CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 979

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3979L979LL1797LsynCtaTta596859160.9912875654-5656
ORF1ab/nsp3979L979LL1797LsynctActG5968440.007372655654-5656
ORF1ab/nsp3979L979LL1797LsynctActT596870.001172925654-5656
ORF1ab/nsp3979L979LL1797LsynctActC596810.000167565654-5656
ORF1ab/nsp3979L979delL1797deldelCTA---303015654-5656
ORF1ab/nsp3979L979IL1797InonsynCtaAta272715654-5656
ORF1ab/nsp3979L979PL1797PnonsyncTacCa111115654-5656
ORF1ab/nsp3979L979VL1797VnonsynCtaGta870.8755654-5656
ORF1ab/nsp3979L979VL1797VnonsynCtAGtG810.1255654-5656
ORF1ab/nsp3979L979RL1797RnonsyncTacGa3315654-5656
ORF1ab/nsp3979L979del1L1797del1delCta-ta2215654-5656
ORF1ab/nsp3979L979del2L1797del2delcTAc--1115654-5656
ORF1ab/nsp3979L979QL1797QnonsyncTacAa1115654-5656
ORF1ab/nsp3979L979SL1797SnonsynCTaTCa1115654-5656
ORF1ab/nsp3979L979XL1797XnonsynCTaTGa1115654-5656

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3979L979LCtaTta59165968All0.001132
ORF1ab/nsp3979L979LctActG445968All0.000008
ORF1ab/nsp3979L979LctActT75968All0.000001
ORF1ab/nsp3979L979LctActC15968All0
ORF1ab/nsp3979L979LCtaTta841841B.1.5680.934444
ORF1ab/nsp3979L979LCtaTta571572AY.40.000889
ORF1ab/nsp3979L979LctActG1572AY.40.000002
ORF1ab/nsp3979L979LCtaTta526540B.1.1.70.000471
ORF1ab/nsp3979L979LctActG12540B.1.1.70.000011
ORF1ab/nsp3979L979LctActT2540B.1.1.70.000002
ORF1ab/nsp3979L979LCtaTta401404AY.250.002412
ORF1ab/nsp3979L979LctActG3404AY.250.000018
ORF1ab/nsp3979L979LCtaTta309311B.1.20.002721
ORF1ab/nsp3979L979LctActG2311B.1.20.000018
ORF1ab/nsp3979L979LCtaTta256261B.1.1770.003371
ORF1ab/nsp3979L979LctActG5261B.1.1770.000066
ORF1ab/nsp3979L979LCtaTta257258AY.1030.001596
ORF1ab/nsp3979L979LctActG1258AY.1030.000006
ORF1ab/nsp3979L979LCtaTta253253AY.50.005224
ORF1ab/nsp3979L979LCtaTta201201D.51
ORF1ab/nsp3979L979LCtaTta171172AY.440.001041
ORF1ab/nsp3979L979LctActG1172AY.440.000006
ORF1ab/nsp3979L979LCtaTta158159B.1.10.002866
ORF1ab/nsp3979L979LctActG1159B.1.10.000018
ORF1ab/nsp3979L979LCtaTta130131B.1.617.20.00049
ORF1ab/nsp3979L979LctActC1131B.1.617.20.000004
ORF1ab/nsp3979L979LCtaTta106106B.1.1600.003306
ORF1ab/nsp3979L979LCtaTta9090P.10.001418
ORF1ab/nsp3979L979LCtaTta8689B.10.000788
ORF1ab/nsp3979L979LctActG289B.10.000018
ORF1ab/nsp3979L979LctActT189B.10.000009
ORF1ab/nsp3979L979LCtaTta7878P.1.160.029181
ORF1ab/nsp3979L979LCtaTta6565AY.430.000288
ORF1ab/nsp3979L979LCtaTta6161B.1.6280.021494
ORF1ab/nsp3979L979LCtaTta5454B.1.3510.001605
ORF1ab/nsp3979L979LCtaTta5151AY.340.004945
ORF1ab/nsp3979L979LCtaTta4848AY.30.000477
ORF1ab/nsp3979L979LCtaTta4141AY.260.001161
ORF1ab/nsp3979L979LCtaTta4040AY.4.20.000868
ORF1ab/nsp3979L979LCtaTta4040B.1.4270.00202
ORF1ab/nsp3979L979delCTA---3030All0.000006
ORF1ab/nsp3979L979LCtaTta2930AY.1020.000769
ORF1ab/nsp3979L979LctActG130AY.1020.000027
ORF1ab/nsp3979L979LCtaTta2929AY.1000.001334
ORF1ab/nsp3979L979LCtaTta2929B.1.2400.006251
ORF1ab/nsp3979L979LCtaTta2828B.1.1470.021164
ORF1ab/nsp3979L979ICtaAta2727All0.000005
ORF1ab/nsp3979L979LCtaTta2727AY.290.000426
ORF1ab/nsp3979L979LCtaTta2626AY.5.40.007194
ORF1ab/nsp3979L979LCtaTta2525B.1.4970.007869
ORF1ab/nsp3979L979LCtaTta2525B.1.6151
ORF1ab/nsp3979L979LCtaTta2424AY.200.000933
ORF1ab/nsp3979L979LCtaTta2324B.1.5260.000541
ORF1ab/nsp3979L979LctActG124B.1.5260.000024
ORF1ab/nsp3979L979LCtaTta2323B.1.617.10.002966
ORF1ab/nsp3979L979LCtaTta2121B.1.4290.000494
ORF1ab/nsp3979L979LCtaTta2020B.1.1.4160.0181
ORF1ab/nsp3979L979LCtaTta1919AY.1190.000671
ORF1ab/nsp3979L979LCtaTta1919B.1.214.20.011391
ORF1ab/nsp3979L979LCtaTta1717AY.420.000684
ORF1ab/nsp3979L979LCtaTta1717C.370.001973
ORF1ab/nsp3979L979LCtaTta1616AY.98.10.000775
ORF1ab/nsp3979L979LCtaTta1515AY.740.001735
ORF1ab/nsp3979L979LCtaTta1515AZ.20.012315
ORF1ab/nsp3979L979LCtaTta1515B.1.1.5190.000596
ORF1ab/nsp3979L979LCtaTta1414AY.1100.001578
ORF1ab/nsp3979L979LCtaTta1014AY.390.000247
ORF1ab/nsp3979L979LctActG314AY.390.000074
ORF1ab/nsp3979L979LctActT114AY.390.000025
ORF1ab/nsp3979L979LCtaTta1414B0.001789
ORF1ab/nsp3979L979LCtaTta1313B.1.177.830.019259
ORF1ab/nsp3979L979LCtaTta1313P.1.10.00413
ORF1ab/nsp3979L979delCTA---1212B.1.1.70.000011
ORF1ab/nsp3979L979LCtaTta1212B.1.160.270.181818
ORF1ab/nsp3979L979PcTacCa1111All0.000002
ORF1ab/nsp3979L979LCtaTta1111AY.330.000735
ORF1ab/nsp3979L979LCtaTta1111B.1.177.460.010101
ORF1ab/nsp3979L979LCtaTta1111B.1.177.60.010742
ORF1ab/nsp3979L979LCtaTta1010B.1.1.280.003112
ORF1ab/nsp3979L979LCtaTta1010B.1.177.440.005189
ORF1ab/nsp3979L979LCtaTta710B.1.360.001021
ORF1ab/nsp3979L979LctActG310B.1.360.000438
ORF1ab/nsp3979L979LCtaTta99AY.9.20.000331
ORF1ab/nsp3979L979LCtaTta99B.1.177.600.001966
ORF1ab/nsp3979L979LCtaTta99B.1.6210.000797
ORF1ab/nsp3979L979LCtaTta99P.1.140.00043
ORF1ab/nsp3979L979VCtaGta78All0.000001
ORF1ab/nsp3979L979VCtAGtG18All0
ORF1ab/nsp3979L979LCtaTta88B.1.5950.002088
ORF1ab/nsp3979L979LCtaTta77AY.450.000852
ORF1ab/nsp3979L979LCtaTta67AY.610.000629
ORF1ab/nsp3979L979LctActG17AY.610.000105
ORF1ab/nsp3979L979LCtaTta77B.1.1.2140.000388
ORF1ab/nsp3979L979LCtaTta77B.1.1.2220.001428
ORF1ab/nsp3979L979LCtaTta77B.1.2340.000924
ORF1ab/nsp3979L979LCtaTta67Q.80.000989
ORF1ab/nsp3979L979LctActT17Q.80.000165
ORF1ab/nsp3979L979LCtaTta66AY.1130.000854
ORF1ab/nsp3979L979LCtaTta66AY.1180.000376
ORF1ab/nsp3979L979LCtaTta66AY.470.000187
ORF1ab/nsp3979L979LCtaTta66AY.7.10.000676
ORF1ab/nsp3979L979LCtaTta66AY.750.000336
ORF1ab/nsp3979L979LCtaTta66AY.99.20.000553
ORF1ab/nsp3979L979LCtaTta66B.1.2210.000426
ORF1ab/nsp3979L979LCtaTta66B.1.36.290.003104
ORF1ab/nsp3979L979LCtaTta66B.1.466.20.002347
ORF1ab/nsp3979L979LCtaTta66B.1.499.10.666667
ORF1ab/nsp3979L979LCtaTta66B.1.5250.000679
ORF1ab/nsp3979L979LCtaTta66P.1.70.001916
ORF1ab/nsp3979L979LCtaTta55AY.29.10.001103
ORF1ab/nsp3979L979LCtaTta45AY.39.10.000158
ORF1ab/nsp3979L979LctActG15AY.39.10.00004
ORF1ab/nsp3979L979LCtaTta55AY.920.001436
ORF1ab/nsp3979L979LCtaTta55B.1.1.2840.000537
ORF1ab/nsp3979L979ICtaAta55B.1.1.70.000004
ORF1ab/nsp3979L979LCtaTta55B.1.6120.013263
ORF1ab/nsp3979L979LCtaTta55D.20.000375
ORF1ab/nsp3979L979LCtaTta44AY.1200.000149
ORF1ab/nsp3979L979LCtaTta44AY.3.10.000341
ORF1ab/nsp3979L979LCtaTta44AY.300.001583
ORF1ab/nsp3979L979LCtaTta44AY.370.001264
ORF1ab/nsp3979L979LCtaTta44AY.410.001176
ORF1ab/nsp3979L979LCtaTta44AY.46.10.004107
ORF1ab/nsp3979L979LCtaTta44AY.850.001709
ORF1ab/nsp3979L979LCtaTta44B.1.1.250.002274
ORF1ab/nsp3979L979LCtaTta44B.1.1.390.002039
ORF1ab/nsp3979L979LCtaTta44B.1.1.510.006873
ORF1ab/nsp3979L979LCtaTta44B.1.177.120.000607
ORF1ab/nsp3979L979LCtaTta44B.1.177.150.002524
ORF1ab/nsp3979L979LCtaTta44B.1.177.400.020619
ORF1ab/nsp3979L979LCtaTta44B.1.2430.000278
ORF1ab/nsp3979L979LCtaTta44B.1.2580.000266
ORF1ab/nsp3979L979LCtaTta44B.1.4040.005208
ORF1ab/nsp3979L979LCtaTta44B.1.5820.001963
ORF1ab/nsp3979L979LCtaTta44B.1.5960.000349
ORF1ab/nsp3979L979ICtaAta44B.1.617.20.000015
ORF1ab/nsp3979L979LCtaTta33A.2.50.001497
ORF1ab/nsp3979L979RcTacGa33All0.000001
ORF1ab/nsp3979L979LCtaTta33AY.1170.000254
ORF1ab/nsp3979L979LCtaTta33AY.130.000483
ORF1ab/nsp3979L979LCtaTta33AY.160.001139
ORF1ab/nsp3979L979LCtaTta33AY.270.000194
ORF1ab/nsp3979L979LCtaTta33AY.360.000445
ORF1ab/nsp3979L979LCtaTta33AY.4.30.002525
ORF1ab/nsp3979L979LCtaTta33AY.670.001393
ORF1ab/nsp3979L979LCtaTta33AY.75.10.000541
ORF1ab/nsp3979L979LCtaTta33AY.90.000203
ORF1ab/nsp3979L979LctActG33B.1.1.3970.006757
ORF1ab/nsp3979L979VCtaGta23B.1.1.70.000002
ORF1ab/nsp3979L979VCtAGtG13B.1.1.70.000001
ORF1ab/nsp3979L979LCtaTta33B.1.1110.003525
ORF1ab/nsp3979L979LCtaTta33B.1.177.100.002634
ORF1ab/nsp3979L979LCtaTta33B.1.177.810.000568
ORF1ab/nsp3979L979LCtaTta33B.1.177.860.00055
ORF1ab/nsp3979L979LCtaTta33B.1.3110.000824
ORF1ab/nsp3979L979LCtaTta33B.1.3240.004815
ORF1ab/nsp3979L979LCtaTta33B.1.351.30.002629
ORF1ab/nsp3979L979LCtaTta33B.1.3770.013699
ORF1ab/nsp3979L979LCtaTta33B.1.3960.002117
ORF1ab/nsp3979L979LCtaTta33C.36.30.001702
ORF1ab/nsp3979L979LCtaTta33P.1.150.000697
ORF1ab/nsp3979L979LCtaTta33P.20.00056
ORF1ab/nsp3979L979LCtaTta33P.30.004785
ORF1ab/nsp3979L979LCtaTta33Q.10.000379
ORF1ab/nsp3979L979LCtaTta33Q.40.001364
ORF1ab/nsp3979L979LCtaTta22AD.20.000438
ORF1ab/nsp3979L979del1Cta-ta22All0
ORF1ab/nsp3979L979LCtaTta22AY.1010.000981
ORF1ab/nsp3979L979LCtaTta22AY.1050.001286
ORF1ab/nsp3979L979LCtaTta22AY.1060.00067
ORF1ab/nsp3979L979LCtaTta22AY.1110.000366
ORF1ab/nsp3979L979LCtaTta22AY.116.10.000623
ORF1ab/nsp3979L979LCtaTta22AY.120.20.002571
ORF1ab/nsp3979L979LCtaTta22AY.230.000139
ORF1ab/nsp3979L979ICtaAta22AY.30.00002
ORF1ab/nsp3979L979LCtaTta22AY.320.001065
ORF1ab/nsp3979L979LCtaTta22AY.380.000999
ORF1ab/nsp3979L979PcTacCa22AY.40.000003
ORF1ab/nsp3979L979VCtaGta22AY.40.000003
ORF1ab/nsp3979L979ICtaAta22AY.40.000003
ORF1ab/nsp3979L979LctActG12AY.4.50.000107
ORF1ab/nsp3979L979LCtaTta12AY.4.50.000107
ORF1ab/nsp3979L979LCtaTta22AY.510.001818
ORF1ab/nsp3979L979ICtaAta22AY.590.001059
ORF1ab/nsp3979L979LCtaTta22AY.600.001876
ORF1ab/nsp3979L979LCtaTta22AY.820.002714
ORF1ab/nsp3979L979LCtaTta22AY.840.000875
ORF1ab/nsp3979L979LCtaTta22AY.880.001768
ORF1ab/nsp3979L979PcTacCa22B.10.000018
ORF1ab/nsp3979L979LCtaTta22B.1.1.2740.010101
ORF1ab/nsp3979L979LCtaTta22B.1.1.3060.000877
ORF1ab/nsp3979L979LCtaTta22B.1.1.370.000386
ORF1ab/nsp3979L979LCtaTta22B.1.1.3980.006452
ORF1ab/nsp3979L979LCtaTta22B.1.177.540.001213
ORF1ab/nsp3979L979ICtaAta22B.1.20.000018
ORF1ab/nsp3979L979LCtaTta22B.1.258.40.006897
ORF1ab/nsp3979L979LCtaTta22B.1.2890.005319
ORF1ab/nsp3979L979delCTA---22B.1.360.000292
ORF1ab/nsp3979L979LCtaTta22B.1.36.10.002281
ORF1ab/nsp3979L979LctActG22B.1.36.220.002415
ORF1ab/nsp3979L979LCtaTta22B.1.416.10.003125
ORF1ab/nsp3979L979LCtaTta22N.10.033898
ORF1ab/nsp3979L979LCtaTta22P.1.120.000968
ORF1ab/nsp3979L979ICtaAta22Q.10.000253
ORF1ab/nsp3979L979LCtaTta11A0.000387
ORF1ab/nsp3979L979delCTA---11A.2.20.001689
ORF1ab/nsp3979L979LCtaTta11A.2.5.30.010309
ORF1ab/nsp3979L979LCtaTta11A.23.10.000704
ORF1ab/nsp3979L979LCtaTta11AK.10.012658
ORF1ab/nsp3979L979del2cTAc--11All0
ORF1ab/nsp3979L979QcTacAa11All0
ORF1ab/nsp3979L979SCTaTCa11All0
ORF1ab/nsp3979L979XCTaTGa11All0
ORF1ab/nsp3979L979ICtaAta11AY.1000.000046
ORF1ab/nsp3979L979ICtaAta11AY.1030.000006
ORF1ab/nsp3979L979LCtaTta11AY.1140.000231
ORF1ab/nsp3979L979LCtaTta11AY.1210.000135
ORF1ab/nsp3979L979LCtaTta11AY.140.000088
ORF1ab/nsp3979L979del1Cta-ta11AY.160.00038
ORF1ab/nsp3979L979ICtaAta11AY.200.000039
ORF1ab/nsp3979L979LCtaTta11AY.210.001898
ORF1ab/nsp3979L979PcTacCa11AY.320.000532
ORF1ab/nsp3979L979LCtaTta11AY.34.10.00051
ORF1ab/nsp3979L979LCtaTta11AY.350.000233
ORF1ab/nsp3979L979delCTA---11AY.350.000233
ORF1ab/nsp3979L979LCtaTta11AY.4.2.10.000149
ORF1ab/nsp3979L979LCtaTta11AY.4.40.000409
ORF1ab/nsp3979L979delCTA---11AY.430.000004
ORF1ab/nsp3979L979ICtaAta11AY.430.000004
ORF1ab/nsp3979L979delCTA---11AY.460.000104
ORF1ab/nsp3979L979LCtaTta11AY.460.000104
ORF1ab/nsp3979L979LCtaTta11AY.46.20.000635
ORF1ab/nsp3979L979LCtaTta11AY.46.40.000165
ORF1ab/nsp3979L979LCtaTta11AY.46.60.000072
ORF1ab/nsp3979L979LCtaTta11AY.480.000465
ORF1ab/nsp3979L979LCtaTta11AY.490.003195
ORF1ab/nsp3979L979LCtaTta11AY.500.000799
ORF1ab/nsp3979L979LCtaTta11AY.530.000288
ORF1ab/nsp3979L979LCtaTta11AY.550.000917
ORF1ab/nsp3979L979LCtaTta11AY.570.000656
ORF1ab/nsp3979L979LCtaTta11AY.590.00053
ORF1ab/nsp3979L979LCtaTta11AY.60.000041
ORF1ab/nsp3979L979LCtaTta11AY.640.000595
ORF1ab/nsp3979L979LCtaTta11AY.650.000533
ORF1ab/nsp3979L979LCtaTta11AY.690.000187
ORF1ab/nsp3979L979delCTA---11AY.710.000475
ORF1ab/nsp3979L979del2cTAc--11AY.750.000056
ORF1ab/nsp3979L979delCTA---11AY.75.10.00018
ORF1ab/nsp3979L979SCTaTCa11AY.790.001211
ORF1ab/nsp3979L979LCtaTta11AY.80.000606
ORF1ab/nsp3979L979LCtaTta11AY.9.10.000084
ORF1ab/nsp3979L979LCtaTta11AY.980.000079
ORF1ab/nsp3979L979VCtaGta11AY.980.000079
ORF1ab/nsp3979L979del1Cta-ta11B.10.000009
ORF1ab/nsp3979L979VCtaGta11B.10.000009
ORF1ab/nsp3979L979RcTacGa11B.10.000009
ORF1ab/nsp3979L979delCTA---11B.10.000009
ORF1ab/nsp3979L979LCtaTta11B.1.1.10.000327
ORF1ab/nsp3979L979LCtaTta11B.1.1.1290.009174
ORF1ab/nsp3979L979delCTA---11B.1.1.1420.017544
ORF1ab/nsp3979L979LCtaTta11B.1.1.1590.004673
ORF1ab/nsp3979L979LCtaTta11B.1.1.1890.001513
ORF1ab/nsp3979L979LCtaTta11B.1.1.2070.001182
ORF1ab/nsp3979L979LCtaTta11B.1.1.2160.00089
ORF1ab/nsp3979L979LCtaTta11B.1.1.2370.005405
ORF1ab/nsp3979L979LCtaTta11B.1.1.2980.000862
ORF1ab/nsp3979L979LCtaTta11B.1.1.3070.002532
ORF1ab/nsp3979L979delCTA---11B.1.1.3150.008475
ORF1ab/nsp3979L979LCtaTta11B.1.1.3150.008475
ORF1ab/nsp3979L979LCtaTta11B.1.1.3180.000302
ORF1ab/nsp3979L979LCtaTta11B.1.1.3220.008772
ORF1ab/nsp3979L979LCtaTta11B.1.1.3480.000796
ORF1ab/nsp3979L979LCtaTta11B.1.1.3620.005618
ORF1ab/nsp3979L979LCtaTta11B.1.1.3750.011905
ORF1ab/nsp3979L979delCTA---11B.1.1.3850.004464
ORF1ab/nsp3979L979LCtaTta11B.1.1.4480.002033
ORF1ab/nsp3979L979VCtaGta11B.1.1.5190.00004
ORF1ab/nsp3979L979LCtaTta11B.1.1.5250.005464
ORF1ab/nsp3979L979XCTaTGa11B.1.1.70.000001
ORF1ab/nsp3979L979RcTacGa11B.1.1.70.000001
ORF1ab/nsp3979L979PcTacCa11B.1.1.700.000341
ORF1ab/nsp3979L979RcTacGa11B.1.1.700.000341
ORF1ab/nsp3979L979LCtaTta11B.1.1080.005814
ORF1ab/nsp3979L979LCtaTta11B.1.1280.000635
ORF1ab/nsp3979L979LCtaTta11B.1.1460.004237
ORF1ab/nsp3979L979PcTacCa11B.1.1600.000031
ORF1ab/nsp3979L979LCtaTta11B.1.160.300.002976
ORF1ab/nsp3979L979ICtaAta11B.1.1770.000013
ORF1ab/nsp3979L979delCTA---11B.1.1770.000013
ORF1ab/nsp3979L979LCtaTta11B.1.177.170.000821
ORF1ab/nsp3979L979LCtaTta11B.1.177.210.000076
ORF1ab/nsp3979L979LCtaTta11B.1.177.50.001242
ORF1ab/nsp3979L979LCtaTta11B.1.177.570.000281
ORF1ab/nsp3979L979LCtaTta11B.1.177.580.001332
ORF1ab/nsp3979L979LCtaTta11B.1.177.620.001192
ORF1ab/nsp3979L979LCtaTta11B.1.177.70.000165
ORF1ab/nsp3979L979LCtaTta11B.1.177.750.001041
ORF1ab/nsp3979L979LCtaTta11B.1.177.80.000752
ORF1ab/nsp3979L979LCtaTta11B.1.1950.005025
ORF1ab/nsp3979L979QcTacAa11B.1.20.000009
ORF1ab/nsp3979L979ICtaAta11B.1.2180.005155
ORF1ab/nsp3979L979delCTA---11B.1.2210.000071
ORF1ab/nsp3979L979LctActT11B.1.221.40.004167
ORF1ab/nsp3979L979LCtaTta11B.1.2320.000537
ORF1ab/nsp3979L979LCtaTta11B.1.2350.002519
ORF1ab/nsp3979L979LCtaTta11B.1.2470.014925
ORF1ab/nsp3979L979PcTacCa11B.1.2580.000067
ORF1ab/nsp3979L979LCtaTta11B.1.3060.005714
ORF1ab/nsp3979L979delCTA---11B.1.3190.003049
ORF1ab/nsp3979L979LCtaTta11B.1.3200.001245
ORF1ab/nsp3979L979LCtaTta11B.1.3250.006897
ORF1ab/nsp3979L979PcTacCa11B.1.3320.003497
ORF1ab/nsp3979L979LCtaTta11B.1.3490.000715
ORF1ab/nsp3979L979LCtaTta11B.1.351.10.038462
ORF1ab/nsp3979L979LCtaTta11B.1.36.70.004
ORF1ab/nsp3979L979LCtaTta11B.1.3670.000792
ORF1ab/nsp3979L979LCtaTta11B.1.4030.003268
ORF1ab/nsp3979L979LCtaTta11B.1.4200.010417
ORF1ab/nsp3979L979LCtaTta11B.1.438.10.000107
ORF1ab/nsp3979L979LCtaTta11B.1.4390.005917
ORF1ab/nsp3979L979LCtaTta11B.1.4590.004082
ORF1ab/nsp3979L979LCtaTta11B.1.4660.023256
ORF1ab/nsp3979L979ICtaAta11B.1.4850.014925
ORF1ab/nsp3979L979LCtaTta11B.1.4960.125
ORF1ab/nsp3979L979LCtaTta11B.1.5030.002488
ORF1ab/nsp3979L979LCtaTta11B.1.5090.000866
ORF1ab/nsp3979L979LCtaTta11B.1.5100.026316
ORF1ab/nsp3979L979LCtaTta11B.1.5610.000397
ORF1ab/nsp3979L979LCtaTta11B.1.5650.00081
ORF1ab/nsp3979L979LCtaTta11B.1.5760.000907
ORF1ab/nsp3979L979LCtaTta11B.1.6090.000479
ORF1ab/nsp3979L979ICtaAta11B.1.617.10.000129
ORF1ab/nsp3979L979delCTA---11B.1.617.20.000004
ORF1ab/nsp3979L979LCtaTta11B.1.617.30.002985
ORF1ab/nsp3979L979LCtaTta11B.1.6200.000946
ORF1ab/nsp3979L979LCtaTta11B.1.621.10.000506
ORF1ab/nsp3979L979LCtaTta11B.1.6230.000536
ORF1ab/nsp3979L979LCtaTta11B.1.6300.005236
ORF1ab/nsp3979L979PcTacCa11B.1.6330.041667
ORF1ab/nsp3979L979LCtaTta11B.1.6370.000073
ORF1ab/nsp3979L979LCtaTta11B.1.80.001972
ORF1ab/nsp3979L979delCTA---11B.150.017544
ORF1ab/nsp3979L979LCtaTta11B.60.00091
ORF1ab/nsp3979L979LCtaTta11C.10.002392
ORF1ab/nsp3979L979LCtaTta11C.20.016129
ORF1ab/nsp3979L979LCtaTta11C.2.10.006667
ORF1ab/nsp3979L979LctActT11C.350.000774
ORF1ab/nsp3979L979delCTA---11C.370.000116
ORF1ab/nsp3979L979PcTacCa11D.20.000075
ORF1ab/nsp3979L979LCtaTta11N.50.001767
ORF1ab/nsp3979L979LCtaTta11P.1.170.000162
ORF1ab/nsp3979L979LCtaTta11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.