CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 978

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3978Y978YY1796YsyntaTtaC5472547215651-5653
ORF1ab/nsp3978Y978delY1796deldelTAT---303015651-5653
ORF1ab/nsp3978Y978HY1796HnonsynTatCat101015651-5653
ORF1ab/nsp3978Y978NY1796NnonsynTatAat7715651-5653
ORF1ab/nsp3978Y978CY1796CnonsyntAttGt3315651-5653
ORF1ab/nsp3978Y978XY1796XnonsyntaTtaA2215651-5653
ORF1ab/nsp3978Y978FY1796FnonsyntAttTt2215651-5653
ORF1ab/nsp3978Y978del1Y1796del1deltaTta-1115651-5653
ORF1ab/nsp3978Y978WY1796WnonsyntATtGG1115651-5653
ORF1ab/nsp3978Y978RY1796RnonsynTAtCGt1115651-5653
ORF1ab/nsp3978Y978DY1796DnonsynTatGat1115651-5653

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3978Y978YtaTtaC54725472All0.001047
ORF1ab/nsp3978Y978YtaTtaC26442644AY.40.004115
ORF1ab/nsp3978Y978YtaTtaC13091309B.1.36.270.999237
ORF1ab/nsp3978Y978YtaTtaC637637B.1.360.092938
ORF1ab/nsp3978Y978YtaTtaC246246B.1.1.70.00022
ORF1ab/nsp3978Y978YtaTtaC154154AY.430.000682
ORF1ab/nsp3978Y978YtaTtaC6666AY.1030.00041
ORF1ab/nsp3978Y978YtaTtaC6464B.10.000586
ORF1ab/nsp3978Y978YtaTtaC4343B.1.617.20.000162
ORF1ab/nsp3978Y978YtaTtaC3636B.1.36.220.043478
ORF1ab/nsp3978Y978YtaTtaC3131AY.9.10.002595
ORF1ab/nsp3978Y978delTAT---3030All0.000006
ORF1ab/nsp3978Y978YtaTtaC1818B.1.10.000327
ORF1ab/nsp3978Y978delTAT---1212B.1.1.70.000011
ORF1ab/nsp3978Y978YtaTtaC1111C.370.001277
ORF1ab/nsp3978Y978HTatCat1010All0.000002
ORF1ab/nsp3978Y978YtaTtaC99B.1.2600.0301
ORF1ab/nsp3978Y978YtaTtaC88B.1.1.5260.028369
ORF1ab/nsp3978Y978YtaTtaC88B.1.177.600.001747
ORF1ab/nsp3978Y978NTatAat77All0.000001
ORF1ab/nsp3978Y978YtaTtaC77AY.250.000042
ORF1ab/nsp3978Y978YtaTtaC77AY.390.000173
ORF1ab/nsp3978Y978YtaTtaC77AY.610.000733
ORF1ab/nsp3978Y978YtaTtaC77B.1.2210.000497
ORF1ab/nsp3978Y978YtaTtaC77B.1.36.380.011494
ORF1ab/nsp3978Y978YtaTtaC66AY.260.00017
ORF1ab/nsp3978Y978YtaTtaC66AY.420.000241
ORF1ab/nsp3978Y978YtaTtaC66AY.440.000037
ORF1ab/nsp3978Y978YtaTtaC66B.1.20.000053
ORF1ab/nsp3978Y978YtaTtaC66B.1.4680.034286
ORF1ab/nsp3978Y978YtaTtaC55AY.290.000079
ORF1ab/nsp3978Y978YtaTtaC55B.1.177.530.011962
ORF1ab/nsp3978Y978YtaTtaC55B.1.4560.01634
ORF1ab/nsp3978Y978YtaTtaC55P.10.000079
ORF1ab/nsp3978Y978YtaTtaC44AY.1020.000106
ORF1ab/nsp3978Y978YtaTtaC44AY.1180.000251
ORF1ab/nsp3978Y978YtaTtaC44AY.4.30.003367
ORF1ab/nsp3978Y978YtaTtaC44AY.50.000083
ORF1ab/nsp3978Y978YtaTtaC44B.1.1600.000125
ORF1ab/nsp3978Y978YtaTtaC44B.1.1770.000053
ORF1ab/nsp3978Y978YtaTtaC44B.1.36.160.005698
ORF1ab/nsp3978Y978CtAttGt33All0.000001
ORF1ab/nsp3978Y978YtaTtaC33B.1.2580.0002
ORF1ab/nsp3978Y978YtaTtaC33B.1.36.170.001482
ORF1ab/nsp3978Y978YtaTtaC33B.1.4620.021739
ORF1ab/nsp3978Y978YtaTtaC33B.1.5330.028846
ORF1ab/nsp3978Y978YtaTtaC33P.1.150.000697
ORF1ab/nsp3978Y978FtAttTt22All0
ORF1ab/nsp3978Y978XtaTtaA22All0
ORF1ab/nsp3978Y978YtaTtaC22AY.140.000176
ORF1ab/nsp3978Y978YtaTtaC22AY.280.003781
ORF1ab/nsp3978Y978HTatCat22AY.40.000003
ORF1ab/nsp3978Y978YtaTtaC22AY.4.2.10.000298
ORF1ab/nsp3978Y978YtaTtaC22AY.740.000231
ORF1ab/nsp3978Y978YtaTtaC22AY.840.000875
ORF1ab/nsp3978Y978YtaTtaC22AY.90.000135
ORF1ab/nsp3978Y978YtaTtaC22B.1.1.2730.013514
ORF1ab/nsp3978Y978HTatCat22B.1.1.70.000002
ORF1ab/nsp3978Y978HTatCat22B.1.20.000018
ORF1ab/nsp3978Y978YtaTtaC22B.1.3510.000059
ORF1ab/nsp3978Y978delTAT---22B.1.360.000292
ORF1ab/nsp3978Y978YtaTtaC22B.390.004662
ORF1ab/nsp3978Y978YtaTtaC22C.10.004785
ORF1ab/nsp3978Y978HTatCat22D.20.00015
ORF1ab/nsp3978Y978delTAT---11A.2.20.001689
ORF1ab/nsp3978Y978del1taTta-11All0
ORF1ab/nsp3978Y978WtATtGG11All0
ORF1ab/nsp3978Y978RTAtCGt11All0
ORF1ab/nsp3978Y978DTatGat11All0
ORF1ab/nsp3978Y978YtaTtaC11AU.20.002421
ORF1ab/nsp3978Y978YtaTtaC11AY.100.00053
ORF1ab/nsp3978Y978YtaTtaC11AY.1000.000046
ORF1ab/nsp3978Y978YtaTtaC11AY.1160.000287
ORF1ab/nsp3978Y978YtaTtaC11AY.1190.000035
ORF1ab/nsp3978Y978HTatCat11AY.120.10.000321
ORF1ab/nsp3978Y978FtAttTt11AY.200.000039
ORF1ab/nsp3978Y978YtaTtaC11AY.230.00007
ORF1ab/nsp3978Y978XtaTtaA11AY.240.000431
ORF1ab/nsp3978Y978YtaTtaC11AY.270.000065
ORF1ab/nsp3978Y978YtaTtaC11AY.300.000396
ORF1ab/nsp3978Y978delTAT---11AY.350.000233
ORF1ab/nsp3978Y978YtaTtaC11AY.380.000499
ORF1ab/nsp3978Y978NTatAat11AY.39.10.00004
ORF1ab/nsp3978Y978YtaTtaC11AY.4.20.000022
ORF1ab/nsp3978Y978YtaTtaC11AY.4.50.000107
ORF1ab/nsp3978Y978delTAT---11AY.430.000004
ORF1ab/nsp3978Y978YtaTtaC11AY.450.000122
ORF1ab/nsp3978Y978delTAT---11AY.460.000104
ORF1ab/nsp3978Y978YtaTtaC11AY.460.000104
ORF1ab/nsp3978Y978YtaTtaC11AY.46.10.001027
ORF1ab/nsp3978Y978YtaTtaC11AY.470.000031
ORF1ab/nsp3978Y978NTatAat11AY.690.000187
ORF1ab/nsp3978Y978YtaTtaC11AY.710.000475
ORF1ab/nsp3978Y978delTAT---11AY.710.000475
ORF1ab/nsp3978Y978delTAT---11AY.75.10.00018
ORF1ab/nsp3978Y978XtaTtaA11B0.000128
ORF1ab/nsp3978Y978YtaTtaC11B0.000128
ORF1ab/nsp3978Y978delTAT---11B.10.000009
ORF1ab/nsp3978Y978NTatAat11B.1.10.000018
ORF1ab/nsp3978Y978CtAttGt11B.1.10.000018
ORF1ab/nsp3978Y978YtaTtaC11B.1.1.1390.022727
ORF1ab/nsp3978Y978delTAT---11B.1.1.1420.017544
ORF1ab/nsp3978Y978NTatAat11B.1.1.2690.001353
ORF1ab/nsp3978Y978YtaTtaC11B.1.1.2910.000742
ORF1ab/nsp3978Y978delTAT---11B.1.1.3150.008475
ORF1ab/nsp3978Y978delTAT---11B.1.1.3850.004464
ORF1ab/nsp3978Y978YtaTtaC11B.1.1.500.000679
ORF1ab/nsp3978Y978FtAttTt11B.1.1.70.000001
ORF1ab/nsp3978Y978WtATtGG11B.1.1.70.000001
ORF1ab/nsp3978Y978YtaTtaC11B.1.1110.001175
ORF1ab/nsp3978Y978YtaTtaC11B.1.1470.000756
ORF1ab/nsp3978Y978YtaTtaC11B.1.1640.014925
ORF1ab/nsp3978Y978delTAT---11B.1.1770.000013
ORF1ab/nsp3978Y978CtAttGt11B.1.1770.000013
ORF1ab/nsp3978Y978HTatCat11B.1.1770.000013
ORF1ab/nsp3978Y978YtaTtaC11B.1.177.310.011494
ORF1ab/nsp3978Y978delTAT---11B.1.2210.000071
ORF1ab/nsp3978Y978DTatGat11B.1.221.40.004167
ORF1ab/nsp3978Y978YtaTtaC11B.1.2340.000132
ORF1ab/nsp3978Y978YtaTtaC11B.1.2400.000216
ORF1ab/nsp3978Y978delTAT---11B.1.3190.003049
ORF1ab/nsp3978Y978YtaTtaC11B.1.3370.005587
ORF1ab/nsp3978Y978del1taTta-11B.1.360.000146
ORF1ab/nsp3978Y978YtaTtaC11B.1.36.100.004785
ORF1ab/nsp3978Y978YtaTtaC11B.1.36.180.00042
ORF1ab/nsp3978Y978YtaTtaC11B.1.36.330.007576
ORF1ab/nsp3978Y978YtaTtaC11B.1.36.340.021277
ORF1ab/nsp3978Y978YtaTtaC11B.1.36.70.004
ORF1ab/nsp3978Y978YtaTtaC11B.1.36.80.001
ORF1ab/nsp3978Y978NTatAat11B.1.3690.000285
ORF1ab/nsp3978Y978YtaTtaC11B.1.4080.00369
ORF1ab/nsp3978Y978YtaTtaC11B.1.4290.000024
ORF1ab/nsp3978Y978YtaTtaC11B.1.5170.000427
ORF1ab/nsp3978Y978YtaTtaC11B.1.5230.002451
ORF1ab/nsp3978Y978NTatAat11B.1.6120.002653
ORF1ab/nsp3978Y978delTAT---11B.1.617.20.000004
ORF1ab/nsp3978Y978YtaTtaC11B.1.6230.000536
ORF1ab/nsp3978Y978NTatAat11B.1.6370.000073
ORF1ab/nsp3978Y978delTAT---11B.150.017544
ORF1ab/nsp3978Y978RTAtCGt11C.350.000774
ORF1ab/nsp3978Y978delTAT---11C.370.000116
ORF1ab/nsp3978Y978CtAttGt11D.20.000075
ORF1ab/nsp3978Y978YtaTtaC11L.30.003546
ORF1ab/nsp3978Y978YtaTtaC11P.30.001595