995Q995del1Q1813del1delcAgc-g80790.98755702-5704
ORF1ab/nsp3995Q995del1Q1813del1delcaGca-8010.01255702-5704
ORF1ab/nsp3995Q995PQ1813PnonsyncAgcCg737315702-5704
ORF1ab/nsp3995Q995EQ1813EnonsynCagGag404015702-5704
ORF1ab/nsp3995Q995KQ1813KnonsynCagAag373715702-5704
ORF1ab/nsp3995Q995delQ1813deldelCAG---262615702-5704
ORF1ab/nsp3995Q995XQ1813XnonsynCagTag17160.9411765702-5704
ORF1ab/nsp3995Q995XQ1813XnonsynCaGTaA1710.05882355702-5704

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3995Q995HcaGcaT14151546All0.000271
ORF1ab/nsp3995Q995HcaGcaC1311546All0.000025
ORF1ab/nsp3995Q995HcaGcaT583583B.1.1260.743622
ORF1ab/nsp3995Q995QcaGcaA558558All0.000107
ORF1ab/nsp3995Q995QcaGcaA386386AY.40.000601
ORF1ab/nsp3995Q995LcAgcTg243324All0.000046
ORF1ab/nsp3995Q995LcAGcTA81324All0.000015
ORF1ab/nsp3995Q995RcAgcGg144145All0.000028
ORF1ab/nsp3995Q995RcAGcGA1145All0
ORF1ab/nsp3995Q995LcAgcTg141141B.1.20.001242
ORF1ab/nsp3995Q995HcaGcaT107107AY.430.000474
ORF1ab/nsp3995Q995HcaGcaC99100AY.260.002803
ORF1ab/nsp3995Q995HcaGcaT1100AY.260.000028
ORF1ab/nsp3995Q995HcaGcaT9595B.1.1.70.000085
ORF1ab/nsp3995Q995del1cAgc-g7980All0.000015
ORF1ab/nsp3995Q995del1caGca-180All0
ORF1ab/nsp3995Q995PcAgcCg7373All0.000014
ORF1ab/nsp3995Q995del1cAgc-g6666B.1.1.70.000059
ORF1ab/nsp3995Q995HcaGcaT6060AY.10.023744
ORF1ab/nsp3995Q995HcaGcaT4754AY.40.000073
ORF1ab/nsp3995Q995HcaGcaC754AY.40.000011
ORF1ab/nsp3995Q995LcAgcTg5151AY.440.00031
ORF1ab/nsp3995Q995HcaGcaT4545B.1.1.3110.016117
ORF1ab/nsp3995Q995HcaGcaT4243B.10.000385
ORF1ab/nsp3995Q995HcaGcaC143B.10.000009
ORF1ab/nsp3995Q995HcaGcaT4141AY.1030.000255
ORF1ab/nsp3995Q995ECagGag4040All0.000008
ORF1ab/nsp3995Q995HcaGcaT3939B.1.617.20.000147
ORF1ab/nsp3995Q995KCagAag3737All0.000007
ORF1ab/nsp3995Q995PcAgcCg3636AY.98.10.001744
ORF1ab/nsp3995Q995ECagGag3434B.1.1770.000448
ORF1ab/nsp3995Q995RcAgcGg3131AY.250.000186
ORF1ab/nsp3995Q995QcaGcaA3030R.10.0027
ORF1ab/nsp3995Q995QcaGcaA2929B.1.617.20.000109
ORF1ab/nsp3995Q995HcaGcaT2828AY.470.000871
ORF1ab/nsp3995Q995HcaGcaT2727B.1.1600.000842
ORF1ab/nsp3995Q995delCAG---2626All0.000005
ORF1ab/nsp3995Q995LcAGcTA2526B.1.1770.000329
ORF1ab/nsp3995Q995LcAgcTg126B.1.1770.000013
ORF1ab/nsp3995Q995QcaGcaA2323B.1.1.70.000021
ORF1ab/nsp3995Q995HcaGcaT2323B.1.258.30.038526
ORF1ab/nsp3995Q995HcaGcaT2020B.1.466.20.007825
ORF1ab/nsp3995Q995HcaGcaT1919B.1.1280.012071
ORF1ab/nsp3995Q995XCagTag1617All0.000003
ORF1ab/nsp3995Q995XCaGTaA117All0
ORF1ab/nsp3995Q995LcAgcTg1416B.1.1.70.000013
ORF1ab/nsp3995Q995LcAGcTA216B.1.1.70.000002
ORF1ab/nsp3995Q995RcAgcGg1515B.1.4290.000353
ORF1ab/nsp3995Q995HcaGcaT1515B.1.5960.001307
ORF1ab/nsp3995Q995RcAgcGg1414B.1.5820.006869
ORF1ab/nsp3995Q995LcAGcTA1213AY.1030.000075
ORF1ab/nsp3995Q995LcAgcTg113AY.1030.000006
ORF1ab/nsp3995Q995HcaGcaT1313B.1.10.000236
ORF1ab/nsp3995Q995HcaGcaT1313B.1.1.2220.002652
ORF1ab/nsp3995Q995HcaGcaT1212AY.1210.001624
ORF1ab/nsp3995Q995PcAgcCg1212AY.440.000073
ORF1ab/nsp3995Q995HcaGcaC1112AY.5.40.003044
ORF1ab/nsp3995Q995HcaGcaT112AY.5.40.000277
ORF1ab/nsp3995Q995QcaGcaA1111AY.1020.000292
ORF1ab/nsp3995Q995HcaGcaT1111AY.200.000428
ORF1ab/nsp3995Q995HcaGcaT1111B.1.1.5190.000437
ORF1ab/nsp3995Q995HcaGcaT810AY.1020.000212
ORF1ab/nsp3995Q995HcaGcaC210AY.1020.000053
ORF1ab/nsp3995Q995HcaGcaT1010B.1.1.4480.020325
ORF1ab/nsp3995Q995RcAgcGg99AY.1030.000056
ORF1ab/nsp3995Q995HcaGcaT99AY.250.000054
ORF1ab/nsp3995Q995HcaGcaT99AY.330.000601
ORF1ab/nsp3995Q995QcaGcaA99AY.430.00004
ORF1ab/nsp3995Q995RcAgcGg99AY.60.00037
ORF1ab/nsp3995Q995LcAgcTg99B.10.000082
ORF1ab/nsp3995Q995RcAgcGg88B.10.000073
ORF1ab/nsp3995Q995HcaGcaT88B.1.1.1550.571429
ORF1ab/nsp3995Q995LcAgcTg58P.10.000079
ORF1ab/nsp3995Q995LcAGcTA38P.10.000047
ORF1ab/nsp3995Q995RcAgcGg77AY.120.10.002247
ORF1ab/nsp3995Q995QcaGcaA77AY.200.000272
ORF1ab/nsp3995Q995LcAgcTg77B.1.1.1570.006393
ORF1ab/nsp3995Q995delCAG---77B.1.1.70.000006
ORF1ab/nsp3995Q995QcaGcaA77B.1.20.000062
ORF1ab/nsp3995Q995RcAgcGg77B.1.617.20.000026
ORF1ab/nsp3995Q995PcAgcCg77B.1.6260.04
ORF1ab/nsp3995Q995HcaGcaT66AY.50.000124
ORF1ab/nsp3995Q995HcaGcaC66B.1.177.750.006243
ORF1ab/nsp3995Q995HcaGcaT66C.370.000696
ORF1ab/nsp3995Q995HcaGcaT66D.20.00045
ORF1ab/nsp3995Q995QcaGcaA55AY.1190.000177
ORF1ab/nsp3995Q995HcaGcaT55AY.30.00005
ORF1ab/nsp3995Q995KCagAag55AY.40.000008
ORF1ab/nsp3995Q995LcAGcTA45AY.430.000018
ORF1ab/nsp3995Q995LcAgcTg15AY.430.000004
ORF1ab/nsp3995Q995RcAgcGg55AY.440.00003
ORF1ab/nsp3995Q995HcaGcaT55AY.980.000395
ORF1ab/nsp3995Q995KCagAag55B.10.000046
ORF1ab/nsp3995Q995QcaGcaA55B.10.000046
ORF1ab/nsp3995Q995QcaGcaA55B.1.1770.000066
ORF1ab/nsp3995Q995LcAgcTg45B.1.617.20.000015
ORF1ab/nsp3995Q995LcAGcTA15B.1.617.20.000004
ORF1ab/nsp3995Q995QcaGcaA44AY.1030.000025
ORF1ab/nsp3995Q995HcaGcaT44AY.230.000279
ORF1ab/nsp3995Q995LcAGcTA44AY.250.000024
ORF1ab/nsp3995Q995KCagAag44AY.260.000113
ORF1ab/nsp3995Q995RcAgcGg44AY.30.00004
ORF1ab/nsp3995Q995RcAgcGg44AY.40.000006
ORF1ab/nsp3995Q995LcAgcTg34B.1.10.000054
ORF1ab/nsp3995Q995LcAGcTA14B.1.10.000018
ORF1ab/nsp3995Q995PcAgcCg44B.1.1.70.000004
ORF1ab/nsp3995Q995LcAGcTA44B.1.258.170.000416
ORF1ab/nsp3995Q995QcaGcaA44B.1.4970.001259
ORF1ab/nsp3995Q995PcAgcCg33AY.1030.000019
ORF1ab/nsp3995Q995HcaGcaT33AY.1200.000112
ORF1ab/nsp3995Q995HcaGcaT33AY.290.000047
ORF1ab/nsp3995Q995HcaGcaT33AY.39.10.000119
ORF1ab/nsp3995Q995LcAGcTA33AY.40.000005
ORF1ab/nsp3995Q995HcaGcaT33AY.4.20.000065
ORF1ab/nsp3995Q995KCagAag33AY.430.000013
ORF1ab/nsp3995Q995HcaGcaT33AY.440.000018
ORF1ab/nsp3995Q995QcaGcaA33AY.440.000018
ORF1ab/nsp3995Q995QcaGcaA33AY.460.000312
ORF1ab/nsp3995Q995RcAgcGg33AY.50.000062
ORF1ab/nsp3995Q995QcaGcaA33AY.720.004082
ORF1ab/nsp3995Q995XCagTag33B.10.000027
ORF1ab/nsp3995Q995HcaGcaT33B.1.1.2140.000166
ORF1ab/nsp3995Q995RcAgcGg33B.1.1.70.000003
ORF1ab/nsp3995Q995del1cAgc-g33B.1.177.820.001432
ORF1ab/nsp3995Q995HcaGcaT33B.1.20.000026
ORF1ab/nsp3995Q995RcAgcGg33B.1.20.000026
ORF1ab/nsp3995Q995QcaGcaA33B.1.2400.000647
ORF1ab/nsp3995Q995HcaGcaT33B.1.258.170.000312
ORF1ab/nsp3995Q995del1cAgc-g33B.1.3510.000089
ORF1ab/nsp3995Q995RcAgcGg33B.1.36.10.003421
ORF1ab/nsp3995Q995LcAGcTA33B.1.4290.000071
ORF1ab/nsp3995Q995HcaGcaT33B.1.617.10.000387
ORF1ab/nsp3995Q995HcaGcaT33P.10.000047
ORF1ab/nsp3995Q995HcaGcaT33P.1.140.000143
ORF1ab/nsp3995Q995RcAgcGg22AY.1020.000053
ORF1ab/nsp3995Q995KCagAag22AY.1030.000012
ORF1ab/nsp3995Q995LcAGcTA22AY.1210.000271
ORF1ab/nsp3995Q995PcAgcCg22AY.200.000078
ORF1ab/nsp3995Q995LcAGcTA22AY.260.000057
ORF1ab/nsp3995Q995QcaGcaA22AY.260.000057
ORF1ab/nsp3995Q995LcAGcTA22AY.30.00002
ORF1ab/nsp3995Q995LcAGcTA22AY.390.000049
ORF1ab/nsp3995Q995HcaGcaT12AY.390.000025
ORF1ab/nsp3995Q995HcaGcaC12AY.390.000025
ORF1ab/nsp3995Q995HcaGcaT22AY.46.40.000329
ORF1ab/nsp3995Q995LcAGcTA12AY.50.000021
ORF1ab/nsp3995Q995LcAgcTg12AY.50.000021
ORF1ab/nsp3995Q995del1cAgc-g22AY.520.001629
ORF1ab/nsp3995Q995QcaGcaA22AY.530.000575
ORF1ab/nsp3995Q995ECagGag22AY.980.000158
ORF1ab/nsp3995Q995HcaGcaT22B.1.1.580.010753
ORF1ab/nsp3995Q995del1cAgc-g22B.1.1600.000062
ORF1ab/nsp3995Q995XCagTag22B.1.20.000018
ORF1ab/nsp3995Q995HcaGcaT22B.1.3510.000059
ORF1ab/nsp3995Q995HcaGcaC22B.1.3560.003454
ORF1ab/nsp3995Q995delCAG---22B.1.360.000292
ORF1ab/nsp3995Q995LcAGcTA22B.1.4090.001563
ORF1ab/nsp3995Q995RcAgcGg22B.1.5390.035088
ORF1ab/nsp3995Q995delCAG---22B.1.617.20.000008
ORF1ab/nsp3995Q995PcAgcCg22B.1.617.20.000008
ORF1ab/nsp3995Q995KCagAag22B.1.617.20.000008
ORF1ab/nsp3995Q995HcaGcaT22B.1.6200.001892
ORF1ab/nsp3995Q995HcaGcaT22B.1.6210.000177
ORF1ab/nsp3995Q995RcAGcGA12P.1.150.000232
ORF1ab/nsp3995Q995RcAgcGg12P.1.150.000232
ORF1ab/nsp3995Q995XCagTag110.055556
ORF1ab/nsp3995Q995HcaGcaT11A0.000387
ORF1ab/nsp3995Q995KCagAag11A0.000387
ORF1ab/nsp3995Q995delCAG---11A.2.20.001689
ORF1ab/nsp3995Q995XCagTag11A.2.20.001689
ORF1ab/nsp3995Q995HcaGcaT11A.2.50.000499
ORF1ab/nsp3995Q995KCagAag11AY.1000.000046
ORF1ab/nsp3995Q995RcAgcGg11AY.1000.000046
ORF1ab/nsp3995Q995KCagAag11AY.1020.000027
ORF1ab/nsp3995Q995RcAgcGg11AY.1110.000183
ORF1ab/nsp3995Q995HcaGcaC11AY.1130.000142
ORF1ab/nsp3995Q995PcAgcCg11AY.1130.000142
ORF1ab/nsp3995Q995QcaGcaA11AY.1130.000142
ORF1ab/nsp3995Q995QcaGcaA11AY.1140.000231
ORF1ab/nsp3995Q995QcaGcaA11AY.1180.000063
ORF1ab/nsp3995Q995RcAgcGg11AY.1180.000063
ORF1ab/nsp3995Q995HcaGcaT11AY.1190.000035
ORF1ab/nsp3995Q995QcaGcaA11AY.140.000088
ORF1ab/nsp3995Q995KCagAag11AY.200.000039
ORF1ab/nsp3995Q995PcAgcCg11AY.230.00007
ORF1ab/nsp3995Q995KCagAag11AY.240.000431
ORF1ab/nsp3995Q995QcaGcaA11AY.250.000006
ORF1ab/nsp3995Q995KCagAag11AY.250.000006
ORF1ab/nsp3995Q995delCAG---11AY.260.000028
ORF1ab/nsp3995Q995QcaGcaA11AY.30.00001
ORF1ab/nsp3995Q995KCagAag11AY.330.000067
ORF1ab/nsp3995Q995RcAgcGg11AY.330.000067
ORF1ab/nsp3995Q995LcAGcTA11AY.330.000067
ORF1ab/nsp3995Q995HcaGcaT11AY.340.000097
ORF1ab/nsp3995Q995QcaGcaA11AY.340.000097
ORF1ab/nsp3995Q995HcaGcaT11AY.360.000148
ORF1ab/nsp3995Q995QcaGcaA11AY.390.000025
ORF1ab/nsp3995Q995PcAgcCg11AY.390.000025
ORF1ab/nsp3995Q995XCagTag11AY.40.000002
ORF1ab/nsp3995Q995HcaGcaT11AY.4.40.000409
ORF1ab/nsp3995Q995LcAgcTg11AY.4.50.000107
ORF1ab/nsp3995Q995HcaGcaT11AY.420.00004
ORF1ab/nsp3995Q995KCagAag11AY.420.00004
ORF1ab/nsp3995Q995ECagGag11AY.430.000004
ORF1ab/nsp3995Q995PcAgcCg11AY.430.000004
ORF1ab/nsp3995Q995RcAgcGg11AY.430.000004
ORF1ab/nsp3995Q995del1caGca-11AY.440.000006
ORF1ab/nsp3995Q995HcaGcaT11AY.46.60.000072
ORF1ab/nsp3995Q995LcAgcTg11AY.46.60.000072
ORF1ab/nsp3995Q995KCagAag11AY.520.000814
ORF1ab/nsp3995Q995HcaGcaT11AY.540.000095
ORF1ab/nsp3995Q995XCagTag11AY.590.00053
ORF1ab/nsp3995Q995QcaGcaA11AY.610.000105
ORF1ab/nsp3995Q995HcaGcaT11AY.650.000533
ORF1ab/nsp3995Q995RcAgcGg11AY.670.000464
ORF1ab/nsp3995Q995HcaGcaT11AY.740.000116
ORF1ab/nsp3995Q995HcaGcaC11AY.750.000056
ORF1ab/nsp3995Q995delCAG---11AY.750.000056
ORF1ab/nsp3995Q995HcaGcaT11AY.80.000606
ORF1ab/nsp3995Q995LcAgcTg11AY.850.000427
ORF1ab/nsp3995Q995HcaGcaT11AY.90.000068
ORF1ab/nsp3995Q995HcaGcaT11AY.9.20.000037
ORF1ab/nsp3995Q995QcaGcaA11AY.980.000079
ORF1ab/nsp3995Q995LcAGcTA11AY.980.000079
ORF1ab/nsp3995Q995LcAgcTg11AY.990.001049
ORF1ab/nsp3995Q995HcaGcaT11AY.99.20.000092
ORF1ab/nsp3995Q995HcaGcaT11B0.000128
ORF1ab/nsp3995Q995RcAgcGg11B0.000128
ORF1ab/nsp3995Q995KCagAag11B0.000128
ORF1ab/nsp3995Q995PcAgcCg11B.10.000009
ORF1ab/nsp3995Q995XCagTag11B.1.10.000018
ORF1ab/nsp3995Q995PcAgcCg11B.1.10.000018
ORF1ab/nsp3995Q995delCAG---11B.1.1.1390.022727
ORF1ab/nsp3995Q995delCAG---11B.1.1.1420.017544
ORF1ab/nsp3995Q995delCAG---11B.1.1.1590.004673
ORF1ab/nsp3995Q995HcaGcaT11B.1.1.2630.001558
ORF1ab/nsp3995Q995HcaGcaT11B.1.1.3060.000438
ORF1ab/nsp3995Q995ECagGag11B.1.1.3060.000438
ORF1ab/nsp3995Q995delCAG---11B.1.1.3150.008475
ORF1ab/nsp3995Q995HcaGcaT11B.1.1.3170.000412
ORF1ab/nsp3995Q995ECagGag11B.1.1.3260.001761
ORF1ab/nsp3995Q995HcaGcaT11B.1.1.4330.001425
ORF1ab/nsp3995Q995HcaGcaT11B.1.1.630.000386
ORF1ab/nsp3995Q995XCagTag11B.1.1.70.000001
ORF1ab/nsp3995Q995HcaGcaT11B.1.1.700.000341
ORF1ab/nsp3995Q995HcaGcaT11B.1.1200.007692
ORF1ab/nsp3995Q995KCagAag11B.1.1570.002985
ORF1ab/nsp3995Q995RcAgcGg11B.1.1770.000013
ORF1ab/nsp3995Q995QcaGcaA11B.1.177.210.000076
ORF1ab/nsp3995Q995XCagTag11B.1.177.40.000211
ORF1ab/nsp3995Q995delCAG---11B.1.177.450.000381
ORF1ab/nsp3995Q995HcaGcaT11B.1.177.570.000281
ORF1ab/nsp3995Q995del1cAgc-g11B.1.177.60.000977
ORF1ab/nsp3995Q995RcAgcGg11B.1.1890.004292
ORF1ab/nsp3995Q995KCagAag11B.1.20.000009
ORF1ab/nsp3995Q995QcaGcaA11B.1.2430.00007
ORF1ab/nsp3995Q995HcaGcaT11B.1.2580.000067
ORF1ab/nsp3995Q995delCAG---11B.1.2580.000067
ORF1ab/nsp3995Q995HcaGcaT11B.1.258.140.00098
ORF1ab/nsp3995Q995HcaGcaT11B.1.258.220.002667
ORF1ab/nsp3995Q995KCagAag11B.1.3010.005917
ORF1ab/nsp3995Q995delCAG---11B.1.3190.003049
ORF1ab/nsp3995Q995HcaGcaT11B.1.3320.003497
ORF1ab/nsp3995Q995QcaGcaA11B.1.3510.00003
ORF1ab/nsp3995Q995RcAgcGg11B.1.3510.00003
ORF1ab/nsp3995Q995HcaGcaT11B.1.360.000146
ORF1ab/nsp3995Q995del1cAgc-g11B.1.36.10.00114
ORF1ab/nsp3995Q995delCAG---11B.1.36.180.00042
ORF1ab/nsp3995Q995RcAgcGg11B.1.36.360.000602
ORF1ab/nsp3995Q995LcAgcTg11B.1.3990.001934
ORF1ab/nsp3995Q995HcaGcaT11B.1.4110.003704
ORF1ab/nsp3995Q995PcAgcCg11B.1.4220.000812
ORF1ab/nsp3995Q995XCagTag11B.1.4270.00005
ORF1ab/nsp3995Q995QcaGcaA11B.1.4290.000024
ORF1ab/nsp3995Q995KCagAag11B.1.4290.000024
ORF1ab/nsp3995Q995XCagTag11B.1.4290.000024
ORF1ab/nsp3995Q995XCagTag11B.1.4320.011236
ORF1ab/nsp3995Q995LcAGcTA11B.1.438.10.000107
ORF1ab/nsp3995Q995LcAGcTA11B.1.5240.001406
ORF1ab/nsp3995Q995HcaGcaT11B.1.5250.000113
ORF1ab/nsp3995Q995LcAGcTA11B.1.5260.000024
ORF1ab/nsp3995Q995HcaGcaT11B.1.5260.000024
ORF1ab/nsp3995Q995HcaGcaT11B.1.575.10.002439
ORF1ab/nsp3995Q995HcaGcaT11B.1.5760.000907
ORF1ab/nsp3995Q995RcAgcGg11B.1.5960.000087
ORF1ab/nsp3995Q995KCagAag11B.1.5960.000087
ORF1ab/nsp3995Q995XCagTag11B.1.617.20.000004
ORF1ab/nsp3995Q995KCagAag11B.1.6230.000536
ORF1ab/nsp3995Q995HcaGcaT11B.1.6280.000352
ORF1ab/nsp3995Q995RcAgcGg11B.1.6280.000352
ORF1ab/nsp3995Q995delCAG---11B.1.6370.000073
ORF1ab/nsp3995Q995HcaGcaT11B.1.840.020833
ORF1ab/nsp3995Q995delCAG---11B.150.017544
ORF1ab/nsp3995Q995QcaGcaA11B.30.000831
ORF1ab/nsp3995Q995delCAG---11B.340.013699
ORF1ab/nsp3995Q995HcaGcaT11B.400.000364
ORF1ab/nsp3995Q995HcaGcaT11B.6.60.000889
ORF1ab/nsp3995Q995HcaGcaT11C.1.20.004255
ORF1ab/nsp3995Q995XCaGTaA11C.350.000774
ORF1ab/nsp3995Q995HcaGcaT11C.36.3.10.002717
ORF1ab/nsp3995Q995LcAGcTA11C.370.000116
ORF1ab/nsp3995Q995delCAG---11C.370.000116
ORF1ab/nsp3995Q995QcaGcaA11C.370.000116
ORF1ab/nsp3995Q995ECagGag11D.20.000075
ORF1ab/nsp3995Q995HcaGcaT11D.30.005917
ORF1ab/nsp3995Q995LcAGcTA11P.1.140.000048
ORF1ab/nsp3995Q995QcaGcaA11P.1.150.000232
ORF1ab/nsp3995Q995HcaGcaT11P.1.70.000319
ORF1ab/nsp3995Q995RcAgcGg11P.30.001595
ORF1ab/nsp3995Q995del1cAgc-g11R.10.00009
ORF1ab/nsp3995Q995LcAGcTA11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.