CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 985

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3985P985SP1803SnonsynCctTct516151590.9996125672-5674
ORF1ab/nsp3985P985SP1803SnonsynCcTTcC516120.0003875225672-5674
ORF1ab/nsp3985P985LP1803LnonsyncCtcTt130313020.9992335672-5674
ORF1ab/nsp3985P985LP1803LnonsyncCTcTC130310.000767465672-5674
ORF1ab/nsp3985P985TP1803TnonsynCctAct29429415672-5674
ORF1ab/nsp3985P985PP1803PsynccTccC2111780.8436025672-5674
ORF1ab/nsp3985P985PP1803PsynccTccG211200.09478675672-5674
ORF1ab/nsp3985P985PP1803PsynccTccA211130.06161145672-5674
ORF1ab/nsp3985P985HP1803HnonsyncCtcAt10310315672-5674
ORF1ab/nsp3985P985del1P1803del1delccTcc-434315672-5674
ORF1ab/nsp3985P985delP1803deldelCCT---292915672-5674
ORF1ab/nsp3985P985AP1803AnonsynCctGct9915672-5674
ORF1ab/nsp3985P985RP1803RnonsyncCtcGt650.8333335672-5674
ORF1ab/nsp3985P985RP1803RnonsynCCTAGG610.1666675672-5674
ORF1ab/nsp3985P985QP1803QnonsyncCTcAA1115672-5674

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3985P985SCctTct51595161All0.000987
ORF1ab/nsp3985P985SCcTTcC25161All0
ORF1ab/nsp3985P985LcCtcTt13021303All0.000249
ORF1ab/nsp3985P985LcCTcTC11303All0
ORF1ab/nsp3985P985SCctTct11271127B.1.1390.826246
ORF1ab/nsp3985P985SCctTct910910B.1.1.70.000815
ORF1ab/nsp3985P985LcCtcTt515515AY.40.000802
ORF1ab/nsp3985P985SCctTct473473AY.40.000736
ORF1ab/nsp3985P985SCctTct359359AY.930.098034
ORF1ab/nsp3985P985TCctAct294294All0.000056
ORF1ab/nsp3985P985PccTccC178211All0.000034
ORF1ab/nsp3985P985PccTccG20211All0.000004
ORF1ab/nsp3985P985PccTccA13211All0.000002
ORF1ab/nsp3985P985TCctAct211211B.1.1.70.000189
ORF1ab/nsp3985P985LcCtcTt172172R.10.015482
ORF1ab/nsp3985P985SCctTct127127B.1.617.20.000478
ORF1ab/nsp3985P985LcCtcTt110110B.1.1770.001448
ORF1ab/nsp3985P985HcCtcAt103103All0.00002
ORF1ab/nsp3985P985SCctTct9999AY.430.000439
ORF1ab/nsp3985P985SCctTct9898B.1.20.000863
ORF1ab/nsp3985P985SCctTct9797B.1.3750.079508
ORF1ab/nsp3985P985SCctTct8989B.1.36.360.053582
ORF1ab/nsp3985P985SCctTct8686P.10.001355
ORF1ab/nsp3985P985SCctTct8585B.10.000779
ORF1ab/nsp3985P985SCctTct8080B.1.5341
ORF1ab/nsp3985P985LcCtcTt6363B.1.617.20.000237
ORF1ab/nsp3985P985LcCtcTt5656B.1.3620.086287
ORF1ab/nsp3985P985SCctTct5455AY.1030.000335
ORF1ab/nsp3985P985SCcTTcC155AY.1030.000006
ORF1ab/nsp3985P985SCctTct5555AY.250.000331
ORF1ab/nsp3985P985SCctTct5555B.1.1600.001715
ORF1ab/nsp3985P985PccTccC5050B.1.160.100.403226
ORF1ab/nsp3985P985LcCtcTt4646B.1.1.70.000041
ORF1ab/nsp3985P985SCctTct4646U.10.589744
ORF1ab/nsp3985P985del1ccTcc-4343All0.000008
ORF1ab/nsp3985P985TCctAct4242AY.440.000256
ORF1ab/nsp3985P985LcCtcTt4040B.1.10.000726
ORF1ab/nsp3985P985SCctTct3737AY.1200.001376
ORF1ab/nsp3985P985SCctTct3737AY.46.60.002672
ORF1ab/nsp3985P985SCctTct3737B.1.3510.0011
ORF1ab/nsp3985P985SCctTct3636AY.290.000568
ORF1ab/nsp3985P985SCctTct3636B.1.10.000653
ORF1ab/nsp3985P985SCctTct3636B.1.1.390.018349
ORF1ab/nsp3985P985HcCtcAt3535AY.40.000054
ORF1ab/nsp3985P985SCctTct3535AY.440.000213
ORF1ab/nsp3985P985SCctTct3333B.1.4290.000776
ORF1ab/nsp3985P985SCctTct3232AY.4.20.000694
ORF1ab/nsp3985P985SCctTct3030AY.4.50.003225
ORF1ab/nsp3985P985SCctTct3030B.1.1770.000395
ORF1ab/nsp3985P985SCctTct3030P.20.005599
ORF1ab/nsp3985P985delCCT---2929All0.000006
ORF1ab/nsp3985P985SCctTct2727AY.30.000269
ORF1ab/nsp3985P985SCctTct2727B.1.2430.001879
ORF1ab/nsp3985P985SCctTct2626C.370.003018
ORF1ab/nsp3985P985SCctTct2525B.1.1.2140.001386
ORF1ab/nsp3985P985LcCtcTt2324AY.440.00014
ORF1ab/nsp3985P985LcCTcTC124AY.440.000006
ORF1ab/nsp3985P985SCctTct2323B.1.1.3180.00694
ORF1ab/nsp3985P985SCctTct2222AY.330.001469
ORF1ab/nsp3985P985PccTccC1422B.1.1.70.000013
ORF1ab/nsp3985P985PccTccG622B.1.1.70.000005
ORF1ab/nsp3985P985PccTccA222B.1.1.70.000002
ORF1ab/nsp3985P985LcCtcTt2222B.1.20.000194
ORF1ab/nsp3985P985SCctTct2222B.1.351.50.013189
ORF1ab/nsp3985P985LcCtcTt2121AY.1030.00013
ORF1ab/nsp3985P985SCctTct2121AY.200.000816
ORF1ab/nsp3985P985SCctTct2121B.1.1.5190.000834
ORF1ab/nsp3985P985SCctTct2121B.1.6210.001859
ORF1ab/nsp3985P985SCctTct2020AY.260.000566
ORF1ab/nsp3985P985SCctTct2020B.1.177.570.00562
ORF1ab/nsp3985P985SCctTct1919AY.1180.00119
ORF1ab/nsp3985P985SCctTct1919B.1.5260.000447
ORF1ab/nsp3985P985PccTccC1818B.10.000165
ORF1ab/nsp3985P985SCctTct1818B.1.5740.03871
ORF1ab/nsp3985P985LcCtcTt1717AY.430.000075
ORF1ab/nsp3985P985SCctTct1717B.1.438.10.001823
ORF1ab/nsp3985P985SCctTct1616B.1.177.600.003495
ORF1ab/nsp3985P985LcCtcTt1515B.1.5960.001307
ORF1ab/nsp3985P985SCctTct1414AY.1020.000371
ORF1ab/nsp3985P985PccTccC1414AY.1030.000087
ORF1ab/nsp3985P985SCctTct1414B.1.2210.000994
ORF1ab/nsp3985P985SCctTct1313AY.230.000907
ORF1ab/nsp3985P985SCctTct1313AY.390.000321
ORF1ab/nsp3985P985PccTccC1313AY.440.000079
ORF1ab/nsp3985P985SCctTct1313B.1.6370.00095
ORF1ab/nsp3985P985SCctTct1212A.2.5.20.018868
ORF1ab/nsp3985P985SCctTct1212AY.1000.000552
ORF1ab/nsp3985P985SCctTct1212B.1.3690.003423
ORF1ab/nsp3985P985LcCtcTt1212P.1.150.002788
ORF1ab/nsp3985P985delCCT---1111B.1.1.70.00001
ORF1ab/nsp3985P985SCctTct1111B.1.36.80.011
ORF1ab/nsp3985P985LcCtcTt1111B.1.5170.004697
ORF1ab/nsp3985P985PccTccC1011B.1.617.20.000038
ORF1ab/nsp3985P985PccTccA111B.1.617.20.000004
ORF1ab/nsp3985P985LcCtcTt1111P.10.000173
ORF1ab/nsp3985P985LcCtcTt1010AY.1200.000372
ORF1ab/nsp3985P985LcCtcTt1010AY.250.00006
ORF1ab/nsp3985P985LcCtcTt1010AY.30.000099
ORF1ab/nsp3985P985SCctTct1010AY.4.2.10.00149
ORF1ab/nsp3985P985del1ccTcc-1010AY.440.000061
ORF1ab/nsp3985P985SCctTct1010B.1.2580.000665
ORF1ab/nsp3985P985SCctTct1010P.1.140.000478
ORF1ab/nsp3985P985ACctGct99All0.000002
ORF1ab/nsp3985P985SCctTct99AY.420.000362
ORF1ab/nsp3985P985SCctTct99B.1.177.540.005458
ORF1ab/nsp3985P985SCctTct99B.1.177.810.001704
ORF1ab/nsp3985P985del1ccTcc-99B.1.20.000079
ORF1ab/nsp3985P985HcCtcAt99P.10.000142
ORF1ab/nsp3985P985LcCtcTt88AY.1190.000282
ORF1ab/nsp3985P985TCctAct88AY.40.000012
ORF1ab/nsp3985P985PccTccC78AY.430.000031
ORF1ab/nsp3985P985PccTccA18AY.430.000004
ORF1ab/nsp3985P985SCctTct88AY.450.000973
ORF1ab/nsp3985P985SCctTct88AY.50.000165
ORF1ab/nsp3985P985SCctTct88AY.60.000329
ORF1ab/nsp3985P985SCctTct88B.1.1.500.005431
ORF1ab/nsp3985P985HcCtcAt88B.1.1.70.000007
ORF1ab/nsp3985P985LcCtcTt77AY.1020.000186
ORF1ab/nsp3985P985SCctTct77AY.46.40.001152
ORF1ab/nsp3985P985LcCtcTt77B.10.000064
ORF1ab/nsp3985P985SCctTct77B.1.1.3060.003069
ORF1ab/nsp3985P985LcCtcTt77B.1.5260.000165
ORF1ab/nsp3985P985SCctTct77P.1.170.001132
ORF1ab/nsp3985P985SCctTct77R.10.00063
ORF1ab/nsp3985P985RcCtcGt56All0.000001
ORF1ab/nsp3985P985RCCTAGG16All0
ORF1ab/nsp3985P985SCctTct66AY.1190.000212
ORF1ab/nsp3985P985SCctTct66AY.540.000572
ORF1ab/nsp3985P985SCctTct66AY.90.000406
ORF1ab/nsp3985P985PccTccC46B.1.10.000073
ORF1ab/nsp3985P985PccTccA16B.1.10.000018
ORF1ab/nsp3985P985PccTccG16B.1.10.000018
ORF1ab/nsp3985P985PccTccC56B.1.3510.000149
ORF1ab/nsp3985P985PccTccA16B.1.3510.00003
ORF1ab/nsp3985P985SCctTct66B.1.416.10.009375
ORF1ab/nsp3985P985SCctTct66B.1.4270.000303
ORF1ab/nsp3985P985SCctTct66B.1.4280.006122
ORF1ab/nsp3985P985SCctTct66B.1.575.10.014634
ORF1ab/nsp3985P985SCctTct66B.1.5950.001566
ORF1ab/nsp3985P985HcCtcAt66B.1.617.20.000023
ORF1ab/nsp3985P985TCctAct55AY.1030.000031
ORF1ab/nsp3985P985SCctTct55AY.140.00044
ORF1ab/nsp3985P985LcCtcTt55AY.390.000124
ORF1ab/nsp3985P985LcCtcTt55AY.4.40.002046
ORF1ab/nsp3985P985SCctTct55AY.740.000578
ORF1ab/nsp3985P985SCctTct55AY.750.00028
ORF1ab/nsp3985P985SCctTct55AY.99.20.000461
ORF1ab/nsp3985P985PccTccC55B.1.1600.000156
ORF1ab/nsp3985P985SCctTct55B.1.36.290.002587
ORF1ab/nsp3985P985LcCtcTt55B.1.4290.000118
ORF1ab/nsp3985P985HcCtcAt55B.1.5250.000566
ORF1ab/nsp3985P985SCctTct55B.1.5750.001517
ORF1ab/nsp3985P985SCctTct55B.1.617.10.000645
ORF1ab/nsp3985P985TCctAct55B.1.617.20.000019
ORF1ab/nsp3985P985SCctTct55Q.80.000825
ORF1ab/nsp3985P985LcCtcTt44AY.1160.001147
ORF1ab/nsp3985P985HcCtcAt44AY.250.000024
ORF1ab/nsp3985P985HcCtcAt44AY.430.000018
ORF1ab/nsp3985P985LcCtcTt44AY.46.40.000658
ORF1ab/nsp3985P985HcCtcAt44AY.750.000224
ORF1ab/nsp3985P985SCctTct44AY.880.003537
ORF1ab/nsp3985P985SCctTct44AY.9.10.000335
ORF1ab/nsp3985P985LcCtcTt44AY.980.000316
ORF1ab/nsp3985P985TCctAct44B.10.000037
ORF1ab/nsp3985P985SCctTct44B.1.1.2160.003562
ORF1ab/nsp3985P985ACctGct44B.1.1.70.000004
ORF1ab/nsp3985P985SCctTct44B.1.1690.059701
ORF1ab/nsp3985P985LcCtcTt44B.1.2400.000862
ORF1ab/nsp3985P985LcCtcTt44B.1.4050.049383
ORF1ab/nsp3985P985del1ccTcc-44B.1.617.20.000015
ORF1ab/nsp3985P985SCctTct44B.1.621.10.002023
ORF1ab/nsp3985P985SCctTct44Q.10.000505
ORF1ab/nsp3985P985SCctTct33AY.10.001187
ORF1ab/nsp3985P985LcCtcTt33AY.1000.000138
ORF1ab/nsp3985P985SCctTct33AY.1090.002219
ORF1ab/nsp3985P985SCctTct33AY.270.000194
ORF1ab/nsp3985P985SCctTct33AY.340.000291
ORF1ab/nsp3985P985PccTccC23AY.40.000003
ORF1ab/nsp3985P985PccTccG13AY.40.000002
ORF1ab/nsp3985P985LcCtcTt33AY.4.20.000065
ORF1ab/nsp3985P985HcCtcAt33AY.440.000018
ORF1ab/nsp3985P985PccTccG23AY.50.000041
ORF1ab/nsp3985P985PccTccC13AY.50.000021
ORF1ab/nsp3985P985SCctTct33B0.000383
ORF1ab/nsp3985P985SCctTct33B.1.1.1690.054545
ORF1ab/nsp3985P985LcCtcTt33B.1.1.2160.002671
ORF1ab/nsp3985P985SCctTct33B.1.1.2220.000612
ORF1ab/nsp3985P985RcCtcGt33B.1.1.70.000003
ORF1ab/nsp3985P985SCctTct33B.1.1.700.001023
ORF1ab/nsp3985P985HcCtcAt33B.1.1770.00004
ORF1ab/nsp3985P985SCctTct33B.1.177.520.005272
ORF1ab/nsp3985P985SCctTct33B.1.2010.017045
ORF1ab/nsp3985P985SCctTct33B.1.2340.000396
ORF1ab/nsp3985P985SCctTct33B.1.258.170.000312
ORF1ab/nsp3985P985ACctGct33B.1.3110.000824
ORF1ab/nsp3985P985SCctTct33B.1.5090.002597
ORF1ab/nsp3985P985SCctTct33B.1.5640.001278
ORF1ab/nsp3985P985SCctTct33B.1.5650.002431
ORF1ab/nsp3985P985SCctTct33B.1.6090.001438
ORF1ab/nsp3985P985SCctTct33B.1.6280.001057
ORF1ab/nsp3985P985PccTccC23D.20.00015
ORF1ab/nsp3985P985PccTccA13D.20.000075
ORF1ab/nsp3985P985PccTccA22AY.1000.000092
ORF1ab/nsp3985P985del1ccTcc-22AY.1030.000012
ORF1ab/nsp3985P985LcCtcTt22AY.1110.000366
ORF1ab/nsp3985P985PccTccG22AY.1190.000071
ORF1ab/nsp3985P985del1ccTcc-22AY.120.10.000642
ORF1ab/nsp3985P985SCctTct22AY.130.000322
ORF1ab/nsp3985P985LcCtcTt22AY.140.000176
ORF1ab/nsp3985P985PccTccA22AY.200.000078
ORF1ab/nsp3985P985del1ccTcc-22AY.260.000057
ORF1ab/nsp3985P985HcCtcAt22AY.30.00002
ORF1ab/nsp3985P985TCctAct22AY.30.00002
ORF1ab/nsp3985P985del1ccTcc-22AY.30.00002
ORF1ab/nsp3985P985SCctTct22AY.34.10.00102
ORF1ab/nsp3985P985SCctTct22AY.360.000296
ORF1ab/nsp3985P985SCctTct22AY.380.000999
ORF1ab/nsp3985P985HcCtcAt22AY.390.000049
ORF1ab/nsp3985P985SCctTct22AY.39.10.000079
ORF1ab/nsp3985P985SCctTct22AY.410.000588
ORF1ab/nsp3985P985SCctTct22AY.46.50.000397
ORF1ab/nsp3985P985HcCtcAt22AY.650.001066
ORF1ab/nsp3985P985SCctTct22AY.9.20.000073
ORF1ab/nsp3985P985SCctTct22B.1.1.10.000653
ORF1ab/nsp3985P985SCctTct22B.1.1.2860.005797
ORF1ab/nsp3985P985SCctTct22B.1.1.2940.002532
ORF1ab/nsp3985P985SCctTct22B.1.1.3170.000823
ORF1ab/nsp3985P985SCctTct22B.1.1.330.000842
ORF1ab/nsp3985P985LcCtcTt22B.1.1.4260.071429
ORF1ab/nsp3985P985SCctTct22B.1.1.4330.002849
ORF1ab/nsp3985P985LcCtcTt22B.1.1.4340.000697
ORF1ab/nsp3985P985LcCtcTt22B.1.1.5190.000079
ORF1ab/nsp3985P985del1ccTcc-22B.1.1.70.000002
ORF1ab/nsp3985P985HcCtcAt22B.1.1600.000062
ORF1ab/nsp3985P985LcCtcTt22B.1.1600.000062
ORF1ab/nsp3985P985SCctTct22B.1.177.120.000303
ORF1ab/nsp3985P985SCctTct22B.1.177.20.009091
ORF1ab/nsp3985P985SCctTct22B.1.177.210.000153
ORF1ab/nsp3985P985SCctTct22B.1.177.400.010309
ORF1ab/nsp3985P985LcCtcTt22B.1.177.70.00033
ORF1ab/nsp3985P985SCctTct22B.1.177.840.013333
ORF1ab/nsp3985P985SCctTct22B.1.177.860.000367
ORF1ab/nsp3985P985TCctAct22B.1.20.000018
ORF1ab/nsp3985P985LcCtcTt22B.1.3110.000549
ORF1ab/nsp3985P985delCCT---22B.1.360.000292
ORF1ab/nsp3985P985SCctTct22B.1.36.310.003503
ORF1ab/nsp3985P985LcCtcTt22B.1.3690.00057
ORF1ab/nsp3985P985SCctTct22B.1.3780.013699
ORF1ab/nsp3985P985SCctTct22B.1.4000.000858
ORF1ab/nsp3985P985LcCtcTt22B.1.4270.000101
ORF1ab/nsp3985P985SCctTct22B.1.466.20.000782
ORF1ab/nsp3985P985SCctTct22B.1.5170.000854
ORF1ab/nsp3985P985LcCtcTt22B.1.5250.000226
ORF1ab/nsp3985P985SCctTct22B.1.5820.000981
ORF1ab/nsp3985P985SCctTct22B.1.5960.000174
ORF1ab/nsp3985P985delCCT---22B.1.617.20.000008
ORF1ab/nsp3985P985SCctTct22B.1.6200.001892
ORF1ab/nsp3985P985PccTccA22B.1.6210.000177
ORF1ab/nsp3985P985LcCtcTt22B.1.6210.000177
ORF1ab/nsp3985P985SCctTct22B.1.6230.001073
ORF1ab/nsp3985P985SCctTct12B.1.6330.041667
ORF1ab/nsp3985P985SCcTTcC12B.1.6330.041667
ORF1ab/nsp3985P985SCctTct22C.160.002121
ORF1ab/nsp3985P985SCctTct22D.20.00015
ORF1ab/nsp3985P985HcCtcAt22P.1.140.000096
ORF1ab/nsp3985P985SCctTct22Q.30.00029
ORF1ab/nsp3985P985LcCtcTt11A0.000387
ORF1ab/nsp3985P985SCctTct11A0.000387
ORF1ab/nsp3985P985PccTccC11A0.000387
ORF1ab/nsp3985P985SCctTct11A.10.000282
ORF1ab/nsp3985P985SCctTct11A.110.058824
ORF1ab/nsp3985P985PccTccC11A.2.20.001689
ORF1ab/nsp3985P985delCCT---11A.2.20.001689
ORF1ab/nsp3985P985LcCtcTt11A.2.30.004739
ORF1ab/nsp3985P985LcCtcTt11A.2.50.000499
ORF1ab/nsp3985P985SCctTct11A.2.50.000499
ORF1ab/nsp3985P985SCctTct11A.23.10.000704
ORF1ab/nsp3985P985SCctTct11AD.20.000219
ORF1ab/nsp3985P985QcCTcAA11All0
ORF1ab/nsp3985P985LcCtcTt11AT.10.005128
ORF1ab/nsp3985P985PccTccC11AU.20.002421
ORF1ab/nsp3985P985LcCtcTt11AY.100.00053
ORF1ab/nsp3985P985LcCtcTt11AY.1010.00049
ORF1ab/nsp3985P985RcCtcGt11AY.1020.000027
ORF1ab/nsp3985P985HcCtcAt11AY.1020.000027
ORF1ab/nsp3985P985PccTccC11AY.1080.001103
ORF1ab/nsp3985P985SCctTct11AY.1100.000113
ORF1ab/nsp3985P985PccTccG11AY.1100.000113
ORF1ab/nsp3985P985del1ccTcc-11AY.1130.000142
ORF1ab/nsp3985P985TCctAct11AY.1130.000142
ORF1ab/nsp3985P985LcCtcTt11AY.1140.000231
ORF1ab/nsp3985P985TCctAct11AY.1170.000085
ORF1ab/nsp3985P985SCctTct11AY.1170.000085
ORF1ab/nsp3985P985HcCtcAt11AY.1170.000085
ORF1ab/nsp3985P985del1ccTcc-11AY.1200.000037
ORF1ab/nsp3985P985PccTccC11AY.1210.000135
ORF1ab/nsp3985P985LcCtcTt11AY.1210.000135
ORF1ab/nsp3985P985PccTccC11AY.16.10.00047
ORF1ab/nsp3985P985del1ccTcc-11AY.20.000356
ORF1ab/nsp3985P985LcCtcTt11AY.200.000039
ORF1ab/nsp3985P985del1ccTcc-11AY.200.000039
ORF1ab/nsp3985P985LcCtcTt11AY.230.00007
ORF1ab/nsp3985P985HcCtcAt11AY.230.00007
ORF1ab/nsp3985P985SCctTct11AY.240.000431
ORF1ab/nsp3985P985TCctAct11AY.240.000431
ORF1ab/nsp3985P985ACctGct11AY.250.000006
ORF1ab/nsp3985P985PccTccC11AY.250.000006
ORF1ab/nsp3985P985TCctAct11AY.260.000028
ORF1ab/nsp3985P985PccTccG11AY.290.000016
ORF1ab/nsp3985P985PccTccC11AY.30.00001
ORF1ab/nsp3985P985LcCtcTt11AY.3.10.000085
ORF1ab/nsp3985P985TCctAct11AY.3.10.000085
ORF1ab/nsp3985P985SCctTct11AY.3.10.000085
ORF1ab/nsp3985P985SCctTct11AY.320.000532
ORF1ab/nsp3985P985PccTccC11AY.320.000532
ORF1ab/nsp3985P985LcCtcTt11AY.340.000097
ORF1ab/nsp3985P985LcCtcTt11AY.360.000148
ORF1ab/nsp3985P985TCctAct11AY.390.000025
ORF1ab/nsp3985P985PccTccG11AY.39.10.00004
ORF1ab/nsp3985P985LcCtcTt11AY.39.10.00004
ORF1ab/nsp3985P985SCctTct11AY.39.1.10.000725
ORF1ab/nsp3985P985ACctGct11AY.40.000002
ORF1ab/nsp3985P985PccTccG11AY.4.20.000022
ORF1ab/nsp3985P985HcCtcAt11AY.4.20.000022
ORF1ab/nsp3985P985LcCtcTt11AY.420.00004
ORF1ab/nsp3985P985PccTccC11AY.420.00004
ORF1ab/nsp3985P985delCCT---11AY.430.000004
ORF1ab/nsp3985P985delCCT---11AY.460.000104
ORF1ab/nsp3985P985HcCtcAt11AY.470.000031
ORF1ab/nsp3985P985SCctTct11AY.470.000031
ORF1ab/nsp3985P985LcCtcTt11AY.50.000021
ORF1ab/nsp3985P985SCctTct11AY.5.30.000337
ORF1ab/nsp3985P985PccTccC11AY.5.30.000337
ORF1ab/nsp3985P985RcCtcGt11AY.520.000814
ORF1ab/nsp3985P985HcCtcAt11AY.60.000041
ORF1ab/nsp3985P985PccTccC11AY.60.000041
ORF1ab/nsp3985P985SCctTct11AY.610.000105
ORF1ab/nsp3985P985LcCtcTt11AY.610.000105
ORF1ab/nsp3985P985SCctTct11AY.630.000387
ORF1ab/nsp3985P985SCctTct11AY.660.00107
ORF1ab/nsp3985P985del1ccTcc-11AY.670.000464
ORF1ab/nsp3985P985SCctTct11AY.680.000274
ORF1ab/nsp3985P985PccTccG11AY.690.000187
ORF1ab/nsp3985P985SCctTct11AY.7.10.000113
ORF1ab/nsp3985P985SCctTct11AY.700.000209
ORF1ab/nsp3985P985LcCtcTt11AY.700.000209
ORF1ab/nsp3985P985delCCT---11AY.750.000056
ORF1ab/nsp3985P985delCCT---11AY.75.10.00018
ORF1ab/nsp3985P985SCctTct11AY.870.000833
ORF1ab/nsp3985P985PccTccC11AY.9.10.000084
ORF1ab/nsp3985P985SCctTct11AY.900.000684
ORF1ab/nsp3985P985SCctTct11AY.920.000287
ORF1ab/nsp3985P985LcCtcTt11AY.930.000273
ORF1ab/nsp3985P985del1ccTcc-11AY.980.000079
ORF1ab/nsp3985P985SCctTct11AY.99.10.001553
ORF1ab/nsp3985P985TCctAct11AY.99.20.000092
ORF1ab/nsp3985P985TCctAct11AZ.20.000821
ORF1ab/nsp3985P985SCctTct11AZ.20.000821
ORF1ab/nsp3985P985PccTccC11B0.000128
ORF1ab/nsp3985P985LcCtcTt11B0.000128
ORF1ab/nsp3985P985del1ccTcc-11B.10.000009
ORF1ab/nsp3985P985delCCT---11B.10.000009
ORF1ab/nsp3985P985RCCTAGG11B.10.000009
ORF1ab/nsp3985P985TCctAct11B.1.10.000018
ORF1ab/nsp3985P985HcCtcAt11B.1.10.000018
ORF1ab/nsp3985P985delCCT---11B.1.1.1420.017544
ORF1ab/nsp3985P985SCctTct11B.1.1.1570.000913
ORF1ab/nsp3985P985LcCtcTt11B.1.1.1610.003534
ORF1ab/nsp3985P985PccTccC11B.1.1.1610.003534
ORF1ab/nsp3985P985PccTccC11B.1.1.1920.002309
ORF1ab/nsp3985P985SCctTct11B.1.1.1980.001468
ORF1ab/nsp3985P985LcCtcTt11B.1.1.250.000569
ORF1ab/nsp3985P985SCctTct11B.1.1.2550.00303
ORF1ab/nsp3985P985LcCtcTt11B.1.1.2630.001558
ORF1ab/nsp3985P985SCctTct11B.1.1.270.00565
ORF1ab/nsp3985P985PccTccC11B.1.1.280.000311
ORF1ab/nsp3985P985LcCtcTt11B.1.1.2840.000107
ORF1ab/nsp3985P985SCctTct11B.1.1.2970.002237
ORF1ab/nsp3985P985SCctTct11B.1.1.3040.002809
ORF1ab/nsp3985P985delCCT---11B.1.1.3150.008475
ORF1ab/nsp3985P985LcCtcTt11B.1.1.3170.000412
ORF1ab/nsp3985P985SCctTct11B.1.1.3200.018182
ORF1ab/nsp3985P985TCctAct11B.1.1.3260.001761
ORF1ab/nsp3985P985LcCtcTt11B.1.1.330.000421
ORF1ab/nsp3985P985SCctTct11B.1.1.3490.010309
ORF1ab/nsp3985P985PccTccC11B.1.1.3690.000446
ORF1ab/nsp3985P985SCctTct11B.1.1.370.000193
ORF1ab/nsp3985P985delCCT---11B.1.1.3850.004464
ORF1ab/nsp3985P985SCctTct11B.1.1.3970.002252
ORF1ab/nsp3985P985SCctTct11B.1.1.4060.006494
ORF1ab/nsp3985P985SCctTct11B.1.1.410.006329
ORF1ab/nsp3985P985SCctTct11B.1.1.4190.007407
ORF1ab/nsp3985P985SCctTct11B.1.1.4640.001473
ORF1ab/nsp3985P985SCctTct11B.1.1.510.001718
ORF1ab/nsp3985P985PccTccC11B.1.1.5190.00004
ORF1ab/nsp3985P985SCctTct11B.1.1.5230.001563
ORF1ab/nsp3985P985SCctTct11B.1.1030.019231
ORF1ab/nsp3985P985SCctTct11B.1.110.30.000718
ORF1ab/nsp3985P985SCctTct11B.1.1110.001175
ORF1ab/nsp3985P985SCctTct11B.1.1260.001276
ORF1ab/nsp3985P985SCctTct11B.1.1470.000756
ORF1ab/nsp3985P985TCctAct11B.1.1770.000013
ORF1ab/nsp3985P985delCCT---11B.1.1770.000013
ORF1ab/nsp3985P985PccTccC11B.1.1770.000013
ORF1ab/nsp3985P985SCctTct11B.1.177.100.000878
ORF1ab/nsp3985P985SCctTct11B.1.177.150.000631
ORF1ab/nsp3985P985SCctTct11B.1.177.160.000664
ORF1ab/nsp3985P985PccTccG11B.1.177.20.004545
ORF1ab/nsp3985P985SCctTct11B.1.177.320.00135
ORF1ab/nsp3985P985SCctTct11B.1.177.340.052632
ORF1ab/nsp3985P985LcCtcTt11B.1.177.570.000281
ORF1ab/nsp3985P985SCctTct11B.1.177.580.001332
ORF1ab/nsp3985P985SCctTct11B.1.177.650.000665
ORF1ab/nsp3985P985LcCtcTt11B.1.177.730.000566
ORF1ab/nsp3985P985SCctTct11B.1.177.730.000566
ORF1ab/nsp3985P985SCctTct11B.1.177.750.001041
ORF1ab/nsp3985P985HcCtcAt11B.1.177.860.000183
ORF1ab/nsp3985P985SCctTct11B.1.2060.000816
ORF1ab/nsp3985P985PccTccC11B.1.2210.000071
ORF1ab/nsp3985P985delCCT---11B.1.2210.000071
ORF1ab/nsp3985P985SCctTct11B.1.221.30.000833
ORF1ab/nsp3985P985SCctTct11B.1.2360.002053
ORF1ab/nsp3985P985PccTccC11B.1.2390.001221
ORF1ab/nsp3985P985SCctTct11B.1.2400.000216
ORF1ab/nsp3985P985PccTccG11B.1.2430.00007
ORF1ab/nsp3985P985SCctTct11B.1.2480.029412
ORF1ab/nsp3985P985LcCtcTt11B.1.2580.000067
ORF1ab/nsp3985P985HcCtcAt11B.1.2580.000067
ORF1ab/nsp3985P985PccTccC11B.1.2580.000067
ORF1ab/nsp3985P985TCctAct11B.1.2580.000067
ORF1ab/nsp3985P985LcCtcTt11B.1.258.70.001912
ORF1ab/nsp3985P985SCctTct11B.1.2600.003344
ORF1ab/nsp3985P985PccTccC11B.1.3110.000275
ORF1ab/nsp3985P985SCctTct11B.1.3110.000275
ORF1ab/nsp3985P985delCCT---11B.1.3190.003049
ORF1ab/nsp3985P985SCctTct11B.1.3290.000608
ORF1ab/nsp3985P985SCctTct11B.1.3350.010309
ORF1ab/nsp3985P985SCctTct11B.1.3370.005587
ORF1ab/nsp3985P985PccTccC11B.1.3400.004292
ORF1ab/nsp3985P985LcCtcTt11B.1.3510.00003
ORF1ab/nsp3985P985SCctTct11B.1.360.000146
ORF1ab/nsp3985P985SCctTct11B.1.36.10.00114
ORF1ab/nsp3985P985PccTccC11B.1.36.10.00114
ORF1ab/nsp3985P985LcCtcTt11B.1.36.180.00042
ORF1ab/nsp3985P985PccTccC11B.1.362.20.004717
ORF1ab/nsp3985P985SCctTct11B.1.3990.001934
ORF1ab/nsp3985P985SCctTct11B.1.4010.008197
ORF1ab/nsp3985P985del1ccTcc-11B.1.4010.008197
ORF1ab/nsp3985P985SCctTct11B.1.4040.001302
ORF1ab/nsp3985P985LcCtcTt11B.1.4110.003704
ORF1ab/nsp3985P985PccTccC11B.1.4160.001269
ORF1ab/nsp3985P985SCctTct11B.1.4480.002625
ORF1ab/nsp3985P985PccTccC11B.1.4920.007042
ORF1ab/nsp3985P985SCctTct11B.1.4950.009091
ORF1ab/nsp3985P985SCctTct11B.1.4970.000315
ORF1ab/nsp3985P985SCctTct11B.1.5240.001406
ORF1ab/nsp3985P985SCctTct11B.1.5250.000113
ORF1ab/nsp3985P985PccTccC11B.1.5260.000024
ORF1ab/nsp3985P985SCctTct11B.1.5430.01
ORF1ab/nsp3985P985LcCtcTt11B.1.5470.02439
ORF1ab/nsp3985P985HcCtcAt11B.1.5510.00129
ORF1ab/nsp3985P985SCctTct11B.1.5540.004405
ORF1ab/nsp3985P985LcCtcTt11B.1.5600.00463
ORF1ab/nsp3985P985SCctTct11B.1.5800.004065
ORF1ab/nsp3985P985del1ccTcc-11B.1.5960.000087
ORF1ab/nsp3985P985LcCtcTt11B.1.6090.000479
ORF1ab/nsp3985P985LcCtcTt11B.1.621.10.000506
ORF1ab/nsp3985P985LcCtcTt11B.1.6280.000352
ORF1ab/nsp3985P985PccTccC11B.1.6330.041667
ORF1ab/nsp3985P985del1ccTcc-11B.1.6330.041667
ORF1ab/nsp3985P985SCctTct11B.1.6350.017544
ORF1ab/nsp3985P985HcCtcAt11B.1.6370.000073
ORF1ab/nsp3985P985TCctAct11B.1.700.02439
ORF1ab/nsp3985P985SCctTct11B.1.90.006173
ORF1ab/nsp3985P985SCctTct11B.1.930.000934
ORF1ab/nsp3985P985delCCT---11B.150.017544
ORF1ab/nsp3985P985SCctTct11B.30.000831
ORF1ab/nsp3985P985SCctTct11B.60.00091
ORF1ab/nsp3985P985TCctAct11B.6.60.000889
ORF1ab/nsp3985P985PccTccC11B.610.005747
ORF1ab/nsp3985P985LcCtcTt11C.230.005814
ORF1ab/nsp3985P985SCctTct11C.300.001727
ORF1ab/nsp3985P985QcCTcAA11C.350.000774
ORF1ab/nsp3985P985SCctTct11C.360.000911
ORF1ab/nsp3985P985delCCT---11C.370.000116
ORF1ab/nsp3985P985SCctTct11K.30.006173
ORF1ab/nsp3985P985LcCtcTt11P.1.140.000048
ORF1ab/nsp3985P985SCctTct11P.1.150.000232
ORF1ab/nsp3985P985TCctAct11P.1.150.000232
ORF1ab/nsp3985P985PccTccG11P.1.170.000162
ORF1ab/nsp3985P985PccTccC11P.20.000187
ORF1ab/nsp3985P985LcCtcTt11Q.80.000165
ORF1ab/nsp3985P985HcCtcAt11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.