CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 994

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3994A994DA1812DnonsyngCtgAt5099509915699-5701
ORF1ab/nsp3994A994AA1812AsyngcTgcC209119000.9086565699-5701
ORF1ab/nsp3994A994AA1812AsyngcTgcA20911090.05212825699-5701
ORF1ab/nsp3994A994AA1812AsyngcTgcG2091820.03921575699-5701
ORF1ab/nsp3994A994VA1812VnonsyngCtgTt202120200.9995055699-5701
ORF1ab/nsp3994A994VA1812VnonsyngCTgTC202110.0004948055699-5701
ORF1ab/nsp3994A994SA1812SnonsynGctTct29529515699-5701
ORF1ab/nsp3994A994TA1812TnonsynGctAct1841830.9945655699-5701
ORF1ab/nsp3994A994TA1812TnonsynGcTAcA18410.005434785699-5701
ORF1ab/nsp3994A994delA1812deldelGCT---343415699-5701
ORF1ab/nsp3994A994del1A1812del1delgCtg-t23190.8260875699-5701
ORF1ab/nsp3994A994del1A1812del1delGct-ct2320.08695655699-5701
ORF1ab/nsp3994A994del1A1812del1delGCtA-t2310.04347835699-5701
ORF1ab/nsp3994A994del1A1812del1delgcTgc-2310.04347835699-5701
ORF1ab/nsp3994A994PA1812PnonsynGctCct870.8755699-5701
ORF1ab/nsp3994A994PA1812PnonsynGcTCcC810.1255699-5701
ORF1ab/nsp3994A994del2A1812del2delGCt--t5515699-5701
ORF1ab/nsp3994A994GA1812GnonsyngCtgGt5515699-5701
ORF1ab/nsp3994A994EA1812EnonsyngCTgAG210.55699-5701
ORF1ab/nsp3994A994FA1812FnonsynGCTTTC210.55699-5701
ORF1ab/nsp3994A994EA1812EnonsyngCTgAA210.55699-5701
ORF1ab/nsp3994A994FA1812FnonsynGCtTTt210.55699-5701
ORF1ab/nsp3994A994LA1812LnonsynGCtCTt1115699-5701
ORF1ab/nsp3994A994RA1812RnonsynGCTCGA1115699-5701
ORF1ab/nsp3994A994CA1812CnonsynGCtTGt1115699-5701
ORF1ab/nsp3994A994NA1812NnonsynGCtAAt1115699-5701

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3994A994DgCtgAt50995099All0.000975
ORF1ab/nsp3994A994DgCtgAt22072207B.1.1.3060.967558
ORF1ab/nsp3994A994AgcTgcC19002091All0.000363
ORF1ab/nsp3994A994AgcTgcA1092091All0.000021
ORF1ab/nsp3994A994AgcTgcG822091All0.000016
ORF1ab/nsp3994A994DgCtgAt20412041AE.80.998044
ORF1ab/nsp3994A994VgCtgTt20202021All0.000386
ORF1ab/nsp3994A994VgCTgTC12021All0
ORF1ab/nsp3994A994AgcTgcC15581558B.1.619.10.999359
ORF1ab/nsp3994A994VgCtgTt739739B.1.177.320.997301
ORF1ab/nsp3994A994VgCtgTt397397AY.40.000618
ORF1ab/nsp3994A994SGctTct295295All0.000056
ORF1ab/nsp3994A994VgCtgTt231231B.1.1.70.000207
ORF1ab/nsp3994A994SGctTct192192B.1.1.70.000172
ORF1ab/nsp3994A994AgcTgcC95191B.1.1.70.000085
ORF1ab/nsp3994A994AgcTgcA88191B.1.1.70.000079
ORF1ab/nsp3994A994AgcTgcG8191B.1.1.70.000007
ORF1ab/nsp3994A994TGctAct183184All0.000035
ORF1ab/nsp3994A994TGcTAcA1184All0
ORF1ab/nsp3994A994DgCtgAt158158B.10.001447
ORF1ab/nsp3994A994DgCtgAt134134B.1.1.1920.309469
ORF1ab/nsp3994A994DgCtgAt123123B.1.5380.991935
ORF1ab/nsp3994A994DgCtgAt7979AE.10.897727
ORF1ab/nsp3994A994DgCtgAt5656B.1.10.001016
ORF1ab/nsp3994A994VgCtgTt4949B.1.617.20.000185
ORF1ab/nsp3994A994AgcTgcC4647B.10.000421
ORF1ab/nsp3994A994AgcTgcA147B.10.000009
ORF1ab/nsp3994A994VgCtgTt4646AY.430.000204
ORF1ab/nsp3994A994DgCtgAt4444AE.50.814815
ORF1ab/nsp3994A994AgcTgcC3343AY.40.000051
ORF1ab/nsp3994A994AgcTgcG843AY.40.000012
ORF1ab/nsp3994A994AgcTgcA243AY.40.000003
ORF1ab/nsp3994A994VgCtgTt4242B.1.1770.000553
ORF1ab/nsp3994A994VgCtgTt3939AY.420.001569
ORF1ab/nsp3994A994delGCT---3434All0.000007
ORF1ab/nsp3994A994VgCtgTt3434AY.1030.000211
ORF1ab/nsp3994A994VgCtgTt3333AY.290.000521
ORF1ab/nsp3994A994AgcTgcG2432B.1.617.20.00009
ORF1ab/nsp3994A994AgcTgcC732B.1.617.20.000026
ORF1ab/nsp3994A994AgcTgcA132B.1.617.20.000004
ORF1ab/nsp3994A994DgCtgAt3131AE.31
ORF1ab/nsp3994A994TGctAct3131AY.40.000048
ORF1ab/nsp3994A994SGctTct3030AY.30.000298
ORF1ab/nsp3994A994VgCtgTt2828B.10.000256
ORF1ab/nsp3994A994DgCtgAt2828B.1.5481
ORF1ab/nsp3994A994DgCtgAt2626AE.61
ORF1ab/nsp3994A994VgCtgTt2424AY.30.000239
ORF1ab/nsp3994A994DgCtgAt2323AE.41
ORF1ab/nsp3994A994del1gCtg-t1923All0.000004
ORF1ab/nsp3994A994del1Gct-ct223All0
ORF1ab/nsp3994A994del1gcTgc-123All0
ORF1ab/nsp3994A994del1GCtA-t123All0
ORF1ab/nsp3994A994TGctAct2323AY.1190.000812
ORF1ab/nsp3994A994AgcTgcC2323B.1.6190.020035
ORF1ab/nsp3994A994VgCtgTt2323B.1.6210.002036
ORF1ab/nsp3994A994TGctAct2222B.1.1.70.00002
ORF1ab/nsp3994A994TGctAct2121AY.1180.001316
ORF1ab/nsp3994A994VgCtgTt2020AY.440.000122
ORF1ab/nsp3994A994VgCtgTt1919B.1.20.000167
ORF1ab/nsp3994A994DgCtgAt1717AE.21
ORF1ab/nsp3994A994VgCtgTt1515AY.470.000467
ORF1ab/nsp3994A994DgCtgAt1515B.1.6090.007191
ORF1ab/nsp3994A994VgCtgTt1414AY.1170.001183
ORF1ab/nsp3994A994VgCtgTt1414AY.1210.001894
ORF1ab/nsp3994A994AgcTgcC1314B.1.1770.000171
ORF1ab/nsp3994A994AgcTgcG114B.1.1770.000013
ORF1ab/nsp3994A994AgcTgcC1313AY.250.000078
ORF1ab/nsp3994A994AgcTgcC1313AY.30.000129
ORF1ab/nsp3994A994VgCtgTt1313B.1.10.000236
ORF1ab/nsp3994A994DgCtgAt1212AE.71
ORF1ab/nsp3994A994VgCtgTt1212AY.250.000072
ORF1ab/nsp3994A994TGctAct1212AY.430.000053
ORF1ab/nsp3994A994AgcTgcC1012AY.440.000061
ORF1ab/nsp3994A994AgcTgcG212AY.440.000012
ORF1ab/nsp3994A994DgCtgAt1212B.1.1.3400.545455
ORF1ab/nsp3994A994VgCtgTt1111AY.1200.000409
ORF1ab/nsp3994A994SGctTct1111B.1.617.20.000041
ORF1ab/nsp3994A994SGctTct1010AY.260.000283
ORF1ab/nsp3994A994VgCtgTt1010P.10.000158
ORF1ab/nsp3994A994SGctTct99AY.40.000014
ORF1ab/nsp3994A994AgcTgcC59AY.430.000022
ORF1ab/nsp3994A994AgcTgcA39AY.430.000013
ORF1ab/nsp3994A994AgcTgcG19AY.430.000004
ORF1ab/nsp3994A994DgCtgAt99B.1.6320.060403
ORF1ab/nsp3994A994PGctCct78All0.000001
ORF1ab/nsp3994A994PGcTCcC18All0
ORF1ab/nsp3994A994TGctAct88AY.250.000048
ORF1ab/nsp3994A994VgCtgTt88B.1.1.5250.043716
ORF1ab/nsp3994A994DgCtgAt88B.1.360.001167
ORF1ab/nsp3994A994TGctAct88R.10.00072
ORF1ab/nsp3994A994AgcTgcC67AY.1030.000037
ORF1ab/nsp3994A994AgcTgcA17AY.1030.000006
ORF1ab/nsp3994A994VgCtgTt77AY.1190.000247
ORF1ab/nsp3994A994SGctTct77AY.330.000467
ORF1ab/nsp3994A994AgcTgcC67AY.330.000401
ORF1ab/nsp3994A994AgcTgcG17AY.330.000067
ORF1ab/nsp3994A994delGCT---77B.1.1.70.000006
ORF1ab/nsp3994A994AgcTgcG47B.1.20.000035
ORF1ab/nsp3994A994AgcTgcC37B.1.20.000026
ORF1ab/nsp3994A994AgcTgcC77B.1.5170.002989
ORF1ab/nsp3994A994VgCtgTt66A.2.50.002994
ORF1ab/nsp3994A994VgCtgTt66AY.1020.000159
ORF1ab/nsp3994A994AgcTgcG56AY.1020.000133
ORF1ab/nsp3994A994AgcTgcC16AY.1020.000027
ORF1ab/nsp3994A994VgCtgTt56AY.390.000124
ORF1ab/nsp3994A994VgCTgTC16AY.390.000025
ORF1ab/nsp3994A994VgCtgTt66AY.4.20.00013
ORF1ab/nsp3994A994AgcTgcC66AY.520.004886
ORF1ab/nsp3994A994AgcTgcG66AY.650.003198
ORF1ab/nsp3994A994VgCtgTt66B.1.4270.000303
ORF1ab/nsp3994A994VgCtgTt66B.1.4290.000141
ORF1ab/nsp3994A994VgCtgTt66B.1.5260.000141
ORF1ab/nsp3994A994DgCtgAt66B.1.5960.000523
ORF1ab/nsp3994A994VgCtgTt66R.10.00054
ORF1ab/nsp3994A994GgCtgGt55All0.000001
ORF1ab/nsp3994A994del2GCt--t55All0.000001
ORF1ab/nsp3994A994SGctTct55AY.440.00003
ORF1ab/nsp3994A994DgCtgAt55AY.750.00028
ORF1ab/nsp3994A994DgCtgAt55B0.000639
ORF1ab/nsp3994A994VgCtgTt55B.1.1.2410.010352
ORF1ab/nsp3994A994VgCtgTt55B.1.1.5190.000199
ORF1ab/nsp3994A994VgCtgTt55B.1.177.560.003338
ORF1ab/nsp3994A994VgCtgTt55B.1.2430.000348
ORF1ab/nsp3994A994DgCtgAt55B.1.617.20.000019
ORF1ab/nsp3994A994TGctAct55B.1.617.20.000019
ORF1ab/nsp3994A994VgCtgTt44AY.260.000113
ORF1ab/nsp3994A994DgCtgAt44AY.40.000006
ORF1ab/nsp3994A994TGctAct44AY.420.000161
ORF1ab/nsp3994A994SGctTct44AY.540.000381
ORF1ab/nsp3994A994AgcTgcC44AY.690.000747
ORF1ab/nsp3994A994TGctAct44B.1.10.000073
ORF1ab/nsp3994A994DgCtgAt44B.1.1.2940.005063
ORF1ab/nsp3994A994DgCtgAt44B.1.1.570.045977
ORF1ab/nsp3994A994VgCtgTt44B.1.1600.000125
ORF1ab/nsp3994A994AgcTgcC44B.1.160.260.009685
ORF1ab/nsp3994A994AgcTgcC44B.1.1950.020101
ORF1ab/nsp3994A994VgCtgTt44B.1.36.10.004561
ORF1ab/nsp3994A994TGctAct44B.1.4270.000202
ORF1ab/nsp3994A994AgcTgcA34B.1.4290.000071
ORF1ab/nsp3994A994AgcTgcC14B.1.4290.000024
ORF1ab/nsp3994A994del1gCtg-t34B.1.617.20.000011
ORF1ab/nsp3994A994del1gcTgc-14B.1.617.20.000004
ORF1ab/nsp3994A994AgcTgcG44B.1.6210.000354
ORF1ab/nsp3994A994AgcTgcC44B.1.6230.002146
ORF1ab/nsp3994A994TGctAct33AY.230.000209
ORF1ab/nsp3994A994VgCtgTt33AY.230.000209
ORF1ab/nsp3994A994SGctTct33AY.430.000013
ORF1ab/nsp3994A994SGctTct33AY.980.000237
ORF1ab/nsp3994A994VgCtgTt33AY.99.20.000276
ORF1ab/nsp3994A994VgCtgTt33B0.000383
ORF1ab/nsp3994A994TGctAct33B.10.000027
ORF1ab/nsp3994A994del1gCtg-t33B.10.000027
ORF1ab/nsp3994A994TGctAct33B.1.1.5190.000119
ORF1ab/nsp3994A994DgCtgAt33B.1.1.70.000003
ORF1ab/nsp3994A994AgcTgcC23B.1.2210.000142
ORF1ab/nsp3994A994AgcTgcG13B.1.2210.000071
ORF1ab/nsp3994A994del1gCtg-t33B.1.2470.044776
ORF1ab/nsp3994A994VgCtgTt33B.1.3510.000089
ORF1ab/nsp3994A994VgCtgTt33B.1.3660.014634
ORF1ab/nsp3994A994DgCtgAt33B.1.617.10.000387
ORF1ab/nsp3994A994VgCtgTt33B.1.6310.010101
ORF1ab/nsp3994A994AgcTgcC23P.10.000032
ORF1ab/nsp3994A994AgcTgcG13P.10.000016
ORF1ab/nsp3994A994VgCtgTt33P.1.170.000485
ORF1ab/nsp3994A994FGCtTTt12All0
ORF1ab/nsp3994A994EgCTgAG12All0
ORF1ab/nsp3994A994FGCTTTC12All0
ORF1ab/nsp3994A994EgCTgAA12All0
ORF1ab/nsp3994A994DgCtgAt22AY.1020.000053
ORF1ab/nsp3994A994TGctAct22AY.1020.000053
ORF1ab/nsp3994A994DgCtgAt22AY.1030.000012
ORF1ab/nsp3994A994AgcTgcC22AY.1170.000169
ORF1ab/nsp3994A994VgCtgTt22AY.160.000759
ORF1ab/nsp3994A994TGctAct22AY.200.000078
ORF1ab/nsp3994A994delGCT---22AY.250.000012
ORF1ab/nsp3994A994AgcTgcC22AY.260.000057
ORF1ab/nsp3994A994AgcTgcC12AY.270.000065
ORF1ab/nsp3994A994AgcTgcA12AY.270.000065
ORF1ab/nsp3994A994VgCtgTt22AY.330.000134
ORF1ab/nsp3994A994AgcTgcC22AY.39.10.000079
ORF1ab/nsp3994A994TGctAct22AY.440.000012
ORF1ab/nsp3994A994TGctAct22AY.450.000243
ORF1ab/nsp3994A994AgcTgcG12AY.460.000104
ORF1ab/nsp3994A994AgcTgcA12AY.460.000104
ORF1ab/nsp3994A994VgCtgTt22AY.610.00021
ORF1ab/nsp3994A994AgcTgcG12AY.610.000105
ORF1ab/nsp3994A994AgcTgcA12AY.610.000105
ORF1ab/nsp3994A994VgCtgTt22AY.700.000417
ORF1ab/nsp3994A994VgCtgTt22AY.98.10.000097
ORF1ab/nsp3994A994TGctAct22AY.98.10.000097
ORF1ab/nsp3994A994PGcTCcC12B0.000128
ORF1ab/nsp3994A994PGctCct12B0.000128
ORF1ab/nsp3994A994SGctTct22B.1.10.000036
ORF1ab/nsp3994A994AgcTgcA12B.1.10.000018
ORF1ab/nsp3994A994AgcTgcC12B.1.10.000018
ORF1ab/nsp3994A994TGctAct22B.1.1.1710.007353
ORF1ab/nsp3994A994VgCtgTt22B.1.1.2140.000111
ORF1ab/nsp3994A994VgCtgTt22B.1.1.2690.002706
ORF1ab/nsp3994A994VgCtgTt22B.1.1.3110.000716
ORF1ab/nsp3994A994VgCtgTt22B.1.1.3180.000604
ORF1ab/nsp3994A994PGctCct22B.1.1.70.000002
ORF1ab/nsp3994A994VgCtgTt22B.1.1110.00235
ORF1ab/nsp3994A994AgcTgcC22B.1.177.810.000379
ORF1ab/nsp3994A994DgCtgAt22B.1.20.000018
ORF1ab/nsp3994A994SGctTct22B.1.20.000018
ORF1ab/nsp3994A994VgCtgTt22B.1.2340.000264
ORF1ab/nsp3994A994DgCtgAt22B.1.2410.001623
ORF1ab/nsp3994A994TGctAct22B.1.2430.000139
ORF1ab/nsp3994A994AgcTgcC22B.1.2580.000133
ORF1ab/nsp3994A994VgCtgTt22B.1.258.170.000208
ORF1ab/nsp3994A994AgcTgcC22B.1.258.170.000208
ORF1ab/nsp3994A994del1gCtg-t22B.1.360.000292
ORF1ab/nsp3994A994delGCT---22B.1.360.000292
ORF1ab/nsp3994A994AgcTgcA22B.1.466.20.000782
ORF1ab/nsp3994A994VgCtgTt22B.1.4700.002809
ORF1ab/nsp3994A994delGCT---22B.1.617.20.000008
ORF1ab/nsp3994A994delGCT---22B.1.6370.000146
ORF1ab/nsp3994A994VgCtgTt22B.1.6370.000146
ORF1ab/nsp3994A994DgCtgAt22P.10.000032
ORF1ab/nsp3994A994AgcTgcC22Q.80.00033
ORF1ab/nsp3994A994SGctTct110.055556
ORF1ab/nsp3994A994VgCtgTt110.055556
ORF1ab/nsp3994A994CGCtTGt110.055556
ORF1ab/nsp3994A994GgCtgGt110.055556
ORF1ab/nsp3994A994FGCtTTt110.055556
ORF1ab/nsp3994A994AgcTgcA11A0.000387
ORF1ab/nsp3994A994TGctAct11A.190.009434
ORF1ab/nsp3994A994VgCtgTt11A.20.000662
ORF1ab/nsp3994A994delGCT---11A.2.20.001689
ORF1ab/nsp3994A994GgCtgGt11AE.80.000489
ORF1ab/nsp3994A994CGCtTGt11All0
ORF1ab/nsp3994A994RGCTCGA11All0
ORF1ab/nsp3994A994NGCtAAt11All0
ORF1ab/nsp3994A994LGCtCTt11All0
ORF1ab/nsp3994A994DgCtgAt11AT.10.005128
ORF1ab/nsp3994A994DgCtgAt11AY.1000.000046
ORF1ab/nsp3994A994SGctTct11AY.1000.000046
ORF1ab/nsp3994A994delGCT---11AY.1020.000027
ORF1ab/nsp3994A994TGctAct11AY.1030.000006
ORF1ab/nsp3994A994del1gCtg-t11AY.1030.000006
ORF1ab/nsp3994A994AgcTgcG11AY.1080.001103
ORF1ab/nsp3994A994TGctAct11AY.1130.000142
ORF1ab/nsp3994A994VgCtgTt11AY.1180.000063
ORF1ab/nsp3994A994AgcTgcC11AY.1180.000063
ORF1ab/nsp3994A994AgcTgcA11AY.1190.000035
ORF1ab/nsp3994A994DgCtgAt11AY.1200.000037
ORF1ab/nsp3994A994delGCT---11AY.1200.000037
ORF1ab/nsp3994A994SGctTct11AY.1200.000037
ORF1ab/nsp3994A994AgcTgcG11AY.1200.000037
ORF1ab/nsp3994A994DgCtgAt11AY.1210.000135
ORF1ab/nsp3994A994VgCtgTt11AY.130.000161
ORF1ab/nsp3994A994del1gCtg-t11AY.160.00038
ORF1ab/nsp3994A994VgCtgTt11AY.16.10.00047
ORF1ab/nsp3994A994AgcTgcG11AY.16.10.00047
ORF1ab/nsp3994A994VgCtgTt11AY.20.000356
ORF1ab/nsp3994A994AgcTgcG11AY.200.000039
ORF1ab/nsp3994A994VgCtgTt11AY.200.000039
ORF1ab/nsp3994A994DgCtgAt11AY.230.00007
ORF1ab/nsp3994A994AgcTgcC11AY.230.00007
ORF1ab/nsp3994A994DgCtgAt11AY.250.000006
ORF1ab/nsp3994A994del1Gct-ct11AY.250.000006
ORF1ab/nsp3994A994SGctTct11AY.250.000006
ORF1ab/nsp3994A994del2GCt--t11AY.250.000006
ORF1ab/nsp3994A994TGctAct11AY.260.000028
ORF1ab/nsp3994A994delGCT---11AY.260.000028
ORF1ab/nsp3994A994TGctAct11AY.30.00001
ORF1ab/nsp3994A994VgCtgTt11AY.3.10.000085
ORF1ab/nsp3994A994VgCtgTt11AY.320.000532
ORF1ab/nsp3994A994TGctAct11AY.340.000097
ORF1ab/nsp3994A994AgcTgcG11AY.34.10.00051
ORF1ab/nsp3994A994AgcTgcG11AY.350.000233
ORF1ab/nsp3994A994AgcTgcC11AY.390.000025
ORF1ab/nsp3994A994GgCtgGt11AY.390.000025
ORF1ab/nsp3994A994TGctAct11AY.390.000025
ORF1ab/nsp3994A994SGctTct11AY.390.000025
ORF1ab/nsp3994A994PGctCct11AY.390.000025
ORF1ab/nsp3994A994DgCtgAt11AY.390.000025
ORF1ab/nsp3994A994PGctCct11AY.40.000002
ORF1ab/nsp3994A994VgCtgTt11AY.4.2.10.000149
ORF1ab/nsp3994A994AgcTgcC11AY.420.00004
ORF1ab/nsp3994A994delGCT---11AY.430.000004
ORF1ab/nsp3994A994del1gCtg-t11AY.440.000006
ORF1ab/nsp3994A994AgcTgcG11AY.450.000122
ORF1ab/nsp3994A994VgCtgTt11AY.46.10.001027
ORF1ab/nsp3994A994VgCtgTt11AY.46.60.000072
ORF1ab/nsp3994A994VgCtgTt11AY.480.000465
ORF1ab/nsp3994A994VgCtgTt11AY.50.000021
ORF1ab/nsp3994A994AgcTgcG11AY.5.30.000337
ORF1ab/nsp3994A994AgcTgcC11AY.5.40.000277
ORF1ab/nsp3994A994VgCtgTt11AY.520.000814
ORF1ab/nsp3994A994DgCtgAt11AY.520.000814
ORF1ab/nsp3994A994VgCtgTt11AY.540.000095
ORF1ab/nsp3994A994VgCtgTt11AY.550.000917
ORF1ab/nsp3994A994AgcTgcC11AY.590.00053
ORF1ab/nsp3994A994VgCtgTt11AY.590.00053
ORF1ab/nsp3994A994SGctTct11AY.610.000105
ORF1ab/nsp3994A994VgCtgTt11AY.620.000436
ORF1ab/nsp3994A994DgCtgAt11AY.650.000533
ORF1ab/nsp3994A994delGCT---11AY.670.000464
ORF1ab/nsp3994A994DgCtgAt11AY.680.000274
ORF1ab/nsp3994A994VgCtgTt11AY.680.000274
ORF1ab/nsp3994A994TGcTAcA11AY.690.000187
ORF1ab/nsp3994A994AgcTgcG11AY.70.000196
ORF1ab/nsp3994A994SGctTct11AY.7.10.000113
ORF1ab/nsp3994A994VgCtgTt11AY.7.10.000113
ORF1ab/nsp3994A994VgCtgTt11AY.710.000475
ORF1ab/nsp3994A994delGCT---11AY.750.000056
ORF1ab/nsp3994A994VgCtgTt11AY.750.000056
ORF1ab/nsp3994A994VgCtgTt11AY.75.10.00018
ORF1ab/nsp3994A994RGCTCGA11AY.75.10.00018
ORF1ab/nsp3994A994AgcTgcC11AY.780.001541
ORF1ab/nsp3994A994AgcTgcC11AY.850.000427
ORF1ab/nsp3994A994VgCtgTt11AY.90.000068
ORF1ab/nsp3994A994SGctTct11AY.90.000068
ORF1ab/nsp3994A994SGctTct11AY.9.10.000084
ORF1ab/nsp3994A994del2GCt--t11AY.9.20.000037
ORF1ab/nsp3994A994VgCtgTt11AY.9.20.000037
ORF1ab/nsp3994A994VgCtgTt11AY.910.00073
ORF1ab/nsp3994A994VgCtgTt11AY.930.000273
ORF1ab/nsp3994A994AgcTgcC11AY.970.001701
ORF1ab/nsp3994A994AgcTgcC11AY.980.000079
ORF1ab/nsp3994A994VgCtgTt11AY.990.001049
ORF1ab/nsp3994A994AgcTgcC11B0.000128
ORF1ab/nsp3994A994EgCTgAG11B.10.000009
ORF1ab/nsp3994A994PGctCct11B.10.000009
ORF1ab/nsp3994A994del1gCtg-t11B.1.10.000018
ORF1ab/nsp3994A994TGctAct11B.1.1.10.000327
ORF1ab/nsp3994A994VgCtgTt11B.1.1.100.001115
ORF1ab/nsp3994A994del1gCtg-t11B.1.1.1210.002427
ORF1ab/nsp3994A994delGCT---11B.1.1.1390.022727
ORF1ab/nsp3994A994delGCT---11B.1.1.1420.017544
ORF1ab/nsp3994A994AgcTgcC11B.1.1.1530.001095
ORF1ab/nsp3994A994VgCtgTt11B.1.1.1570.000913
ORF1ab/nsp3994A994delGCT---11B.1.1.1590.004673
ORF1ab/nsp3994A994VgCtgTt11B.1.1.1590.004673
ORF1ab/nsp3994A994AgcTgcG11B.1.1.2220.000204
ORF1ab/nsp3994A994VgCtgTt11B.1.1.2770.000759
ORF1ab/nsp3994A994VgCtgTt11B.1.1.280.000311
ORF1ab/nsp3994A994VgCtgTt11B.1.1.2970.002237
ORF1ab/nsp3994A994DgCtgAt11B.1.1.3030.002762
ORF1ab/nsp3994A994NGCtAAt11B.1.1.3060.000438
ORF1ab/nsp3994A994delGCT---11B.1.1.3150.008475
ORF1ab/nsp3994A994SGctTct11B.1.1.3290.003846
ORF1ab/nsp3994A994AgcTgcG11B.1.1.3340.016393
ORF1ab/nsp3994A994DgCtgAt11B.1.1.370.000193
ORF1ab/nsp3994A994TGctAct11B.1.1.3890.006061
ORF1ab/nsp3994A994VgCtgTt11B.1.1.4320.001266
ORF1ab/nsp3994A994VgCtgTt11B.1.1.4340.000349
ORF1ab/nsp3994A994del1gCtg-t11B.1.1.4480.002033
ORF1ab/nsp3994A994TGctAct11B.1.1.460.004367
ORF1ab/nsp3994A994AgcTgcC11B.1.1.4640.001473
ORF1ab/nsp3994A994DgCtgAt11B.1.1.5260.003546
ORF1ab/nsp3994A994AgcTgcG11B.1.1.5260.003546
ORF1ab/nsp3994A994TGctAct11B.1.1.630.000386
ORF1ab/nsp3994A994EgCTgAA11B.1.1.70.000001
ORF1ab/nsp3994A994GgCtgGt11B.1.1.70.000001
ORF1ab/nsp3994A994del2GCt--t11B.1.1.70.000001
ORF1ab/nsp3994A994VgCtgTt11B.1.110.30.000718
ORF1ab/nsp3994A994TGctAct11B.1.1280.000635
ORF1ab/nsp3994A994DgCtgAt11B.1.1280.000635
ORF1ab/nsp3994A994AgcTgcC11B.1.1600.000031
ORF1ab/nsp3994A994DgCtgAt11B.1.160.160.000929
ORF1ab/nsp3994A994TGctAct11B.1.1770.000013
ORF1ab/nsp3994A994SGctTct11B.1.1770.000013
ORF1ab/nsp3994A994VgCtgTt11B.1.177.210.000076
ORF1ab/nsp3994A994delGCT---11B.1.177.450.000381
ORF1ab/nsp3994A994VgCtgTt11B.1.177.50.001242
ORF1ab/nsp3994A994VgCtgTt11B.1.177.600.000218
ORF1ab/nsp3994A994VgCtgTt11B.1.177.70.000165
ORF1ab/nsp3994A994DgCtgAt11B.1.177.830.001481
ORF1ab/nsp3994A994TGctAct11B.1.20.000009
ORF1ab/nsp3994A994GgCtgGt11B.1.20.000009
ORF1ab/nsp3994A994DgCtgAt11B.1.2140.003663
ORF1ab/nsp3994A994del1gCtg-t11B.1.2210.000071
ORF1ab/nsp3994A994VgCtgTt11B.1.2210.000071
ORF1ab/nsp3994A994VgCtgTt11B.1.2400.000216
ORF1ab/nsp3994A994SGctTct11B.1.2430.00007
ORF1ab/nsp3994A994PGctCct11B.1.2580.000067
ORF1ab/nsp3994A994delGCT---11B.1.2580.000067
ORF1ab/nsp3994A994DgCtgAt11B.1.2600.003344
ORF1ab/nsp3994A994DgCtgAt11B.1.2790.000514
ORF1ab/nsp3994A994delGCT---11B.1.3190.003049
ORF1ab/nsp3994A994AgcTgcG11B.1.3200.001245
ORF1ab/nsp3994A994DgCtgAt11B.1.3200.001245
ORF1ab/nsp3994A994SGctTct11B.1.3500.002933
ORF1ab/nsp3994A994AgcTgcG11B.1.3510.00003
ORF1ab/nsp3994A994SGctTct11B.1.3510.00003
ORF1ab/nsp3994A994TGctAct11B.1.351.20.000303
ORF1ab/nsp3994A994VgCtgTt11B.1.351.20.000303
ORF1ab/nsp3994A994SGctTct11B.1.360.000146
ORF1ab/nsp3994A994DgCtgAt11B.1.36.100.004785
ORF1ab/nsp3994A994DgCtgAt11B.1.36.170.000494
ORF1ab/nsp3994A994delGCT---11B.1.36.180.00042
ORF1ab/nsp3994A994VgCtgTt11B.1.36.290.000517
ORF1ab/nsp3994A994DgCtgAt11B.1.36.80.001
ORF1ab/nsp3994A994VgCtgTt11B.1.3620.001541
ORF1ab/nsp3994A994DgCtgAt11B.1.3670.000792
ORF1ab/nsp3994A994VgCtgTt11B.1.3690.000285
ORF1ab/nsp3994A994VgCtgTt11B.1.4340.052632
ORF1ab/nsp3994A994DgCtgAt11B.1.4620.007246
ORF1ab/nsp3994A994DgCtgAt11B.1.5030.002488
ORF1ab/nsp3994A994VgCtgTt11B.1.5250.000113
ORF1ab/nsp3994A994SGctTct11B.1.5260.000024
ORF1ab/nsp3994A994DgCtgAt11B.1.5260.000024
ORF1ab/nsp3994A994del1GCtA-t11B.1.5380.008065
ORF1ab/nsp3994A994VgCtgTt11B.1.5610.000397
ORF1ab/nsp3994A994VgCtgTt11B.1.5770.000687
ORF1ab/nsp3994A994del1Gct-ct11B.1.5820.000491
ORF1ab/nsp3994A994VgCtgTt11B.1.5820.000491
ORF1ab/nsp3994A994AgcTgcC11B.1.5960.000087
ORF1ab/nsp3994A994del1gCtg-t11B.1.617.10.000129
ORF1ab/nsp3994A994AgcTgcC11B.1.617.10.000129
ORF1ab/nsp3994A994del2GCt--t11B.1.617.20.000004
ORF1ab/nsp3994A994LGCtCTt11B.1.617.20.000004
ORF1ab/nsp3994A994TGctAct11B.1.6210.000089
ORF1ab/nsp3994A994VgCtgTt11B.1.6280.000352
ORF1ab/nsp3994A994TGctAct11B.1.6320.006711
ORF1ab/nsp3994A994del2GCt--t11B.1.6370.000073
ORF1ab/nsp3994A994delGCT---11B.150.017544
ORF1ab/nsp3994A994delGCT---11B.340.013699
ORF1ab/nsp3994A994VgCtgTt11B.40.002208
ORF1ab/nsp3994A994VgCtgTt11B.400.000364
ORF1ab/nsp3994A994VgCtgTt11C.350.000774
ORF1ab/nsp3994A994AgcTgcA11C.350.000774
ORF1ab/nsp3994A994FGCTTTC11C.350.000774
ORF1ab/nsp3994A994AgcTgcC11C.370.000116
ORF1ab/nsp3994A994VgCtgTt11C.370.000116
ORF1ab/nsp3994A994delGCT---11C.370.000116
ORF1ab/nsp3994A994SGctTct11D.20.000075
ORF1ab/nsp3994A994VgCtgTt11D.20.000075
ORF1ab/nsp3994A994AgcTgcA11L.30.003546
ORF1ab/nsp3994A994VgCtgTt11N.90.005952
ORF1ab/nsp3994A994TGctAct11P.20.000187
ORF1ab/nsp3994A994VgCtgTt11P.20.000187
ORF1ab/nsp3994A994AgcTgcC11Q.10.000126
ORF1ab/nsp3994A994delGCT---11Q.20.000613
ORF1ab/nsp3994A994VgCtgTt11Q.30.000145
ORF1ab/nsp3994A994VgCtgTt11Q.80.000165
ORF1ab/nsp3994A994VgCtgTt11V.10.022727

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.