CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 98 & Codon = Ctg

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp398L98LL916LsynTtgCtg16619190.5532813011-3013

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp398L98LTtgCtg9191661All0.000176
ORF1ab/nsp398L98LTtgCtg754754B.1.1260.961735
ORF1ab/nsp398L98LTtgCtg6297B.1.1.70.000005
ORF1ab/nsp398L98LTtgCtg9294B.10.000843
ORF1ab/nsp398L98LTtgCtg184AY.250.000006
ORF1ab/nsp398L98LTtgCtg549AY.40.000008
ORF1ab/nsp398L98LTtgCtg1515AY.9.20.000551
ORF1ab/nsp398L98LTtgCtg514P.10.000079
ORF1ab/nsp398L98LTtgCtg411AY.30.00004
ORF1ab/nsp398L98LTtgCtg19B.1.617.20.000004
ORF1ab/nsp398L98LTtgCtg17AY.120.10.000321
ORF1ab/nsp398L98LTtgCtg16AY.1030.000006
ORF1ab/nsp398L98LTtgCtg36B.1.20.000026
ORF1ab/nsp398L98LTtgCtg66B.1.2100.012793
ORF1ab/nsp398L98LTtgCtg66B.1.3750.004918
ORF1ab/nsp398L98LTtgCtg23AY.90.000135
ORF1ab/nsp398L98LTtgCtg22AY.230.000139
ORF1ab/nsp398L98LTtgCtg12AY.29.10.000221
ORF1ab/nsp398L98LTtgCtg12AY.99.20.000092
ORF1ab/nsp398L98LTtgCtg22B.1.5960.000174
ORF1ab/nsp398L98LTtgCtg12P.1.140.000048
ORF1ab/nsp398L98LTtgCtg11AY.1130.000142
ORF1ab/nsp398L98LTtgCtg11AY.120.000316
ORF1ab/nsp398L98LTtgCtg11AY.200.000039
ORF1ab/nsp398L98LTtgCtg11AY.5.40.000277
ORF1ab/nsp398L98LTtgCtg11AY.690.000187
ORF1ab/nsp398L98LTtgCtg11B.1.1.390.00051
ORF1ab/nsp398L98LTtgCtg11B.1.2210.000071
ORF1ab/nsp398L98LTtgCtg11B.1.2340.000132
ORF1ab/nsp398L98LTtgCtg11B.1.4450.011765
ORF1ab/nsp398L98LTtgCtg11B.1.5820.000491

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.