CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 977 | K977Q | K1795Q | nonsyn | Aaa | Caa | 115003 | 115002 | 0.999991 | 5648-5650 |
ORF1ab/nsp3 | 977 | K977Q | K1795Q | nonsyn | AaA | CaG | 115003 | 1 | 0.00000869543 | 5648-5650 |
ORF1ab/nsp3 | 977 | K977K | K1795K | syn | aaA | aaG | 1060 | 1060 | 1 | 5648-5650 |
ORF1ab/nsp3 | 977 | K977T | K1795T | nonsyn | aAa | aCa | 533 | 533 | 1 | 5648-5650 |
ORF1ab/nsp3 | 977 | K977R | K1795R | nonsyn | aAa | aGa | 66 | 62 | 0.939394 | 5648-5650 |
ORF1ab/nsp3 | 977 | K977R | K1795R | nonsyn | aAA | aGG | 66 | 4 | 0.0606061 | 5648-5650 |
ORF1ab/nsp3 | 977 | K977E | K1795E | nonsyn | Aaa | Gaa | 38 | 38 | 1 | 5648-5650 |
ORF1ab/nsp3 | 977 | K977N | K1795N | nonsyn | aaA | aaC | 31 | 16 | 0.516129 | 5648-5650 |
ORF1ab/nsp3 | 977 | K977N | K1795N | nonsyn | aaA | aaT | 31 | 15 | 0.483871 | 5648-5650 |
ORF1ab/nsp3 | 977 | K977del | K1795del | del | AAA | --- | 27 | 27 | 1 | 5648-5650 |
ORF1ab/nsp3 | 977 | K977I | K1795I | nonsyn | aAa | aTa | 21 | 21 | 1 | 5648-5650 |
ORF1ab/nsp3 | 977 | K977C | K1795C | nonsyn | AAA | TGC | 2 | 2 | 1 | 5648-5650 |
ORF1ab/nsp3 | 977 | K977D | K1795D | nonsyn | AaA | GaC | 1 | 1 | 1 | 5648-5650 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 115002 | 115003 | All | 0.021995 |
ORF1ab/nsp3 | 977 | K977Q | AaA | CaG | 1 | 115003 | All | 0 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 63187 | 63187 | P.1 | 0.995447 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 20812 | 20812 | P.1.14 | 0.994837 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 6167 | 6167 | P.1.17 | 0.997574 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 4275 | 4275 | P.1.15 | 0.993262 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 3702 | 3702 | P.1.10 | 0.997575 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 3123 | 3123 | P.1.7 | 0.997126 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 3014 | 3014 | P.1.1 | 0.957433 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 2631 | 2631 | P.1.16 | 0.984287 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 1959 | 1959 | P.1.12 | 0.948209 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 1100 | 1100 | P.1.13 | 0.98832 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 1060 | 1060 | All | 0.000203 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 1028 | 1028 | P.1.17.1 | 0.899388 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 1024 | 1024 | P.1.4 | 1 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 862 | 862 | P.1.2 | 0.996532 |
ORF1ab/nsp3 | 977 | K977T | aAa | aCa | 533 | 533 | All | 0.000102 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 514 | 514 | P.1.6 | 1 |
ORF1ab/nsp3 | 977 | K977T | aAa | aCa | 435 | 435 | B.1.2 | 0.00383 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 388 | 388 | AY.43 | 0.001719 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 354 | 354 | B.1.429 | 0.008329 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 209 | 209 | P.1.8 | 1 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 208 | 208 | P.1.9 | 1 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 188 | 188 | B.1.630 | 0.984293 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 152 | 152 | B.1.1.7 | 0.000136 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 121 | 122 | B.1 | 0.001108 |
ORF1ab/nsp3 | 977 | K977Q | AaA | CaG | 1 | 122 | B.1 | 0.000009 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 114 | 114 | P.1.10.1 | 0.926829 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 98 | 98 | P.1.11 | 1 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 82 | 82 | B.1.1 | 0.001488 |
ORF1ab/nsp3 | 977 | K977T | aAa | aCa | 80 | 80 | B.1.596 | 0.006971 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 72 | 72 | AY.9.2 | 0.002645 |
ORF1ab/nsp3 | 977 | K977R | aAa | aGa | 62 | 66 | All | 0.000012 |
ORF1ab/nsp3 | 977 | K977R | aAA | aGG | 4 | 66 | All | 0.000001 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 54 | 54 | B.1.1.7 | 0.000048 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 45 | 45 | B.1.241 | 0.036526 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 41 | 41 | AY.4 | 0.000064 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 41 | 41 | AY.5 | 0.000847 |
ORF1ab/nsp3 | 977 | K977E | Aaa | Gaa | 38 | 38 | All | 0.000007 |
ORF1ab/nsp3 | 977 | K977N | aaA | aaC | 16 | 31 | All | 0.000003 |
ORF1ab/nsp3 | 977 | K977N | aaA | aaT | 15 | 31 | All | 0.000003 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 29 | 29 | C.37 | 0.003366 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 29 | 29 | P.1.3 | 1 |
ORF1ab/nsp3 | 977 | K977R | aAa | aGa | 28 | 28 | B.1.1.7 | 0.000025 |
ORF1ab/nsp3 | 977 | K977del | AAA | --- | 27 | 27 | All | 0.000005 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 24 | 24 | P.1.10.2 | 1 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 23 | 23 | A.2.4 | 0.077441 |
ORF1ab/nsp3 | 977 | K977I | aAa | aTa | 21 | 21 | All | 0.000004 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 21 | 21 | B.1.1.528 | 0.100962 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 19 | 19 | B.1.617.2 | 0.000072 |
ORF1ab/nsp3 | 977 | K977I | aAa | aTa | 17 | 17 | B.1.1.7 | 0.000015 |
ORF1ab/nsp3 | 977 | K977E | Aaa | Gaa | 16 | 16 | B.1.1.7 | 0.000014 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 16 | 16 | B.1.617.2 | 0.00006 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 13 | 13 | AY.26 | 0.000368 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 13 | 13 | B.1.142 | 0.037681 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 13 | 13 | P.1.5 | 1 |
ORF1ab/nsp3 | 977 | K977R | aAa | aGa | 12 | 12 | AY.5.3 | 0.004049 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 12 | 12 | AY.86 | 0.009959 |
ORF1ab/nsp3 | 977 | K977del | AAA | --- | 12 | 12 | B.1.1.7 | 0.000011 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 11 | 11 | AY.3 | 0.000109 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 10 | 10 | A.2.5 | 0.00499 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 9 | 9 | B.1.1.28 | 0.002801 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 8 | 8 | AY.26 | 0.000226 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 8 | 8 | C.37.1 | 0.020942 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 7 | 7 | AY.43 | 0.000031 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp3 | 977 | K977T | aAa | aCa | 6 | 6 | AY.113 | 0.000854 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 6 | 6 | AY.39 | 0.000148 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp3 | 977 | K977E | Aaa | Gaa | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 6 | 6 | AY.47 | 0.000187 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 6 | 6 | B.1.416 | 0.007614 |
ORF1ab/nsp3 | 977 | K977N | aaA | aaC | 6 | 6 | B.1.575 | 0.00182 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 6 | 6 | B.1.627 | 0.012121 |
ORF1ab/nsp3 | 977 | K977N | aaA | aaT | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 5 | 5 | B.1.429 | 0.000118 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 5 | 5 | B.1.621 | 0.000443 |
ORF1ab/nsp3 | 977 | K977T | aAa | aCa | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 4 | 4 | B | 0.000511 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 4 | 4 | B.1.1.507 | 0.034783 |
ORF1ab/nsp3 | 977 | K977R | aAa | aGa | 4 | 4 | B.1.221 | 0.000284 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 4 | 4 | B.1.637 | 0.000292 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp3 | 977 | K977E | Aaa | Gaa | 3 | 3 | AA.4 | 0.027273 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp3 | 977 | K977N | aaA | aaC | 3 | 3 | B.1.1.37 | 0.000579 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 3 | 3 | B.1.1.372 | 0.002066 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp3 | 977 | K977E | Aaa | Gaa | 3 | 3 | B.1.177.10 | 0.002634 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 3 | 3 | B.1.177.7 | 0.000495 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 3 | 3 | B.1.561 | 0.001191 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp3 | 977 | K977N | aaA | aaT | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp3 | 977 | K977C | AAA | TGC | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp3 | 977 | K977R | aAa | aGa | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 2 | 2 | B.1.1.220 | 0.003717 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 2 | 2 | B.1.1.409 | 0.005666 |
ORF1ab/nsp3 | 977 | K977I | aAa | aTa | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 977 | K977N | aaA | aaT | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 2 | 2 | B.1.1.54 | 0.006042 |
ORF1ab/nsp3 | 977 | K977C | AAA | TGC | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 977 | K977N | aaA | aaC | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 2 | 2 | B.1.349 | 0.00143 |
ORF1ab/nsp3 | 977 | K977R | aAa | aGa | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 977 | K977del | AAA | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 2 | 2 | B.1.468 | 0.011429 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 2 | 2 | B.1.636 | 0.013423 |
ORF1ab/nsp3 | 977 | K977N | aaA | aaC | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp3 | 977 | K977E | Aaa | Gaa | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 977 | K977del | AAA | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 977 | K977D | AaA | GaC | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 977 | K977N | aaA | aaT | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 977 | K977R | aAA | aGG | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 977 | K977T | aAa | aCa | 1 | 1 | AY.18 | 0.010101 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 977 | K977N | aaA | aaT | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 977 | K977E | Aaa | Gaa | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 977 | K977T | aAa | aCa | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 977 | K977R | aAA | aGG | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 977 | K977E | Aaa | Gaa | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp3 | 977 | K977N | aaA | aaT | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 977 | K977R | aAa | aGa | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 977 | K977del | AAA | --- | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 977 | K977E | Aaa | Gaa | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 977 | K977R | aAa | aGa | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 977 | K977R | aAa | aGa | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 977 | K977R | aAA | aGG | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 977 | K977del | AAA | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 977 | K977T | aAa | aCa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 977 | K977N | aaA | aaC | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 977 | K977del | AAA | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 977 | K977N | aaA | aaC | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 977 | K977R | aAa | aGa | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 977 | K977R | aAA | aGG | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp3 | 977 | K977del | AAA | --- | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 977 | K977R | aAa | aGa | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 977 | K977del | AAA | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 977 | K977del | AAA | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 977 | K977T | aAa | aCa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 977 | K977R | aAa | aGa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 977 | K977E | Aaa | Gaa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 1 | 1 | B.1.1.121 | 0.002427 |
ORF1ab/nsp3 | 977 | K977del | AAA | --- | 1 | 1 | B.1.1.142 | 0.017544 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp3 | 977 | K977del | AAA | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 977 | K977R | aAa | aGa | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp3 | 977 | K977R | aAa | aGa | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 977 | K977R | aAa | aGa | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp3 | 977 | K977T | aAa | aCa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 977 | K977E | Aaa | Gaa | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp3 | 977 | K977E | Aaa | Gaa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 977 | K977I | aAa | aTa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 977 | K977T | aAa | aCa | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 977 | K977R | aAa | aGa | 1 | 1 | B.1.221.4 | 0.004167 |
ORF1ab/nsp3 | 977 | K977I | aAa | aTa | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp3 | 977 | K977T | aAa | aCa | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 977 | K977del | AAA | --- | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 977 | K977E | Aaa | Gaa | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 977 | K977E | Aaa | Gaa | 1 | 1 | B.1.385 | 0.010638 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 1 | 1 | B.1.474 | 0.001901 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 977 | K977R | aAa | aGa | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp3 | 977 | K977R | aAa | aGa | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp3 | 977 | K977T | aAa | aCa | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 977 | K977N | aaA | aaC | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 1 | 1 | B.1.602 | 0.006536 |
ORF1ab/nsp3 | 977 | K977N | aaA | aaT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 977 | K977R | aAa | aGa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 977 | K977E | Aaa | Gaa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 977 | K977del | AAA | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 977 | K977N | aaA | aaT | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp3 | 977 | K977del | AAA | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp3 | 977 | K977D | AaA | GaC | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 977 | K977Q | Aaa | Caa | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 977 | K977del | AAA | --- | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 977 | K977K | aaA | aaG | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 977 | K977R | aAa | aGa | 1 | 1 | P.2 | 0.000187 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|