CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 977

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3977K977QK1795QnonsynAaaCaa1150031150020.9999915648-5650
ORF1ab/nsp3977K977QK1795QnonsynAaACaG11500310.000008695435648-5650
ORF1ab/nsp3977K977KK1795KsynaaAaaG1060106015648-5650
ORF1ab/nsp3977K977TK1795TnonsynaAaaCa53353315648-5650
ORF1ab/nsp3977K977RK1795RnonsynaAaaGa66620.9393945648-5650
ORF1ab/nsp3977K977RK1795RnonsynaAAaGG6640.06060615648-5650
ORF1ab/nsp3977K977EK1795EnonsynAaaGaa383815648-5650
ORF1ab/nsp3977K977NK1795NnonsynaaAaaC31160.5161295648-5650
ORF1ab/nsp3977K977NK1795NnonsynaaAaaT31150.4838715648-5650
ORF1ab/nsp3977K977delK1795deldelAAA---272715648-5650
ORF1ab/nsp3977K977IK1795InonsynaAaaTa212115648-5650
ORF1ab/nsp3977K977CK1795CnonsynAAATGC2215648-5650
ORF1ab/nsp3977K977DK1795DnonsynAaAGaC1115648-5650

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3977K977QAaaCaa115002115003All0.021995
ORF1ab/nsp3977K977QAaACaG1115003All0
ORF1ab/nsp3977K977QAaaCaa6318763187P.10.995447
ORF1ab/nsp3977K977QAaaCaa2081220812P.1.140.994837
ORF1ab/nsp3977K977QAaaCaa61676167P.1.170.997574
ORF1ab/nsp3977K977QAaaCaa42754275P.1.150.993262
ORF1ab/nsp3977K977QAaaCaa37023702P.1.100.997575
ORF1ab/nsp3977K977QAaaCaa31233123P.1.70.997126
ORF1ab/nsp3977K977QAaaCaa30143014P.1.10.957433
ORF1ab/nsp3977K977QAaaCaa26312631P.1.160.984287
ORF1ab/nsp3977K977QAaaCaa19591959P.1.120.948209
ORF1ab/nsp3977K977QAaaCaa11001100P.1.130.98832
ORF1ab/nsp3977K977KaaAaaG10601060All0.000203
ORF1ab/nsp3977K977QAaaCaa10281028P.1.17.10.899388
ORF1ab/nsp3977K977QAaaCaa10241024P.1.41
ORF1ab/nsp3977K977QAaaCaa862862P.1.20.996532
ORF1ab/nsp3977K977TaAaaCa533533All0.000102
ORF1ab/nsp3977K977QAaaCaa514514P.1.61
ORF1ab/nsp3977K977TaAaaCa435435B.1.20.00383
ORF1ab/nsp3977K977KaaAaaG388388AY.430.001719
ORF1ab/nsp3977K977KaaAaaG354354B.1.4290.008329
ORF1ab/nsp3977K977QAaaCaa209209P.1.81
ORF1ab/nsp3977K977QAaaCaa208208P.1.91
ORF1ab/nsp3977K977QAaaCaa188188B.1.6300.984293
ORF1ab/nsp3977K977QAaaCaa152152B.1.1.70.000136
ORF1ab/nsp3977K977QAaaCaa121122B.10.001108
ORF1ab/nsp3977K977QAaACaG1122B.10.000009
ORF1ab/nsp3977K977QAaaCaa114114P.1.10.10.926829
ORF1ab/nsp3977K977QAaaCaa9898P.1.111
ORF1ab/nsp3977K977QAaaCaa8282B.1.10.001488
ORF1ab/nsp3977K977TaAaaCa8080B.1.5960.006971
ORF1ab/nsp3977K977QAaaCaa7272AY.9.20.002645
ORF1ab/nsp3977K977RaAaaGa6266All0.000012
ORF1ab/nsp3977K977RaAAaGG466All0.000001
ORF1ab/nsp3977K977KaaAaaG5454B.1.1.70.000048
ORF1ab/nsp3977K977QAaaCaa4545B.1.2410.036526
ORF1ab/nsp3977K977KaaAaaG4141AY.40.000064
ORF1ab/nsp3977K977KaaAaaG4141AY.50.000847
ORF1ab/nsp3977K977EAaaGaa3838All0.000007
ORF1ab/nsp3977K977NaaAaaC1631All0.000003
ORF1ab/nsp3977K977NaaAaaT1531All0.000003
ORF1ab/nsp3977K977QAaaCaa2929C.370.003366
ORF1ab/nsp3977K977QAaaCaa2929P.1.31
ORF1ab/nsp3977K977RaAaaGa2828B.1.1.70.000025
ORF1ab/nsp3977K977delAAA---2727All0.000005
ORF1ab/nsp3977K977QAaaCaa2424P.1.10.21
ORF1ab/nsp3977K977KaaAaaG2323A.2.40.077441
ORF1ab/nsp3977K977IaAaaTa2121All0.000004
ORF1ab/nsp3977K977QAaaCaa2121B.1.1.5280.100962
ORF1ab/nsp3977K977KaaAaaG1919B.1.617.20.000072
ORF1ab/nsp3977K977IaAaaTa1717B.1.1.70.000015
ORF1ab/nsp3977K977EAaaGaa1616B.1.1.70.000014
ORF1ab/nsp3977K977QAaaCaa1616B.1.617.20.00006
ORF1ab/nsp3977K977KaaAaaG1313AY.260.000368
ORF1ab/nsp3977K977KaaAaaG1313B.1.1420.037681
ORF1ab/nsp3977K977QAaaCaa1313P.1.51
ORF1ab/nsp3977K977RaAaaGa1212AY.5.30.004049
ORF1ab/nsp3977K977KaaAaaG1212AY.860.009959
ORF1ab/nsp3977K977delAAA---1212B.1.1.70.000011
ORF1ab/nsp3977K977KaaAaaG1111AY.30.000109
ORF1ab/nsp3977K977QAaaCaa1010A.2.50.00499
ORF1ab/nsp3977K977QAaaCaa99B.1.1.280.002801
ORF1ab/nsp3977K977QAaaCaa88AY.260.000226
ORF1ab/nsp3977K977QAaaCaa88C.37.10.020942
ORF1ab/nsp3977K977KaaAaaG77AY.1020.000186
ORF1ab/nsp3977K977QAaaCaa77AY.430.000031
ORF1ab/nsp3977K977KaaAaaG77B.10.000064
ORF1ab/nsp3977K977TaAaaCa66AY.1130.000854
ORF1ab/nsp3977K977QAaaCaa66AY.250.000036
ORF1ab/nsp3977K977KaaAaaG66AY.390.000148
ORF1ab/nsp3977K977QAaaCaa66AY.40.000009
ORF1ab/nsp3977K977EAaaGaa66AY.430.000027
ORF1ab/nsp3977K977QAaaCaa66AY.440.000037
ORF1ab/nsp3977K977KaaAaaG66AY.440.000037
ORF1ab/nsp3977K977KaaAaaG66AY.470.000187
ORF1ab/nsp3977K977QAaaCaa66B.1.1770.000079
ORF1ab/nsp3977K977QAaaCaa66B.1.4160.007614
ORF1ab/nsp3977K977NaaAaaC66B.1.5750.00182
ORF1ab/nsp3977K977KaaAaaG66B.1.6270.012121
ORF1ab/nsp3977K977NaaAaaT55B.1.1.70.000004
ORF1ab/nsp3977K977QAaaCaa55B.1.4290.000118
ORF1ab/nsp3977K977QAaaCaa55B.1.5260.000118
ORF1ab/nsp3977K977QAaaCaa55B.1.6210.000443
ORF1ab/nsp3977K977TaAaaCa44AY.440.000024
ORF1ab/nsp3977K977QAaaCaa44B0.000511
ORF1ab/nsp3977K977KaaAaaG44B.1.10.000073
ORF1ab/nsp3977K977QAaaCaa44B.1.1.5070.034783
ORF1ab/nsp3977K977RaAaaGa44B.1.2210.000284
ORF1ab/nsp3977K977QAaaCaa44B.1.6370.000292
ORF1ab/nsp3977K977KaaAaaG33A.2.50.001497
ORF1ab/nsp3977K977EAaaGaa33AA.40.027273
ORF1ab/nsp3977K977QAaaCaa33AY.230.000209
ORF1ab/nsp3977K977QAaaCaa33AY.610.000314
ORF1ab/nsp3977K977QAaaCaa33AY.75.10.000541
ORF1ab/nsp3977K977QAaaCaa33AY.99.20.000276
ORF1ab/nsp3977K977NaaAaaC33B.1.1.370.000579
ORF1ab/nsp3977K977QAaaCaa33B.1.1.3720.002066
ORF1ab/nsp3977K977KaaAaaG33B.1.1770.00004
ORF1ab/nsp3977K977EAaaGaa33B.1.177.100.002634
ORF1ab/nsp3977K977QAaaCaa33B.1.177.70.000495
ORF1ab/nsp3977K977QAaaCaa33B.1.20.000026
ORF1ab/nsp3977K977KaaAaaG33B.1.5610.001191
ORF1ab/nsp3977K977QAaaCaa33B.1.5960.000261
ORF1ab/nsp3977K977NaaAaaT33B.1.617.20.000011
ORF1ab/nsp3977K977KaaAaaG33P.20.00056
ORF1ab/nsp3977K977CAAATGC22All0
ORF1ab/nsp3977K977KaaAaaG22AY.250.000012
ORF1ab/nsp3977K977QAaaCaa22AY.30.00002
ORF1ab/nsp3977K977QAaaCaa22AY.390.000049
ORF1ab/nsp3977K977KaaAaaG22AY.4.20.000043
ORF1ab/nsp3977K977QAaaCaa22AY.470.000062
ORF1ab/nsp3977K977QAaaCaa22AY.620.000871
ORF1ab/nsp3977K977RaAaaGa22AY.670.000929
ORF1ab/nsp3977K977KaaAaaG22AY.980.000158
ORF1ab/nsp3977K977QAaaCaa22B.1.1.2200.003717
ORF1ab/nsp3977K977QAaaCaa22B.1.1.4090.005666
ORF1ab/nsp3977K977IaAaaTa22B.1.1.5190.000079
ORF1ab/nsp3977K977QAaaCaa22B.1.1.5190.000079
ORF1ab/nsp3977K977NaaAaaT22B.1.1.5190.000079
ORF1ab/nsp3977K977QAaaCaa22B.1.1.540.006042
ORF1ab/nsp3977K977CAAATGC22B.1.1.70.000002
ORF1ab/nsp3977K977NaaAaaC22B.1.1770.000026
ORF1ab/nsp3977K977QAaaCaa22B.1.177.730.001133
ORF1ab/nsp3977K977QAaaCaa22B.1.3110.000549
ORF1ab/nsp3977K977QAaaCaa22B.1.3490.00143
ORF1ab/nsp3977K977RaAaaGa22B.1.3510.000059
ORF1ab/nsp3977K977delAAA---22B.1.360.000292
ORF1ab/nsp3977K977KaaAaaG22B.1.4680.011429
ORF1ab/nsp3977K977KaaAaaG22B.1.5960.000174
ORF1ab/nsp3977K977QAaaCaa22B.1.6230.001073
ORF1ab/nsp3977K977QAaaCaa22B.1.6360.013423
ORF1ab/nsp3977K977NaaAaaC22B.400.000729
ORF1ab/nsp3977K977EAaaGaa11A0.000387
ORF1ab/nsp3977K977KaaAaaG11A0.000387
ORF1ab/nsp3977K977QAaaCaa11A.2.20.001689
ORF1ab/nsp3977K977delAAA---11A.2.20.001689
ORF1ab/nsp3977K977DAaAGaC11All0
ORF1ab/nsp3977K977NaaAaaT11AY.1000.000046
ORF1ab/nsp3977K977QAaaCaa11AY.1000.000046
ORF1ab/nsp3977K977QAaaCaa11AY.1020.000027
ORF1ab/nsp3977K977QAaaCaa11AY.1030.000006
ORF1ab/nsp3977K977KaaAaaG11AY.1140.000231
ORF1ab/nsp3977K977KaaAaaG11AY.1180.000063
ORF1ab/nsp3977K977RaAAaGG11AY.1190.000035
ORF1ab/nsp3977K977KaaAaaG11AY.1190.000035
ORF1ab/nsp3977K977QAaaCaa11AY.1190.000035
ORF1ab/nsp3977K977QAaaCaa11AY.120.20.001285
ORF1ab/nsp3977K977KaaAaaG11AY.130.000161
ORF1ab/nsp3977K977TaAaaCa11AY.180.010101
ORF1ab/nsp3977K977QAaaCaa11AY.20.000356
ORF1ab/nsp3977K977KaaAaaG11AY.230.00007
ORF1ab/nsp3977K977NaaAaaT11AY.230.00007
ORF1ab/nsp3977K977EAaaGaa11AY.230.00007
ORF1ab/nsp3977K977TaAaaCa11AY.250.000006
ORF1ab/nsp3977K977RaAAaGG11AY.250.000006
ORF1ab/nsp3977K977EAaaGaa11AY.280.00189
ORF1ab/nsp3977K977NaaAaaT11AY.30.00001
ORF1ab/nsp3977K977KaaAaaG11AY.300.000396
ORF1ab/nsp3977K977RaAaaGa11AY.330.000067
ORF1ab/nsp3977K977QAaaCaa11AY.340.000097
ORF1ab/nsp3977K977delAAA---11AY.350.000233
ORF1ab/nsp3977K977EAaaGaa11AY.350.000233
ORF1ab/nsp3977K977KaaAaaG11AY.39.10.00004
ORF1ab/nsp3977K977RaAaaGa11AY.40.000002
ORF1ab/nsp3977K977RaAaaGa11AY.410.000294
ORF1ab/nsp3977K977RaAAaGG11AY.420.00004
ORF1ab/nsp3977K977KaaAaaG11AY.420.00004
ORF1ab/nsp3977K977QAaaCaa11AY.420.00004
ORF1ab/nsp3977K977delAAA---11AY.430.000004
ORF1ab/nsp3977K977TaAaaCa11AY.430.000004
ORF1ab/nsp3977K977NaaAaaC11AY.440.000006
ORF1ab/nsp3977K977QAaaCaa11AY.450.000122
ORF1ab/nsp3977K977delAAA---11AY.460.000104
ORF1ab/nsp3977K977NaaAaaC11AY.46.50.000198
ORF1ab/nsp3977K977QAaaCaa11AY.46.60.000072
ORF1ab/nsp3977K977RaAaaGa11AY.50.000021
ORF1ab/nsp3977K977RaAAaGG11AY.5.40.000277
ORF1ab/nsp3977K977KaaAaaG11AY.590.00053
ORF1ab/nsp3977K977KaaAaaG11AY.640.000595
ORF1ab/nsp3977K977delAAA---11AY.710.000475
ORF1ab/nsp3977K977QAaaCaa11AY.710.000475
ORF1ab/nsp3977K977QAaaCaa11AY.740.000116
ORF1ab/nsp3977K977KaaAaaG11AY.740.000116
ORF1ab/nsp3977K977RaAaaGa11AY.750.000056
ORF1ab/nsp3977K977QAaaCaa11AY.750.000056
ORF1ab/nsp3977K977delAAA---11AY.75.10.00018
ORF1ab/nsp3977K977QAaaCaa11AY.840.000437
ORF1ab/nsp3977K977KaaAaaG11AY.99.20.000092
ORF1ab/nsp3977K977delAAA---11B.10.000009
ORF1ab/nsp3977K977TaAaaCa11B.10.000009
ORF1ab/nsp3977K977RaAaaGa11B.10.000009
ORF1ab/nsp3977K977EAaaGaa11B.10.000009
ORF1ab/nsp3977K977QAaaCaa11B.1.1.1210.002427
ORF1ab/nsp3977K977delAAA---11B.1.1.1420.017544
ORF1ab/nsp3977K977QAaaCaa11B.1.1.1980.001468
ORF1ab/nsp3977K977QAaaCaa11B.1.1.2410.00207
ORF1ab/nsp3977K977delAAA---11B.1.1.3150.008475
ORF1ab/nsp3977K977KaaAaaG11B.1.1.3690.000446
ORF1ab/nsp3977K977RaAaaGa11B.1.1.3970.002252
ORF1ab/nsp3977K977RaAaaGa11B.1.1.5190.00004
ORF1ab/nsp3977K977RaAaaGa11B.1.1600.000031
ORF1ab/nsp3977K977QAaaCaa11B.1.1700.00431
ORF1ab/nsp3977K977TaAaaCa11B.1.1770.000013
ORF1ab/nsp3977K977EAaaGaa11B.1.177.570.000281
ORF1ab/nsp3977K977QAaaCaa11B.1.177.860.000183
ORF1ab/nsp3977K977QAaaCaa11B.1.1790.003759
ORF1ab/nsp3977K977EAaaGaa11B.1.20.000009
ORF1ab/nsp3977K977IaAaaTa11B.1.20.000009
ORF1ab/nsp3977K977KaaAaaG11B.1.20.000009
ORF1ab/nsp3977K977TaAaaCa11B.1.2060.000816
ORF1ab/nsp3977K977QAaaCaa11B.1.2140.003663
ORF1ab/nsp3977K977QAaaCaa11B.1.2210.000071
ORF1ab/nsp3977K977RaAaaGa11B.1.221.40.004167
ORF1ab/nsp3977K977IaAaaTa11B.1.2340.000132
ORF1ab/nsp3977K977KaaAaaG11B.1.2390.001221
ORF1ab/nsp3977K977TaAaaCa11B.1.3110.000275
ORF1ab/nsp3977K977delAAA---11B.1.3190.003049
ORF1ab/nsp3977K977QAaaCaa11B.1.3320.003497
ORF1ab/nsp3977K977KaaAaaG11B.1.3510.00003
ORF1ab/nsp3977K977QAaaCaa11B.1.3510.00003
ORF1ab/nsp3977K977KaaAaaG11B.1.360.000146
ORF1ab/nsp3977K977QAaaCaa11B.1.3690.000285
ORF1ab/nsp3977K977QAaaCaa11B.1.3750.00082
ORF1ab/nsp3977K977EAaaGaa11B.1.3750.00082
ORF1ab/nsp3977K977EAaaGaa11B.1.3850.010638
ORF1ab/nsp3977K977KaaAaaG11B.1.3960.000706
ORF1ab/nsp3977K977QAaaCaa11B.1.4150.014286
ORF1ab/nsp3977K977KaaAaaG11B.1.4270.00005
ORF1ab/nsp3977K977KaaAaaG11B.1.4740.001901
ORF1ab/nsp3977K977KaaAaaG11B.1.4970.000315
ORF1ab/nsp3977K977RaAaaGa11B.1.4990.00105
ORF1ab/nsp3977K977QAaaCaa11B.1.5030.002488
ORF1ab/nsp3977K977RaAaaGa11B.1.5240.001406
ORF1ab/nsp3977K977QAaaCaa11B.1.5330.009615
ORF1ab/nsp3977K977TaAaaCa11B.1.5740.002151
ORF1ab/nsp3977K977QAaaCaa11B.1.5820.000491
ORF1ab/nsp3977K977KaaAaaG11B.1.5950.000261
ORF1ab/nsp3977K977NaaAaaC11B.1.5960.000087
ORF1ab/nsp3977K977KaaAaaG11B.1.6020.006536
ORF1ab/nsp3977K977NaaAaaT11B.1.6090.000479
ORF1ab/nsp3977K977RaAaaGa11B.1.617.20.000004
ORF1ab/nsp3977K977EAaaGaa11B.1.617.20.000004
ORF1ab/nsp3977K977delAAA---11B.1.617.20.000004
ORF1ab/nsp3977K977QAaaCaa11B.1.6200.000946
ORF1ab/nsp3977K977KaaAaaG11B.1.6210.000089
ORF1ab/nsp3977K977KaaAaaG11B.1.621.10.000506
ORF1ab/nsp3977K977NaaAaaT11B.1.6370.000073
ORF1ab/nsp3977K977QAaaCaa11B.1.930.000934
ORF1ab/nsp3977K977delAAA---11B.150.017544
ORF1ab/nsp3977K977DAaAGaC11C.350.000774
ORF1ab/nsp3977K977QAaaCaa11C.350.000774
ORF1ab/nsp3977K977delAAA---11C.370.000116
ORF1ab/nsp3977K977KaaAaaG11D.20.000075
ORF1ab/nsp3977K977RaAaaGa11P.20.000187