CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 994 | A994V | A1812V | nonsyn | gCt | gTt | 2021 | 2020 | 0.999505 | 5699-5701 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 2020 | 2021 | All | 0.000386 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 739 | 739 | B.1.177.32 | 0.997301 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 397 | 397 | AY.4 | 0.000618 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 231 | 231 | B.1.1.7 | 0.000207 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 49 | 49 | B.1.617.2 | 0.000185 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 46 | 46 | AY.43 | 0.000204 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 42 | 42 | B.1.177 | 0.000553 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 39 | 39 | AY.42 | 0.001569 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 34 | 34 | AY.103 | 0.000211 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 33 | 33 | AY.29 | 0.000521 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 28 | 28 | B.1 | 0.000256 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 24 | 24 | AY.3 | 0.000239 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 23 | 23 | B.1.621 | 0.002036 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 20 | 20 | AY.44 | 0.000122 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 19 | 19 | B.1.2 | 0.000167 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 15 | 15 | AY.47 | 0.000467 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 14 | 14 | AY.117 | 0.001183 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 14 | 14 | AY.121 | 0.001894 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 13 | 13 | B.1.1 | 0.000236 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 12 | 12 | AY.25 | 0.000072 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 11 | 11 | AY.120 | 0.000409 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 10 | 10 | P.1 | 0.000158 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 8 | 8 | B.1.1.525 | 0.043716 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 7 | 7 | AY.119 | 0.000247 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 6 | 6 | A.2.5 | 0.002994 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 6 | 6 | AY.102 | 0.000159 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 5 | 6 | AY.39 | 0.000124 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 6 | 6 | AY.4.2 | 0.00013 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 6 | 6 | B.1.427 | 0.000303 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 6 | 6 | B.1.429 | 0.000141 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 6 | 6 | B.1.526 | 0.000141 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 6 | 6 | R.1 | 0.00054 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 5 | 5 | B.1.1.241 | 0.010352 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 5 | 5 | B.1.1.519 | 0.000199 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 5 | 5 | B.1.177.56 | 0.003338 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 5 | 5 | B.1.243 | 0.000348 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 4 | 4 | B.1.160 | 0.000125 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 4 | 4 | B.1.36.1 | 0.004561 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 3 | 3 | B | 0.000383 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 3 | 3 | B.1.366 | 0.014634 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 3 | 3 | B.1.631 | 0.010101 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 3 | 3 | P.1.17 | 0.000485 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 2 | 2 | B.1.1.269 | 0.002706 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 2 | 2 | B.1.111 | 0.00235 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 2 | 2 | B.1.470 | 0.002809 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | B.1.1.297 | 0.002237 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | B.1.177.5 | 0.001242 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | B.1.434 | 0.052632 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | N.9 | 0.005952 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 994 | A994V | gCt | gTt | 1 | 1 | V.1 | 0.022727 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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