CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 985 | P985S | P1803S | nonsyn | Cct | Tct | 5161 | 5159 | 0.999612 | 5672-5674 |
ORF1ab/nsp3 | 985 | P985S | P1803S | nonsyn | CcT | TcC | 5161 | 2 | 0.000387522 | 5672-5674 |
ORF1ab/nsp3 | 985 | P985L | P1803L | nonsyn | cCt | cTt | 1303 | 1302 | 0.999233 | 5672-5674 |
ORF1ab/nsp3 | 985 | P985L | P1803L | nonsyn | cCT | cTC | 1303 | 1 | 0.00076746 | 5672-5674 |
ORF1ab/nsp3 | 985 | P985T | P1803T | nonsyn | Cct | Act | 294 | 294 | 1 | 5672-5674 |
ORF1ab/nsp3 | 985 | P985P | P1803P | syn | ccT | ccC | 211 | 178 | 0.843602 | 5672-5674 |
ORF1ab/nsp3 | 985 | P985P | P1803P | syn | ccT | ccG | 211 | 20 | 0.0947867 | 5672-5674 |
ORF1ab/nsp3 | 985 | P985P | P1803P | syn | ccT | ccA | 211 | 13 | 0.0616114 | 5672-5674 |
ORF1ab/nsp3 | 985 | P985H | P1803H | nonsyn | cCt | cAt | 103 | 103 | 1 | 5672-5674 |
ORF1ab/nsp3 | 985 | P985del1 | P1803del1 | del | ccT | cc- | 43 | 43 | 1 | 5672-5674 |
ORF1ab/nsp3 | 985 | P985del | P1803del | del | CCT | --- | 29 | 29 | 1 | 5672-5674 |
ORF1ab/nsp3 | 985 | P985A | P1803A | nonsyn | Cct | Gct | 9 | 9 | 1 | 5672-5674 |
ORF1ab/nsp3 | 985 | P985R | P1803R | nonsyn | cCt | cGt | 6 | 5 | 0.833333 | 5672-5674 |
ORF1ab/nsp3 | 985 | P985R | P1803R | nonsyn | CCT | AGG | 6 | 1 | 0.166667 | 5672-5674 |
ORF1ab/nsp3 | 985 | P985Q | P1803Q | nonsyn | cCT | cAA | 1 | 1 | 1 | 5672-5674 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 5159 | 5161 | All | 0.000987 |
ORF1ab/nsp3 | 985 | P985S | CcT | TcC | 2 | 5161 | All | 0 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 1302 | 1303 | All | 0.000249 |
ORF1ab/nsp3 | 985 | P985L | cCT | cTC | 1 | 1303 | All | 0 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1127 | 1127 | B.1.139 | 0.826246 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 910 | 910 | B.1.1.7 | 0.000815 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 515 | 515 | AY.4 | 0.000802 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 473 | 473 | AY.4 | 0.000736 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 359 | 359 | AY.93 | 0.098034 |
ORF1ab/nsp3 | 985 | P985T | Cct | Act | 294 | 294 | All | 0.000056 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 178 | 211 | All | 0.000034 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccG | 20 | 211 | All | 0.000004 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccA | 13 | 211 | All | 0.000002 |
ORF1ab/nsp3 | 985 | P985T | Cct | Act | 211 | 211 | B.1.1.7 | 0.000189 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 172 | 172 | R.1 | 0.015482 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 127 | 127 | B.1.617.2 | 0.000478 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 110 | 110 | B.1.177 | 0.001448 |
ORF1ab/nsp3 | 985 | P985H | cCt | cAt | 103 | 103 | All | 0.00002 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 99 | 99 | AY.43 | 0.000439 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 98 | 98 | B.1.2 | 0.000863 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 97 | 97 | B.1.375 | 0.079508 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 89 | 89 | B.1.36.36 | 0.053582 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 86 | 86 | P.1 | 0.001355 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 85 | 85 | B.1 | 0.000779 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 80 | 80 | B.1.534 | 1 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 63 | 63 | B.1.617.2 | 0.000237 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 56 | 56 | B.1.362 | 0.086287 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 54 | 55 | AY.103 | 0.000335 |
ORF1ab/nsp3 | 985 | P985S | CcT | TcC | 1 | 55 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 55 | 55 | AY.25 | 0.000331 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 55 | 55 | B.1.160 | 0.001715 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 50 | 50 | B.1.160.10 | 0.403226 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 46 | 46 | B.1.1.7 | 0.000041 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 46 | 46 | U.1 | 0.589744 |
ORF1ab/nsp3 | 985 | P985del1 | ccT | cc- | 43 | 43 | All | 0.000008 |
ORF1ab/nsp3 | 985 | P985T | Cct | Act | 42 | 42 | AY.44 | 0.000256 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 40 | 40 | B.1.1 | 0.000726 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 37 | 37 | AY.120 | 0.001376 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 37 | 37 | AY.46.6 | 0.002672 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 37 | 37 | B.1.351 | 0.0011 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 36 | 36 | AY.29 | 0.000568 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 36 | 36 | B.1.1 | 0.000653 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 36 | 36 | B.1.1.39 | 0.018349 |
ORF1ab/nsp3 | 985 | P985H | cCt | cAt | 35 | 35 | AY.4 | 0.000054 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 35 | 35 | AY.44 | 0.000213 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 33 | 33 | B.1.429 | 0.000776 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 32 | 32 | AY.4.2 | 0.000694 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 30 | 30 | AY.4.5 | 0.003225 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 30 | 30 | B.1.177 | 0.000395 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 30 | 30 | P.2 | 0.005599 |
ORF1ab/nsp3 | 985 | P985del | CCT | --- | 29 | 29 | All | 0.000006 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 27 | 27 | AY.3 | 0.000269 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 27 | 27 | B.1.243 | 0.001879 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 26 | 26 | C.37 | 0.003018 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 25 | 25 | B.1.1.214 | 0.001386 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 23 | 24 | AY.44 | 0.00014 |
ORF1ab/nsp3 | 985 | P985L | cCT | cTC | 1 | 24 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 23 | 23 | B.1.1.318 | 0.00694 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 22 | 22 | AY.33 | 0.001469 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 14 | 22 | B.1.1.7 | 0.000013 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccG | 6 | 22 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccA | 2 | 22 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 22 | 22 | B.1.2 | 0.000194 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 22 | 22 | B.1.351.5 | 0.013189 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 21 | 21 | AY.103 | 0.00013 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 21 | 21 | AY.20 | 0.000816 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 21 | 21 | B.1.1.519 | 0.000834 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 21 | 21 | B.1.621 | 0.001859 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 20 | 20 | AY.26 | 0.000566 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 20 | 20 | B.1.177.57 | 0.00562 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 19 | 19 | AY.118 | 0.00119 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 19 | 19 | B.1.526 | 0.000447 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 18 | 18 | B.1 | 0.000165 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 18 | 18 | B.1.574 | 0.03871 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 17 | 17 | AY.43 | 0.000075 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 17 | 17 | B.1.438.1 | 0.001823 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 16 | 16 | B.1.177.60 | 0.003495 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 15 | 15 | B.1.596 | 0.001307 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 14 | 14 | AY.102 | 0.000371 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 14 | 14 | AY.103 | 0.000087 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 14 | 14 | B.1.221 | 0.000994 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 13 | 13 | AY.23 | 0.000907 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 13 | 13 | AY.39 | 0.000321 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 13 | 13 | AY.44 | 0.000079 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 13 | 13 | B.1.637 | 0.00095 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 12 | 12 | A.2.5.2 | 0.018868 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 12 | 12 | AY.100 | 0.000552 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 12 | 12 | B.1.369 | 0.003423 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 12 | 12 | P.1.15 | 0.002788 |
ORF1ab/nsp3 | 985 | P985del | CCT | --- | 11 | 11 | B.1.1.7 | 0.00001 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 11 | 11 | B.1.36.8 | 0.011 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 11 | 11 | B.1.517 | 0.004697 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 10 | 11 | B.1.617.2 | 0.000038 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccA | 1 | 11 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 11 | 11 | P.1 | 0.000173 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 10 | 10 | AY.120 | 0.000372 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 10 | 10 | AY.25 | 0.00006 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 10 | 10 | AY.3 | 0.000099 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 10 | 10 | AY.4.2.1 | 0.00149 |
ORF1ab/nsp3 | 985 | P985del1 | ccT | cc- | 10 | 10 | AY.44 | 0.000061 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 10 | 10 | B.1.258 | 0.000665 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 10 | 10 | P.1.14 | 0.000478 |
ORF1ab/nsp3 | 985 | P985A | Cct | Gct | 9 | 9 | All | 0.000002 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 9 | 9 | AY.42 | 0.000362 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 9 | 9 | B.1.177.54 | 0.005458 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 9 | 9 | B.1.177.81 | 0.001704 |
ORF1ab/nsp3 | 985 | P985del1 | ccT | cc- | 9 | 9 | B.1.2 | 0.000079 |
ORF1ab/nsp3 | 985 | P985H | cCt | cAt | 9 | 9 | P.1 | 0.000142 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 8 | 8 | AY.119 | 0.000282 |
ORF1ab/nsp3 | 985 | P985T | Cct | Act | 8 | 8 | AY.4 | 0.000012 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 7 | 8 | AY.43 | 0.000031 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccA | 1 | 8 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 8 | 8 | AY.45 | 0.000973 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 8 | 8 | AY.5 | 0.000165 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 8 | 8 | AY.6 | 0.000329 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 8 | 8 | B.1.1.50 | 0.005431 |
ORF1ab/nsp3 | 985 | P985H | cCt | cAt | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 7 | 7 | AY.46.4 | 0.001152 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 7 | 7 | B.1.1.306 | 0.003069 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 7 | 7 | B.1.526 | 0.000165 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 7 | 7 | P.1.17 | 0.001132 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 7 | 7 | R.1 | 0.00063 |
ORF1ab/nsp3 | 985 | P985R | cCt | cGt | 5 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 985 | P985R | CCT | AGG | 1 | 6 | All | 0 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 6 | 6 | AY.119 | 0.000212 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 6 | 6 | AY.54 | 0.000572 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 6 | 6 | AY.9 | 0.000406 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 4 | 6 | B.1.1 | 0.000073 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccA | 1 | 6 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccG | 1 | 6 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 5 | 6 | B.1.351 | 0.000149 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccA | 1 | 6 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 6 | 6 | B.1.416.1 | 0.009375 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 6 | 6 | B.1.427 | 0.000303 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 6 | 6 | B.1.428 | 0.006122 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 6 | 6 | B.1.575.1 | 0.014634 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 6 | 6 | B.1.595 | 0.001566 |
ORF1ab/nsp3 | 985 | P985H | cCt | cAt | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp3 | 985 | P985T | Cct | Act | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 5 | 5 | AY.14 | 0.00044 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 5 | 5 | AY.4.4 | 0.002046 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 5 | 5 | AY.74 | 0.000578 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 5 | 5 | AY.75 | 0.00028 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 5 | 5 | AY.99.2 | 0.000461 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 5 | 5 | B.1.160 | 0.000156 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 5 | 5 | B.1.36.29 | 0.002587 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 5 | 5 | B.1.429 | 0.000118 |
ORF1ab/nsp3 | 985 | P985H | cCt | cAt | 5 | 5 | B.1.525 | 0.000566 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 5 | 5 | B.1.575 | 0.001517 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 5 | 5 | B.1.617.1 | 0.000645 |
ORF1ab/nsp3 | 985 | P985T | Cct | Act | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 5 | 5 | Q.8 | 0.000825 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 4 | 4 | AY.116 | 0.001147 |
ORF1ab/nsp3 | 985 | P985H | cCt | cAt | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp3 | 985 | P985H | cCt | cAt | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 4 | 4 | AY.46.4 | 0.000658 |
ORF1ab/nsp3 | 985 | P985H | cCt | cAt | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 4 | 4 | AY.88 | 0.003537 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 4 | 4 | AY.9.1 | 0.000335 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 4 | 4 | AY.98 | 0.000316 |
ORF1ab/nsp3 | 985 | P985T | Cct | Act | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 4 | 4 | B.1.1.216 | 0.003562 |
ORF1ab/nsp3 | 985 | P985A | Cct | Gct | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 4 | 4 | B.1.169 | 0.059701 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 4 | 4 | B.1.240 | 0.000862 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 4 | 4 | B.1.405 | 0.049383 |
ORF1ab/nsp3 | 985 | P985del1 | ccT | cc- | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 4 | 4 | B.1.621.1 | 0.002023 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 4 | 4 | Q.1 | 0.000505 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 3 | 3 | AY.1 | 0.001187 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 3 | 3 | AY.109 | 0.002219 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 2 | 3 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccG | 1 | 3 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp3 | 985 | P985H | cCt | cAt | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccG | 2 | 3 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 1 | 3 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 3 | 3 | B | 0.000383 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 3 | 3 | B.1.1.169 | 0.054545 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp3 | 985 | P985R | cCt | cGt | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 3 | 3 | B.1.1.70 | 0.001023 |
ORF1ab/nsp3 | 985 | P985H | cCt | cAt | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 3 | 3 | B.1.177.52 | 0.005272 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 3 | 3 | B.1.201 | 0.017045 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 3 | 3 | B.1.258.17 | 0.000312 |
ORF1ab/nsp3 | 985 | P985A | Cct | Gct | 3 | 3 | B.1.311 | 0.000824 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 3 | 3 | B.1.509 | 0.002597 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 3 | 3 | B.1.564 | 0.001278 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 3 | 3 | B.1.565 | 0.002431 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 3 | 3 | B.1.609 | 0.001438 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 3 | 3 | B.1.628 | 0.001057 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 2 | 3 | D.2 | 0.00015 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccA | 1 | 3 | D.2 | 0.000075 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccA | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp3 | 985 | P985del1 | ccT | cc- | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccG | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 985 | P985del1 | ccT | cc- | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccA | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp3 | 985 | P985del1 | ccT | cc- | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 985 | P985H | cCt | cAt | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 985 | P985T | Cct | Act | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 985 | P985del1 | ccT | cc- | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp3 | 985 | P985H | cCt | cAt | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 2 | 2 | AY.41 | 0.000588 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp3 | 985 | P985H | cCt | cAt | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 2 | 2 | B.1.1.286 | 0.005797 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 2 | 2 | B.1.1.294 | 0.002532 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 2 | 2 | B.1.1.426 | 0.071429 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 2 | 2 | B.1.1.433 | 0.002849 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 985 | P985del1 | ccT | cc- | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 985 | P985H | cCt | cAt | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 2 | 2 | B.1.177.2 | 0.009091 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 2 | 2 | B.1.177.40 | 0.010309 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 2 | 2 | B.1.177.84 | 0.013333 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp3 | 985 | P985T | Cct | Act | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp3 | 985 | P985del | CCT | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 2 | 2 | B.1.36.31 | 0.003503 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 2 | 2 | B.1.378 | 0.013699 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 985 | P985del | CCT | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 2 | 2 | B.1.620 | 0.001892 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccA | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 2 | B.1.633 | 0.041667 |
ORF1ab/nsp3 | 985 | P985S | CcT | TcC | 1 | 2 | B.1.633 | 0.041667 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 2 | 2 | C.16 | 0.002121 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 985 | P985H | cCt | cAt | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | A.11 | 0.058824 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 985 | P985del | CCT | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 1 | 1 | A.2.3 | 0.004739 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 985 | P985Q | cCT | cAA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 1 | 1 | AU.2 | 0.002421 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 985 | P985R | cCt | cGt | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 985 | P985H | cCt | cAt | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccG | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 985 | P985del1 | ccT | cc- | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 985 | P985T | Cct | Act | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 985 | P985T | Cct | Act | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 985 | P985H | cCt | cAt | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 985 | P985del1 | ccT | cc- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 985 | P985del1 | ccT | cc- | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 985 | P985del1 | ccT | cc- | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 985 | P985H | cCt | cAt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 985 | P985T | Cct | Act | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 985 | P985A | Cct | Gct | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 985 | P985T | Cct | Act | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccG | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 985 | P985T | Cct | Act | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 985 | P985T | Cct | Act | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccG | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | AY.39.1.1 | 0.000725 |
ORF1ab/nsp3 | 985 | P985A | Cct | Gct | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccG | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 985 | P985H | cCt | cAt | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 985 | P985del | CCT | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 985 | P985del | CCT | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 985 | P985H | cCt | cAt | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 985 | P985R | cCt | cGt | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 985 | P985H | cCt | cAt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 985 | P985del1 | ccT | cc- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccG | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 985 | P985del | CCT | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 985 | P985del | CCT | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 985 | P985del1 | ccT | cc- | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp3 | 985 | P985T | Cct | Act | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 985 | P985T | Cct | Act | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 985 | P985del1 | ccT | cc- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 985 | P985del | CCT | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 985 | P985R | CCT | AGG | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 985 | P985T | Cct | Act | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 985 | P985H | cCt | cAt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 985 | P985del | CCT | --- | 1 | 1 | B.1.1.142 | 0.017544 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.1.255 | 0.00303 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.1.27 | 0.00565 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.1.297 | 0.002237 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.1.304 | 0.002809 |
ORF1ab/nsp3 | 985 | P985del | CCT | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.1.320 | 0.018182 |
ORF1ab/nsp3 | 985 | P985T | Cct | Act | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.1.349 | 0.010309 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 985 | P985del | CCT | --- | 1 | 1 | B.1.1.385 | 0.004464 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.1.406 | 0.006494 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.1.41 | 0.006329 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.1.419 | 0.007407 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.103 | 0.019231 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp3 | 985 | P985T | Cct | Act | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 985 | P985del | CCT | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccG | 1 | 1 | B.1.177.2 | 0.004545 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.177.34 | 0.052632 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp3 | 985 | P985H | cCt | cAt | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 985 | P985del | CCT | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.221.3 | 0.000833 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccG | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.248 | 0.029412 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 985 | P985H | cCt | cAt | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 985 | P985T | Cct | Act | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 1 | 1 | B.1.258.7 | 0.001912 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 985 | P985del | CCT | --- | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.335 | 0.010309 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.337 | 0.005587 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 1 | 1 | B.1.362.2 | 0.004717 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.401 | 0.008197 |
ORF1ab/nsp3 | 985 | P985del1 | ccT | cc- | 1 | 1 | B.1.401 | 0.008197 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.448 | 0.002625 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 1 | 1 | B.1.492 | 0.007042 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.495 | 0.009091 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.543 | 0.01 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 1 | 1 | B.1.547 | 0.02439 |
ORF1ab/nsp3 | 985 | P985H | cCt | cAt | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.554 | 0.004405 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp3 | 985 | P985del1 | ccT | cc- | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 1 | 1 | B.1.633 | 0.041667 |
ORF1ab/nsp3 | 985 | P985del1 | ccT | cc- | 1 | 1 | B.1.633 | 0.041667 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.635 | 0.017544 |
ORF1ab/nsp3 | 985 | P985H | cCt | cAt | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 985 | P985T | Cct | Act | 1 | 1 | B.1.70 | 0.02439 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.9 | 0.006173 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp3 | 985 | P985del | CCT | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 985 | P985T | Cct | Act | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 1 | 1 | B.61 | 0.005747 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 1 | 1 | C.23 | 0.005814 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | C.30 | 0.001727 |
ORF1ab/nsp3 | 985 | P985Q | cCT | cAA | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 985 | P985del | CCT | --- | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | K.3 | 0.006173 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 985 | P985S | Cct | Tct | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 985 | P985T | Cct | Act | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccG | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 985 | P985P | ccT | ccC | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 985 | P985L | cCt | cTt | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 985 | P985H | cCt | cAt | 1 | 1 | W.4 | 0.001351 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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