CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 994

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3994A994DA1812DnonsyngCtgAt5099509915699-5701
ORF1ab/nsp3994A994AA1812AsyngcTgcC209119000.9086565699-5701
ORF1ab/nsp3994A994AA1812AsyngcTgcA20911090.05212825699-5701
ORF1ab/nsp3994A994AA1812AsyngcTgcG2091820.03921575699-5701
ORF1ab/nsp3994A994VA1812VnonsyngCtgTt202120200.9995055699-5701
ORF1ab/nsp3994A994VA1812VnonsyngCTgTC202110.0004948055699-5701
ORF1ab/nsp3994A994SA1812SnonsynGctTct29529515699-5701
ORF1ab/nsp3994A994TA1812TnonsynGctAct1841830.9945655699-5701
ORF1ab/nsp3994A994TA1812TnonsynGcTAcA18410.005434785699-5701
ORF1ab/nsp3994A994delA1812deldelGCT---343415699-5701
ORF1ab/nsp3994A994del1A1812del1delgCtg-t23190.8260875699-5701
ORF1ab/nsp3994A994del1A1812del1delGct-ct2320.08695655699-5701
ORF1ab/nsp3994A994del1A1812del1delGCtA-t2310.04347835699-5701
ORF1ab/nsp3994A994del1A1812del1delgcTgc-2310.04347835699-5701
ORF1ab/nsp3994A994PA1812PnonsynGctCct870.8755699-5701
ORF1ab/nsp3994A994PA1812PnonsynGcTCcC810.1255699-5701
ORF1ab/nsp3994A994del2A1812del2delGCt--t5515699-5701
ORF1ab/nsp3994A994GA1812GnonsyngCtgGt5515699-5701
ORF1ab/nsp3994A994EA1812EnonsyngCTgAG210.55699-5701
ORF1ab/nsp3994A994FA1812FnonsynGCTTTC210.55699-5701
ORF1ab/nsp3994A994EA1812EnonsyngCTgAA210.55699-5701
ORF1ab/nsp3994A994FA1812FnonsynGCtTTt210.55699-5701
ORF1ab/nsp3994A994LA1812LnonsynGCtCTt1115699-5701
ORF1ab/nsp3994A994RA1812RnonsynGCTCGA1115699-5701
ORF1ab/nsp3994A994CA1812CnonsynGCtTGt1115699-5701
ORF1ab/nsp3994A994NA1812NnonsynGCtAAt1115699-5701

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3994A994DgCtgAt50995099All0.000975
ORF1ab/nsp3994A994DgCtgAt22072207B.1.1.3060.967558
ORF1ab/nsp3994A994AgcTgcC19002091All0.000363
ORF1ab/nsp3994A994AgcTgcA1092091All0.000021
ORF1ab/nsp3994A994AgcTgcG822091All0.000016
ORF1ab/nsp3994A994DgCtgAt20412041AE.80.998044
ORF1ab/nsp3994A994VgCtgTt20202021All0.000386
ORF1ab/nsp3994A994VgCTgTC12021All0
ORF1ab/nsp3994A994AgcTgcC15581558B.1.619.10.999359
ORF1ab/nsp3994A994VgCtgTt739739B.1.177.320.997301
ORF1ab/nsp3994A994VgCtgTt397397AY.40.000618
ORF1ab/nsp3994A994SGctTct295295All0.000056
ORF1ab/nsp3994A994VgCtgTt231231B.1.1.70.000207
ORF1ab/nsp3994A994SGctTct192192B.1.1.70.000172
ORF1ab/nsp3994A994AgcTgcC95191B.1.1.70.000085
ORF1ab/nsp3994A994AgcTgcA88191B.1.1.70.000079
ORF1ab/nsp3994A994AgcTgcG8191B.1.1.70.000007
ORF1ab/nsp3994A994TGctAct183184All0.000035
ORF1ab/nsp3994A994TGcTAcA1184All0
ORF1ab/nsp3994A994DgCtgAt158158B.10.001447
ORF1ab/nsp3994A994DgCtgAt134134B.1.1.1920.309469
ORF1ab/nsp3994A994DgCtgAt123123B.1.5380.991935
ORF1ab/nsp3994A994DgCtgAt7979AE.10.897727
ORF1ab/nsp3994A994DgCtgAt5656B.1.10.001016
ORF1ab/nsp3994A994VgCtgTt4949B.1.617.20.000185
ORF1ab/nsp3994A994AgcTgcC4647B.10.000421
ORF1ab/nsp3994A994AgcTgcA147B.10.000009
ORF1ab/nsp3994A994VgCtgTt4646AY.430.000204
ORF1ab/nsp3994A994DgCtgAt4444AE.50.814815
ORF1ab/nsp3994A994AgcTgcC3343AY.40.000051
ORF1ab/nsp3994A994AgcTgcG843AY.40.000012
ORF1ab/nsp3994A994AgcTgcA243AY.40.000003
ORF1ab/nsp3994A994VgCtgTt4242B.1.1770.000553
ORF1ab/nsp3994A994VgCtgTt3939AY.420.001569
ORF1ab/nsp3994A994delGCT---3434All0.000007
ORF1ab/nsp3994A994VgCtgTt3434AY.1030.000211
ORF1ab/nsp3994A994VgCtgTt3333AY.290.000521
ORF1ab/nsp3994A994AgcTgcG2432B.1.617.20.00009
ORF1ab/nsp3994A994AgcTgcC732B.1.617.20.000026
ORF1ab/nsp3994A994AgcTgcA132B.1.617.20.000004
ORF1ab/nsp3994A994DgCtgAt3131AE.31
ORF1ab/nsp3994A994TGctAct3131AY.40.000048
ORF1ab/nsp3994A994SGctTct3030AY.30.000298
ORF1ab/nsp3994A994VgCtgTt2828B.10.000256
ORF1ab/nsp3994A994DgCtgAt2828B.1.5481
ORF1ab/nsp3994A994DgCtgAt2626AE.61
ORF1ab/nsp3994A994VgCtgTt2424AY.30.000239
ORF1ab/nsp3994A994DgCtgAt2323AE.41
ORF1ab/nsp3994A994del1gCtg-t1923All0.000004
ORF1ab/nsp3994A994del1Gct-ct223All0
ORF1ab/nsp3994A994del1gcTgc-123All0
ORF1ab/nsp3994A994del1GCtA-t123All0
ORF1ab/nsp3994A994TGctAct2323AY.1190.000812
ORF1ab/nsp3994A994AgcTgcC2323B.1.6190.020035
ORF1ab/nsp3994A994VgCtgTt2323B.1.6210.002036
ORF1ab/nsp3994A994TGctAct2222B.1.1.70.00002
ORF1ab/nsp3994A994TGctAct2121AY.1180.001316
ORF1ab/nsp3994A994VgCtgTt2020AY.440.000122
ORF1ab/nsp3994A994VgCtgTt1919B.1.20.000167
ORF1ab/nsp3994A994DgCtgAt1717AE.21
ORF1ab/nsp3994A994VgCtgTt1515AY.470.000467
ORF1ab/nsp3994A994DgCtgAt1515B.1.6090.007191
ORF1ab/nsp3994A994VgCtgTt1414AY.1170.001183
ORF1ab/nsp3994A994VgCtgTt1414AY.1210.001894
ORF1ab/nsp3994A994AgcTgcC1314B.1.1770.000171
ORF1ab/nsp3994A994AgcTgcG114B.1.1770.000013
ORF1ab/nsp3994A994AgcTgcC1313AY.250.000078
ORF1ab/nsp3994A994AgcTgcC1313AY.30.000129
ORF1ab/nsp3994A994VgCtgTt1313B.1.10.000236
ORF1ab/nsp3994A994DgCtgAt1212AE.71
ORF1ab/nsp3994A994VgCtgTt1212AY.250.000072
ORF1ab/nsp3994A994TGctAct1212AY.430.000053
ORF1ab/nsp3994A994AgcTgcC1012AY.440.000061
ORF1ab/nsp3994A994AgcTgcG212AY.440.000012
ORF1ab/nsp3994A994DgCtgAt1212B.1.1.3400.545455
ORF1ab/nsp3994A994VgCtgTt1111AY.1200.000409
ORF1ab/nsp3994A994SGctTct1111B.1.617.20.000041
ORF1ab/nsp3994A994SGctTct1010AY.260.000283
ORF1ab/nsp3994A994VgCtgTt1010P.10.000158
ORF1ab/nsp3994A994SGctTct99AY.40.000014
ORF1ab/nsp3994A994AgcTgcC59AY.430.000022
ORF1ab/nsp3994A994AgcTgcA39AY.430.000013
ORF1ab/nsp3994A994AgcTgcG19AY.430.000004
ORF1ab/nsp3994A994DgCtgAt99B.1.6320.060403
ORF1ab/nsp3994A994PGctCct78All0.000001
ORF1ab/nsp3994A994PGcTCcC18All0
ORF1ab/nsp3994A994TGctAct88AY.250.000048
ORF1ab/nsp3994A994VgCtgTt88B.1.1.5250.043716
ORF1ab/nsp3994A994DgCtgAt88B.1.360.001167
ORF1ab/nsp3994A994TGctAct88R.10.00072
ORF1ab/nsp3994A994AgcTgcC67AY.1030.000037
ORF1ab/nsp3994A994AgcTgcA17AY.1030.000006
ORF1ab/nsp3994A994VgCtgTt77AY.1190.000247
ORF1ab/nsp3994A994SGctTct77AY.330.000467
ORF1ab/nsp3994A994AgcTgcC67AY.330.000401
ORF1ab/nsp3994A994AgcTgcG17AY.330.000067
ORF1ab/nsp3994A994delGCT---77B.1.1.70.000006
ORF1ab/nsp3994A994AgcTgcG47B.1.20.000035
ORF1ab/nsp3994A994AgcTgcC37B.1.20.000026
ORF1ab/nsp3994A994AgcTgcC77B.1.5170.002989
ORF1ab/nsp3994A994VgCtgTt66A.2.50.002994
ORF1ab/nsp3994A994VgCtgTt66AY.1020.000159
ORF1ab/nsp3994A994AgcTgcG56AY.1020.000133
ORF1ab/nsp3994A994AgcTgcC16AY.1020.000027
ORF1ab/nsp3994A994VgCtgTt56AY.390.000124
ORF1ab/nsp3994A994VgCTgTC16AY.390.000025
ORF1ab/nsp3994A994VgCtgTt66AY.4.20.00013
ORF1ab/nsp3994A994AgcTgcC66AY.520.004886
ORF1ab/nsp3994A994AgcTgcG66AY.650.003198
ORF1ab/nsp3994A994VgCtgTt66B.1.4270.000303
ORF1ab/nsp3994A994VgCtgTt66B.1.4290.000141
ORF1ab/nsp3994A994VgCtgTt66B.1.5260.000141
ORF1ab/nsp3994A994DgCtgAt66B.1.5960.000523
ORF1ab/nsp3994A994VgCtgTt66R.10.00054
ORF1ab/nsp3994A994GgCtgGt55All0.000001
ORF1ab/nsp3994A994del2GCt--t55All0.000001
ORF1ab/nsp3994A994SGctTct55AY.440.00003
ORF1ab/nsp3994A994DgCtgAt55AY.750.00028
ORF1ab/nsp3994A994DgCtgAt55B0.000639
ORF1ab/nsp3994A994VgCtgTt55B.1.1.2410.010352
ORF1ab/nsp3994A994VgCtgTt55B.1.1.5190.000199
ORF1ab/nsp3994A994VgCtgTt55B.1.177.560.003338
ORF1ab/nsp3994A994VgCtgTt55B.1.2430.000348
ORF1ab/nsp3994A994DgCtgAt55B.1.617.20.000019
ORF1ab/nsp3994A994TGctAct55B.1.617.20.000019
ORF1ab/nsp3994A994VgCtgTt44AY.260.000113
ORF1ab/nsp3994A994DgCtgAt44AY.40.000006
ORF1ab/nsp3994A994TGctAct44AY.420.000161
ORF1ab/nsp3994A994SGctTct44AY.540.000381
ORF1ab/nsp3994A994AgcTgcC44AY.690.000747
ORF1ab/nsp3994A994TGctAct44B.1.10.000073
ORF1ab/nsp3994A994DgCtgAt44B.1.1.2940.005063
ORF1ab/nsp3994A994DgCtgAt44B.1.1.570.045977
ORF1ab/nsp3994A994VgCtgTt44B.1.1600.000125
ORF1ab/nsp3994A994AgcTgcC44B.1.160.260.009685
ORF1ab/nsp3994A994AgcTgcC44B.1.1950.020101
ORF1ab/nsp3994A994VgCtgTt44B.1.36.10.004561
ORF1ab/nsp3994A994TGctAct44B.1.4270.000202
ORF1ab/nsp3994A994AgcTgcA34B.1.4290.000071
ORF1ab/nsp3994A994AgcTgcC14B.1.4290.000024
ORF1ab/nsp3994A994del1gCtg-t34B.1.617.20.000011
ORF1ab/nsp3994A994del1gcTgc-14B.1.617.20.000004
ORF1ab/nsp3994A994AgcTgcG44B.1.6210.000354
ORF1ab/nsp3994A994AgcTgcC44B.1.6230.002146
ORF1ab/nsp3994A994TGctAct33AY.230.000209
ORF1ab/nsp3994A994VgCtgTt33AY.230.000209
ORF1ab/nsp3994A994SGctTct33AY.430.000013
ORF1ab/nsp3994A994SGctTct33AY.980.000237
ORF1ab/nsp3994A994VgCtgTt33AY.99.20.000276
ORF1ab/nsp3994A994VgCtgTt33B0.000383
ORF1ab/nsp3994A994TGctAct33B.10.000027
ORF1ab/nsp3994A994del1gCtg-t33B.10.000027
ORF1ab/nsp3994A994TGctAct33B.1.1.5190.000119
ORF1ab/nsp3994A994DgCtgAt33B.1.1.70.000003
ORF1ab/nsp3994A994AgcTgcC23B.1.2210.000142
ORF1ab/nsp3994A994AgcTgcG13B.1.2210.000071
ORF1ab/nsp3994A994del1gCtg-t33B.1.2470.044776
ORF1ab/nsp3994A994VgCtgTt33B.1.3510.000089
ORF1ab/nsp3994A994VgCtgTt33B.1.3660.014634
ORF1ab/nsp3994A994DgCtgAt33B.1.617.10.000387
ORF1ab/nsp3994A994VgCtgTt33B.1.6310.010101
ORF1ab/nsp3994A994AgcTgcC23P.10.000032
ORF1ab/nsp3994A994AgcTgcG13P.10.000016
ORF1ab/nsp3994A994VgCtgTt33P.1.170.000485
ORF1ab/nsp3994A994FGCtTTt12All0
ORF1ab/nsp3994A994EgCTgAG12All0
ORF1ab/nsp3994A994FGCTTTC12All0
ORF1ab/nsp3994A994EgCTgAA12All0
ORF1ab/nsp3994A994DgCtgAt22AY.1020.000053
ORF1ab/nsp3994A994TGctAct22AY.1020.000053
ORF1ab/nsp3994A994DgCtgAt22AY.1030.000012
ORF1ab/nsp3994A994AgcTgcC22AY.1170.000169
ORF1ab/nsp3994A994VgCtgTt22AY.160.000759
ORF1ab/nsp3994A994TGctAct22AY.200.000078
ORF1ab/nsp3994A994delGCT---22AY.250.000012
ORF1ab/nsp3994A994AgcTgcC22AY.260.000057
ORF1ab/nsp3994A994AgcTgcC12AY.270.000065
ORF1ab/nsp3994A994AgcTgcA12AY.270.000065
ORF1ab/nsp3994A994VgCtgTt22AY.330.000134
ORF1ab/nsp3994A994AgcTgcC22AY.39.10.000079
ORF1ab/nsp3994A994TGctAct22AY.440.000012
ORF1ab/nsp3994A994TGctAct22AY.450.000243
ORF1ab/nsp3994A994AgcTgcG12AY.460.000104
ORF1ab/nsp3994A994AgcTgcA12AY.460.000104
ORF1ab/nsp3994A994VgCtgTt22AY.610.00021
ORF1ab/nsp3994A994AgcTgcG12AY.610.000105
ORF1ab/nsp3994A994AgcTgcA12AY.610.000105
ORF1ab/nsp3994A994VgCtgTt22AY.700.000417
ORF1ab/nsp3994A994VgCtgTt22AY.98.10.000097
ORF1ab/nsp3994A994TGctAct22AY.98.10.000097
ORF1ab/nsp3994A994PGcTCcC12B0.000128
ORF1ab/nsp3994A994PGctCct12B0.000128
ORF1ab/nsp3994A994SGctTct22B.1.10.000036
ORF1ab/nsp3994A994AgcTgcA12B.1.10.000018
ORF1ab/nsp3994A994AgcTgcC12B.1.10.000018
ORF1ab/nsp3994A994TGctAct22B.1.1.1710.007353
ORF1ab/nsp3994A994VgCtgTt22B.1.1.2140.000111
ORF1ab/nsp3994A994VgCtgTt22B.1.1.2690.002706
ORF1ab/nsp3994A994VgCtgTt22B.1.1.3110.000716
ORF1ab/nsp3994A994VgCtgTt22B.1.1.3180.000604
ORF1ab/nsp3994A994PGctCct22B.1.1.70.000002
ORF1ab/nsp3994A994VgCtgTt22B.1.1110.00235
ORF1ab/nsp3994A994AgcTgcC22B.1.177.810.000379
ORF1ab/nsp3994A994DgCtgAt22B.1.20.000018
ORF1ab/nsp3994A994SGctTct22B.1.20.000018
ORF1ab/nsp3994A994VgCtgTt22B.1.2340.000264
ORF1ab/nsp3994A994DgCtgAt22B.1.2410.001623
ORF1ab/nsp3994A994TGctAct22B.1.2430.000139
ORF1ab/nsp3994A994AgcTgcC22B.1.2580.000133
ORF1ab/nsp3994A994VgCtgTt22B.1.258.170.000208
ORF1ab/nsp3994A994AgcTgcC22B.1.258.170.000208
ORF1ab/nsp3994A994del1gCtg-t22B.1.360.000292
ORF1ab/nsp3994A994delGCT---22B.1.360.000292
ORF1ab/nsp3994A994AgcTgcA22B.1.466.20.000782
ORF1ab/nsp3994A994VgCtgTt22B.1.4700.002809
ORF1ab/nsp3994A994delGCT---22B.1.617.20.000008
ORF1ab/nsp3994A994delGCT---22B.1.6370.000146
ORF1ab/nsp3994A994VgCtgTt22B.1.6370.000146
ORF1ab/nsp3994A994DgCtgAt22P.10.000032
ORF1ab/nsp3994A994AgcTgcC22Q.80.00033
ORF1ab/nsp3994A994SGctTct110.055556
ORF1ab/nsp3994A994VgCtgTt110.055556
ORF1ab/nsp3994A994CGCtTGt110.055556
ORF1ab/nsp3994A994GgCtgGt110.055556
ORF1ab/nsp3994A994FGCtTTt110.055556
ORF1ab/nsp3994A994AgcTgcA11A0.000387
ORF1ab/nsp3994A994TGctAct11A.190.009434
ORF1ab/nsp3994A994VgCtgTt11A.20.000662
ORF1ab/nsp3994A994delGCT---11A.2.20.001689
ORF1ab/nsp3994A994GgCtgGt11AE.80.000489
ORF1ab/nsp3994A994CGCtTGt11All0
ORF1ab/nsp3994A994RGCTCGA11All0
ORF1ab/nsp3994A994NGCtAAt11All0
ORF1ab/nsp3994A994LGCtCTt11All0
ORF1ab/nsp3994A994DgCtgAt11AT.10.005128
ORF1ab/nsp3994A994DgCtgAt11AY.1000.000046
ORF1ab/nsp3994A994SGctTct11AY.1000.000046
ORF1ab/nsp3994A994delGCT---11AY.1020.000027
ORF1ab/nsp3994A994TGctAct11AY.1030.000006
ORF1ab/nsp3994A994del1gCtg-t11AY.1030.000006
ORF1ab/nsp3994A994AgcTgcG11AY.1080.001103
ORF1ab/nsp3994A994TGctAct11AY.1130.000142
ORF1ab/nsp3994A994VgCtgTt11AY.1180.000063
ORF1ab/nsp3994A994AgcTgcC11AY.1180.000063
ORF1ab/nsp3994A994AgcTgcA11AY.1190.000035
ORF1ab/nsp3994A994DgCtgAt11AY.1200.000037
ORF1ab/nsp3994A994delGCT---11AY.1200.000037
ORF1ab/nsp3994A994SGctTct11AY.1200.000037
ORF1ab/nsp3994A994AgcTgcG11AY.1200.000037
ORF1ab/nsp3994A994DgCtgAt11AY.1210.000135
ORF1ab/nsp3994A994VgCtgTt11AY.130.000161
ORF1ab/nsp3994A994del1gCtg-t11AY.160.00038
ORF1ab/nsp3994A994VgCtgTt11AY.16.10.00047
ORF1ab/nsp3994A994AgcTgcG11AY.16.10.00047
ORF1ab/nsp3994A994VgCtgTt11AY.20.000356
ORF1ab/nsp3994A994AgcTgcG11AY.200.000039
ORF1ab/nsp3994A994VgCtgTt11AY.200.000039
ORF1ab/nsp3994A994DgCtgAt11AY.230.00007
ORF1ab/nsp3994A994AgcTgcC11AY.230.00007
ORF1ab/nsp3994A994DgCtgAt11AY.250.000006
ORF1ab/nsp3994A994del1Gct-ct11AY.250.000006
ORF1ab/nsp3994A994SGctTct11AY.250.000006
ORF1ab/nsp3994A994del2GCt--t11AY.250.000006
ORF1ab/nsp3994A994TGctAct11AY.260.000028
ORF1ab/nsp3994A994delGCT---11AY.260.000028
ORF1ab/nsp3994A994TGctAct11AY.30.00001
ORF1ab/nsp3994A994VgCtgTt11AY.3.10.000085
ORF1ab/nsp3994A994VgCtgTt11AY.320.000532
ORF1ab/nsp3994A994TGctAct11AY.340.000097
ORF1ab/nsp3994A994AgcTgcG11AY.34.10.00051
ORF1ab/nsp3994A994AgcTgcG11AY.350.000233
ORF1ab/nsp3994A994AgcTgcC11AY.390.000025
ORF1ab/nsp3994A994GgCtgGt11AY.390.000025
ORF1ab/nsp3994A994TGctAct11AY.390.000025
ORF1ab/nsp3994A994SGctTct11AY.390.000025
ORF1ab/nsp3994A994PGctCct11AY.390.000025
ORF1ab/nsp3994A994DgCtgAt11AY.390.000025
ORF1ab/nsp3994A994PGctCct11AY.40.000002
ORF1ab/nsp3994A994VgCtgTt11AY.4.2.10.000149
ORF1ab/nsp3994A994AgcTgcC11AY.420.00004
ORF1ab/nsp3994A994delGCT---11AY.430.000004
ORF1ab/nsp3994A994del1gCtg-t11AY.440.000006
ORF1ab/nsp3994A994AgcTgcG11AY.450.000122
ORF1ab/nsp3994A994VgCtgTt11AY.46.10.001027
ORF1ab/nsp3994A994VgCtgTt11AY.46.60.000072
ORF1ab/nsp3994A994VgCtgTt11AY.480.000465
ORF1ab/nsp3994A994VgCtgTt11AY.50.000021
ORF1ab/nsp3994A994AgcTgcG11AY.5.30.000337
ORF1ab/nsp3994A994AgcTgcC11AY.5.40.000277
ORF1ab/nsp3994A994VgCtgTt11AY.520.000814
ORF1ab/nsp3994A994DgCtgAt11AY.520.000814
ORF1ab/nsp3994A994VgCtgTt11AY.540.000095
ORF1ab/nsp3994A994VgCtgTt11AY.550.000917
ORF1ab/nsp3994A994AgcTgcC11AY.590.00053
ORF1ab/nsp3994A994VgCtgTt11AY.590.00053
ORF1ab/nsp3994A994SGctTct11AY.610.000105
ORF1ab/nsp3994A994VgCtgTt11AY.620.000436
ORF1ab/nsp3994A994DgCtgAt11AY.650.000533
ORF1ab/nsp3994A994delGCT---11AY.670.000464
ORF1ab/nsp3994A994DgCtgAt11AY.680.000274
ORF1ab/nsp3994A994VgCtgTt11AY.680.000274
ORF1ab/nsp3994A994TGcTAcA11AY.690.000187
ORF1ab/nsp3994A994AgcTgcG11AY.70.000196
ORF1ab/nsp3994A994SGctTct11AY.7.10.000113
ORF1ab/nsp3994A994VgCtgTt11AY.7.10.000113
ORF1ab/nsp3994A994VgCtgTt11AY.710.000475
ORF1ab/nsp3994A994delGCT---11AY.750.000056
ORF1ab/nsp3994A994VgCtgTt11AY.750.000056
ORF1ab/nsp3994A994VgCtgTt11AY.75.10.00018
ORF1ab/nsp3994A994RGCTCGA11AY.75.10.00018
ORF1ab/nsp3994A994AgcTgcC11AY.780.001541
ORF1ab/nsp3994A994AgcTgcC11AY.850.000427
ORF1ab/nsp3994A994VgCtgTt11AY.90.000068
ORF1ab/nsp3994A994SGctTct11AY.90.000068
ORF1ab/nsp3994A994SGctTct11AY.9.10.000084
ORF1ab/nsp3994A994del2GCt--t11AY.9.20.000037
ORF1ab/nsp3994A994VgCtgTt11AY.9.20.000037
ORF1ab/nsp3994A994VgCtgTt11AY.910.00073
ORF1ab/nsp3994A994VgCtgTt11AY.930.000273
ORF1ab/nsp3994A994AgcTgcC11AY.970.001701
ORF1ab/nsp3994A994AgcTgcC11AY.980.000079
ORF1ab/nsp3994A994VgCtgTt11AY.990.001049
ORF1ab/nsp3994A994AgcTgcC11B0.000128
ORF1ab/nsp3994A994EgCTgAG11B.10.000009
ORF1ab/nsp3994A994PGctCct11B.10.000009
ORF1ab/nsp3994A994del1gCtg-t11B.1.10.000018
ORF1ab/nsp3994A994TGctAct11B.1.1.10.000327
ORF1ab/nsp3994A994VgCtgTt11B.1.1.100.001115
ORF1ab/nsp3994A994del1gCtg-t11B.1.1.1210.002427
ORF1ab/nsp3994A994delGCT---11B.1.1.1390.022727
ORF1ab/nsp3994A994delGCT---11B.1.1.1420.017544
ORF1ab/nsp3994A994AgcTgcC11B.1.1.1530.001095
ORF1ab/nsp3994A994VgCtgTt11B.1.1.1570.000913
ORF1ab/nsp3994A994delGCT---11B.1.1.1590.004673
ORF1ab/nsp3994A994VgCtgTt11B.1.1.1590.004673
ORF1ab/nsp3994A994AgcTgcG11B.1.1.2220.000204
ORF1ab/nsp3994A994VgCtgTt11B.1.1.2770.000759
ORF1ab/nsp3994A994VgCtgTt11B.1.1.280.000311
ORF1ab/nsp3994A994VgCtgTt11B.1.1.2970.002237
ORF1ab/nsp3994A994DgCtgAt11B.1.1.3030.002762
ORF1ab/nsp3994A994NGCtAAt11B.1.1.3060.000438
ORF1ab/nsp3994A994delGCT---11B.1.1.3150.008475
ORF1ab/nsp3994A994SGctTct11B.1.1.3290.003846
ORF1ab/nsp3994A994AgcTgcG11B.1.1.3340.016393
ORF1ab/nsp3994A994DgCtgAt11B.1.1.370.000193
ORF1ab/nsp3994A994TGctAct11B.1.1.3890.006061
ORF1ab/nsp3994A994VgCtgTt11B.1.1.4320.001266
ORF1ab/nsp3994A994VgCtgTt11B.1.1.4340.000349
ORF1ab/nsp3994A994del1gCtg-t11B.1.1.4480.002033
ORF1ab/nsp3994A994TGctAct11B.1.1.460.004367
ORF1ab/nsp3994A994AgcTgcC11B.1.1.4640.001473
ORF1ab/nsp3994A994DgCtgAt11B.1.1.5260.003546
ORF1ab/nsp3994A994AgcTgcG11B.1.1.5260.003546
ORF1ab/nsp3994A994TGctAct11B.1.1.630.000386
ORF1ab/nsp3994A994EgCTgAA11B.1.1.70.000001
ORF1ab/nsp3994A994GgCtgGt11B.1.1.70.000001
ORF1ab/nsp3994A994del2GCt--t11B.1.1.70.000001
ORF1ab/nsp3994A994VgCtgTt11B.1.110.30.000718
ORF1ab/nsp3994A994TGctAct11B.1.1280.000635
ORF1ab/nsp3994A994DgCtgAt11B.1.1280.000635
ORF1ab/nsp3994A994AgcTgcC11B.1.1600.000031
ORF1ab/nsp3994A994DgCtgAt11B.1.160.160.000929
ORF1ab/nsp3994A994TGctAct11B.1.1770.000013
ORF1ab/nsp3994A994SGctTct11B.1.1770.000013
ORF1ab/nsp3994A994VgCtgTt11B.1.177.210.000076
ORF1ab/nsp3994A994delGCT---11B.1.177.450.000381
ORF1ab/nsp3994A994VgCtgTt11B.1.177.50.001242
ORF1ab/nsp3994A994VgCtgTt11B.1.177.600.000218
ORF1ab/nsp3994A994VgCtgTt11B.1.177.70.000165
ORF1ab/nsp3994A994DgCtgAt11B.1.177.830.001481
ORF1ab/nsp3994A994TGctAct11B.1.20.000009
ORF1ab/nsp3994A994GgCtgGt11B.1.20.000009
ORF1ab/nsp3994A994DgCtgAt11B.1.2140.003663
ORF1ab/nsp3994A994del1gCtg-t11B.1.2210.000071
ORF1ab/nsp3994A994VgCtgTt11B.1.2210.000071
ORF1ab/nsp3994A994VgCtgTt11B.1.2400.000216
ORF1ab/nsp3994A994SGctTct11B.1.2430.00007
ORF1ab/nsp3994A994PGctCct11B.1.2580.000067
ORF1ab/nsp3994A994delGCT---11B.1.2580.000067
ORF1ab/nsp3994A994DgCtgAt11B.1.2600.003344
ORF1ab/nsp3994A994DgCtgAt11B.1.2790.000514
ORF1ab/nsp3994A994delGCT---11B.1.3190.003049
ORF1ab/nsp3994A994AgcTgcG11B.1.3200.001245
ORF1ab/nsp3994A994DgCtgAt11B.1.3200.001245
ORF1ab/nsp3994A994SGctTct11B.1.3500.002933
ORF1ab/nsp3994A994AgcTgcG11B.1.3510.00003
ORF1ab/nsp3994A994SGctTct11B.1.3510.00003
ORF1ab/nsp3994A994TGctAct11B.1.351.20.000303
ORF1ab/nsp3994A994VgCtgTt11B.1.351.20.000303
ORF1ab/nsp3994A994SGctTct11B.1.360.000146
ORF1ab/nsp3994A994DgCtgAt11B.1.36.100.004785
ORF1ab/nsp3994A994DgCtgAt11B.1.36.170.000494
ORF1ab/nsp3994A994delGCT---11B.1.36.180.00042
ORF1ab/nsp3994A994VgCtgTt11B.1.36.290.000517
ORF1ab/nsp3994A994DgCtgAt11B.1.36.80.001
ORF1ab/nsp3994A994VgCtgTt11B.1.3620.001541
ORF1ab/nsp3994A994DgCtgAt11B.1.3670.000792
ORF1ab/nsp3994A994VgCtgTt11B.1.3690.000285
ORF1ab/nsp3994A994VgCtgTt11B.1.4340.052632
ORF1ab/nsp3994A994DgCtgAt11B.1.4620.007246
ORF1ab/nsp3994A994DgCtgAt11B.1.5030.002488
ORF1ab/nsp3994A994VgCtgTt11B.1.5250.000113
ORF1ab/nsp3994A994SGctTct11B.1.5260.000024
ORF1ab/nsp3994A994DgCtgAt11B.1.5260.000024
ORF1ab/nsp3994A994del1GCtA-t11B.1.5380.008065
ORF1ab/nsp3994A994VgCtgTt11B.1.5610.000397
ORF1ab/nsp3994A994VgCtgTt11B.1.5770.000687
ORF1ab/nsp3994A994del1Gct-ct11B.1.5820.000491
ORF1ab/nsp3994A994VgCtgTt11B.1.5820.000491
ORF1ab/nsp3994A994AgcTgcC11B.1.5960.000087
ORF1ab/nsp3994A994del1gCtg-t11B.1.617.10.000129
ORF1ab/nsp3994A994AgcTgcC11B.1.617.10.000129
ORF1ab/nsp3994A994del2GCt--t11B.1.617.20.000004
ORF1ab/nsp3994A994LGCtCTt11B.1.617.20.000004
ORF1ab/nsp3994A994TGctAct11B.1.6210.000089
ORF1ab/nsp3994A994VgCtgTt11B.1.6280.000352
ORF1ab/nsp3994A994TGctAct11B.1.6320.006711
ORF1ab/nsp3994A994del2GCt--t11B.1.6370.000073
ORF1ab/nsp3994A994delGCT---11B.150.017544
ORF1ab/nsp3994A994delGCT---11B.340.013699
ORF1ab/nsp3994A994VgCtgTt11B.40.002208
ORF1ab/nsp3994A994VgCtgTt11B.400.000364
ORF1ab/nsp3994A994VgCtgTt11C.350.000774
ORF1ab/nsp3994A994AgcTgcA11C.350.000774
ORF1ab/nsp3994A994FGCTTTC11C.350.000774
ORF1ab/nsp3994A994AgcTgcC11C.370.000116
ORF1ab/nsp3994A994VgCtgTt11C.370.000116
ORF1ab/nsp3994A994delGCT---11C.370.000116
ORF1ab/nsp3994A994SGctTct11D.20.000075
ORF1ab/nsp3994A994VgCtgTt11D.20.000075
ORF1ab/nsp3994A994AgcTgcA11L.30.003546
ORF1ab/nsp3994A994VgCtgTt11N.90.005952
ORF1ab/nsp3994A994TGctAct11P.20.000187
ORF1ab/nsp3994A994VgCtgTt11P.20.000187
ORF1ab/nsp3994A994AgcTgcC11Q.10.000126
ORF1ab/nsp3994A994delGCT---11Q.20.000613
ORF1ab/nsp3994A994VgCtgTt11Q.30.000145
ORF1ab/nsp3994A994VgCtgTt11Q.80.000165
ORF1ab/nsp3994A994VgCtgTt11V.10.022727