CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 985 & Codon = cTt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3985P985LP1803LnonsyncCtcTt130313020.9992335672-5674

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3985P985LcCtcTt13021303All0.000249
ORF1ab/nsp3985P985LcCtcTt515515AY.40.000802
ORF1ab/nsp3985P985LcCtcTt172172R.10.015482
ORF1ab/nsp3985P985LcCtcTt110110B.1.1770.001448
ORF1ab/nsp3985P985LcCtcTt6363B.1.617.20.000237
ORF1ab/nsp3985P985LcCtcTt5656B.1.3620.086287
ORF1ab/nsp3985P985LcCtcTt4646B.1.1.70.000041
ORF1ab/nsp3985P985LcCtcTt4040B.1.10.000726
ORF1ab/nsp3985P985LcCtcTt2324AY.440.00014
ORF1ab/nsp3985P985LcCtcTt2222B.1.20.000194
ORF1ab/nsp3985P985LcCtcTt2121AY.1030.00013
ORF1ab/nsp3985P985LcCtcTt1717AY.430.000075
ORF1ab/nsp3985P985LcCtcTt1515B.1.5960.001307
ORF1ab/nsp3985P985LcCtcTt1212P.1.150.002788
ORF1ab/nsp3985P985LcCtcTt1111B.1.5170.004697
ORF1ab/nsp3985P985LcCtcTt1111P.10.000173
ORF1ab/nsp3985P985LcCtcTt1010AY.1200.000372
ORF1ab/nsp3985P985LcCtcTt1010AY.250.00006
ORF1ab/nsp3985P985LcCtcTt1010AY.30.000099
ORF1ab/nsp3985P985LcCtcTt88AY.1190.000282
ORF1ab/nsp3985P985LcCtcTt77AY.1020.000186
ORF1ab/nsp3985P985LcCtcTt77B.10.000064
ORF1ab/nsp3985P985LcCtcTt77B.1.5260.000165
ORF1ab/nsp3985P985LcCtcTt55AY.390.000124
ORF1ab/nsp3985P985LcCtcTt55AY.4.40.002046
ORF1ab/nsp3985P985LcCtcTt55B.1.4290.000118
ORF1ab/nsp3985P985LcCtcTt44AY.1160.001147
ORF1ab/nsp3985P985LcCtcTt44AY.46.40.000658
ORF1ab/nsp3985P985LcCtcTt44AY.980.000316
ORF1ab/nsp3985P985LcCtcTt44B.1.2400.000862
ORF1ab/nsp3985P985LcCtcTt44B.1.4050.049383
ORF1ab/nsp3985P985LcCtcTt33AY.1000.000138
ORF1ab/nsp3985P985LcCtcTt33AY.4.20.000065
ORF1ab/nsp3985P985LcCtcTt33B.1.1.2160.002671
ORF1ab/nsp3985P985LcCtcTt22AY.1110.000366
ORF1ab/nsp3985P985LcCtcTt22AY.140.000176
ORF1ab/nsp3985P985LcCtcTt22B.1.1.4260.071429
ORF1ab/nsp3985P985LcCtcTt22B.1.1.4340.000697
ORF1ab/nsp3985P985LcCtcTt22B.1.1.5190.000079
ORF1ab/nsp3985P985LcCtcTt22B.1.1600.000062
ORF1ab/nsp3985P985LcCtcTt22B.1.177.70.00033
ORF1ab/nsp3985P985LcCtcTt22B.1.3110.000549
ORF1ab/nsp3985P985LcCtcTt22B.1.3690.00057
ORF1ab/nsp3985P985LcCtcTt22B.1.4270.000101
ORF1ab/nsp3985P985LcCtcTt22B.1.5250.000226
ORF1ab/nsp3985P985LcCtcTt22B.1.6210.000177
ORF1ab/nsp3985P985LcCtcTt11A0.000387
ORF1ab/nsp3985P985LcCtcTt11A.2.30.004739
ORF1ab/nsp3985P985LcCtcTt11A.2.50.000499
ORF1ab/nsp3985P985LcCtcTt11AT.10.005128
ORF1ab/nsp3985P985LcCtcTt11AY.100.00053
ORF1ab/nsp3985P985LcCtcTt11AY.1010.00049
ORF1ab/nsp3985P985LcCtcTt11AY.1140.000231
ORF1ab/nsp3985P985LcCtcTt11AY.1210.000135
ORF1ab/nsp3985P985LcCtcTt11AY.200.000039
ORF1ab/nsp3985P985LcCtcTt11AY.230.00007
ORF1ab/nsp3985P985LcCtcTt11AY.3.10.000085
ORF1ab/nsp3985P985LcCtcTt11AY.340.000097
ORF1ab/nsp3985P985LcCtcTt11AY.360.000148
ORF1ab/nsp3985P985LcCtcTt11AY.39.10.00004
ORF1ab/nsp3985P985LcCtcTt11AY.420.00004
ORF1ab/nsp3985P985LcCtcTt11AY.50.000021
ORF1ab/nsp3985P985LcCtcTt11AY.610.000105
ORF1ab/nsp3985P985LcCtcTt11AY.700.000209
ORF1ab/nsp3985P985LcCtcTt11AY.930.000273
ORF1ab/nsp3985P985LcCtcTt11B0.000128
ORF1ab/nsp3985P985LcCtcTt11B.1.1.1610.003534
ORF1ab/nsp3985P985LcCtcTt11B.1.1.250.000569
ORF1ab/nsp3985P985LcCtcTt11B.1.1.2630.001558
ORF1ab/nsp3985P985LcCtcTt11B.1.1.2840.000107
ORF1ab/nsp3985P985LcCtcTt11B.1.1.3170.000412
ORF1ab/nsp3985P985LcCtcTt11B.1.1.330.000421
ORF1ab/nsp3985P985LcCtcTt11B.1.177.570.000281
ORF1ab/nsp3985P985LcCtcTt11B.1.177.730.000566
ORF1ab/nsp3985P985LcCtcTt11B.1.2580.000067
ORF1ab/nsp3985P985LcCtcTt11B.1.258.70.001912
ORF1ab/nsp3985P985LcCtcTt11B.1.3510.00003
ORF1ab/nsp3985P985LcCtcTt11B.1.36.180.00042
ORF1ab/nsp3985P985LcCtcTt11B.1.4110.003704
ORF1ab/nsp3985P985LcCtcTt11B.1.5470.02439
ORF1ab/nsp3985P985LcCtcTt11B.1.5600.00463
ORF1ab/nsp3985P985LcCtcTt11B.1.6090.000479
ORF1ab/nsp3985P985LcCtcTt11B.1.621.10.000506
ORF1ab/nsp3985P985LcCtcTt11B.1.6280.000352
ORF1ab/nsp3985P985LcCtcTt11C.230.005814
ORF1ab/nsp3985P985LcCtcTt11P.1.140.000048
ORF1ab/nsp3985P985LcCtcTt11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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