CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 975

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3975A975AA1793AsyngcTgcC196219560.9969425642-5644
ORF1ab/nsp3975A975AA1793AsyngcTgcA196240.002038745642-5644
ORF1ab/nsp3975A975AA1793AsyngcTgcG196220.001019375642-5644
ORF1ab/nsp3975A975VA1793VnonsyngCtgTt3073040.9902285642-5644
ORF1ab/nsp3975A975VA1793VnonsyngCTgTA30730.009771995642-5644
ORF1ab/nsp3975A975SA1793SnonsynGctTct54510.9444445642-5644
ORF1ab/nsp3975A975SA1793SnonsynGCtAGt5420.0370375642-5644
ORF1ab/nsp3975A975SA1793SnonsynGcTTcA5410.01851855642-5644
ORF1ab/nsp3975A975delA1793deldelGCT---242415642-5644
ORF1ab/nsp3975A975TA1793TnonsynGctAct16140.8755642-5644
ORF1ab/nsp3975A975TA1793TnonsynGcTAcA1620.1255642-5644
ORF1ab/nsp3975A975IA1793InonsynGCtATt940.4444445642-5644
ORF1ab/nsp3975A975IA1793InonsynGCTATA940.4444445642-5644
ORF1ab/nsp3975A975IA1793InonsynGCTATC910.1111115642-5644
ORF1ab/nsp3975A975DA1793DnonsyngCtgAt8815642-5644
ORF1ab/nsp3975A975PA1793PnonsynGctCct7715642-5644
ORF1ab/nsp3975A975GA1793GnonsyngCtgGt5515642-5644
ORF1ab/nsp3975A975NA1793NnonsynGCtAAt3315642-5644
ORF1ab/nsp3975A975XA1793XnonsynGCTTGA320.6666675642-5644
ORF1ab/nsp3975A975RA1793RnonsynGCTAGA320.6666675642-5644
ORF1ab/nsp3975A975XA1793XnonsynGCTTAA310.3333335642-5644
ORF1ab/nsp3975A975RA1793RnonsynGCtCGt310.3333335642-5644
ORF1ab/nsp3975A975del1A1793del1delgcTgc-2215642-5644
ORF1ab/nsp3975A975KA1793KnonsynGCTAAA2215642-5644
ORF1ab/nsp3975A975CA1793CnonsynGCtTGt2215642-5644
ORF1ab/nsp3975A975LA1793LnonsynGCTTTA2215642-5644
ORF1ab/nsp3975A975FA1793FnonsynGCtTTt2215642-5644
ORF1ab/nsp3975A975YA1793YnonsynGCtTAt1115642-5644
ORF1ab/nsp3975A975EA1793EnonsyngCTgAA1115642-5644

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3975A975AgcTgcC19561962All0.000374
ORF1ab/nsp3975A975AgcTgcA41962All0.000001
ORF1ab/nsp3975A975AgcTgcG21962All0
ORF1ab/nsp3975A975AgcTgcC16831683AY.670.781337
ORF1ab/nsp3975A975VgCtgTt304307All0.000058
ORF1ab/nsp3975A975VgCTgTA3307All0.000001
ORF1ab/nsp3975A975VgCtgTt137139B.1.1.70.000123
ORF1ab/nsp3975A975VgCTgTA2139B.1.1.70.000002
ORF1ab/nsp3975A975AgcTgcC8888B.1.617.20.000331
ORF1ab/nsp3975A975SGctTct5154All0.00001
ORF1ab/nsp3975A975SGCtAGt254All0
ORF1ab/nsp3975A975SGcTTcA154All0
ORF1ab/nsp3975A975VgCtgTt2727AY.40.000042
ORF1ab/nsp3975A975delGCT---2424All0.000005
ORF1ab/nsp3975A975AgcTgcC1519B.1.1.70.000013
ORF1ab/nsp3975A975AgcTgcA319B.1.1.70.000003
ORF1ab/nsp3975A975AgcTgcG119B.1.1.70.000001
ORF1ab/nsp3975A975VgCtgTt1818B.1.177.320.024291
ORF1ab/nsp3975A975TGctAct1416All0.000003
ORF1ab/nsp3975A975TGcTAcA216All0
ORF1ab/nsp3975A975AgcTgcC1616AY.290.000252
ORF1ab/nsp3975A975AgcTgcC1516P.10.000236
ORF1ab/nsp3975A975AgcTgcA116P.10.000016
ORF1ab/nsp3975A975AgcTgcC1515B.1.4290.000353
ORF1ab/nsp3975A975VgCtgTt1414AY.430.000062
ORF1ab/nsp3975A975VgCtgTt1414B.1.617.20.000053
ORF1ab/nsp3975A975VgCtgTt1313B.1.3910.014656
ORF1ab/nsp3975A975AgcTgcC1212AY.620.005229
ORF1ab/nsp3975A975AgcTgcC1111AY.40.000017
ORF1ab/nsp3975A975delGCT---1111B.1.1.70.00001
ORF1ab/nsp3975A975IGCTATA49All0.000001
ORF1ab/nsp3975A975IGCtATt49All0.000001
ORF1ab/nsp3975A975IGCTATC19All0
ORF1ab/nsp3975A975SGctTct99AY.440.000055
ORF1ab/nsp3975A975DgCtgAt88All0.000002
ORF1ab/nsp3975A975SGctTct88AY.40.000012
ORF1ab/nsp3975A975IGCTATA48B.1.1.70.000004
ORF1ab/nsp3975A975IGCtATt48B.1.1.70.000004
ORF1ab/nsp3975A975VgCtgTt88B.1.4000.003432
ORF1ab/nsp3975A975PGctCct77All0.000001
ORF1ab/nsp3975A975AgcTgcC77AY.690.001307
ORF1ab/nsp3975A975SGctTct67B.1.1.70.000005
ORF1ab/nsp3975A975SGCtAGt17B.1.1.70.000001
ORF1ab/nsp3975A975VgCtgTt77B.1.1770.000092
ORF1ab/nsp3975A975VgCtgTt66B.1.20.000053
ORF1ab/nsp3975A975GgCtgGt55All0.000001
ORF1ab/nsp3975A975AgcTgcC55B.1.1.1230.089286
ORF1ab/nsp3975A975AgcTgcC44AY.1030.000025
ORF1ab/nsp3975A975VgCtgTt44AY.250.000024
ORF1ab/nsp3975A975AgcTgcC44AY.250.000024
ORF1ab/nsp3975A975VgCtgTt44AY.290.000063
ORF1ab/nsp3975A975VgCtgTt44AY.30.00004
ORF1ab/nsp3975A975VgCtgTt44AY.440.000024
ORF1ab/nsp3975A975AgcTgcC44AY.440.000024
ORF1ab/nsp3975A975AgcTgcC44AY.470.000124
ORF1ab/nsp3975A975SGctTct44B.1.1600.000125
ORF1ab/nsp3975A975AgcTgcC44B.1.5250.000453
ORF1ab/nsp3975A975NGCtAAt33All0.000001
ORF1ab/nsp3975A975XGCTTGA23All0
ORF1ab/nsp3975A975RGCTAGA23All0
ORF1ab/nsp3975A975XGCTTAA13All0
ORF1ab/nsp3975A975RGCtCGt13All0
ORF1ab/nsp3975A975AgcTgcC33AY.1000.000138
ORF1ab/nsp3975A975AgcTgcC33AY.1020.00008
ORF1ab/nsp3975A975AgcTgcC33AY.1200.000112
ORF1ab/nsp3975A975TGctAct33AY.40.000005
ORF1ab/nsp3975A975AgcTgcC33AY.610.000314
ORF1ab/nsp3975A975AgcTgcC33AY.75.10.000541
ORF1ab/nsp3975A975GgCtgGt33B.10.000027
ORF1ab/nsp3975A975VgCtgTt33B.10.000027
ORF1ab/nsp3975A975DgCtgAt33B.10.000027
ORF1ab/nsp3975A975TGctAct33B.10.000027
ORF1ab/nsp3975A975AgcTgcC33B.1.1.630.001157
ORF1ab/nsp3975A975TGctAct23B.1.1.70.000002
ORF1ab/nsp3975A975TGcTAcA13B.1.1.70.000001
ORF1ab/nsp3975A975VgCtgTt33P.10.000047
ORF1ab/nsp3975A975SGcTTcA13P.10.000016
ORF1ab/nsp3975A975SGCtAGt13P.10.000016
ORF1ab/nsp3975A975SGctTct13P.10.000016
ORF1ab/nsp3975A975LGCTTTA22All0
ORF1ab/nsp3975A975CGCtTGt22All0
ORF1ab/nsp3975A975FGCtTTt22All0
ORF1ab/nsp3975A975del1gcTgc-22All0
ORF1ab/nsp3975A975KGCTAAA22All0
ORF1ab/nsp3975A975VgCtgTt22AY.1030.000012
ORF1ab/nsp3975A975VgCtgTt22AY.1100.000225
ORF1ab/nsp3975A975AgcTgcC22AY.1190.000071
ORF1ab/nsp3975A975AgcTgcC22AY.240.000862
ORF1ab/nsp3975A975TGctAct22AY.250.000012
ORF1ab/nsp3975A975AgcTgcC22AY.430.000009
ORF1ab/nsp3975A975VgCtgTt22AY.450.000243
ORF1ab/nsp3975A975VgCTgTA12AY.50.000021
ORF1ab/nsp3975A975VgCtgTt12AY.50.000021
ORF1ab/nsp3975A975AgcTgcC22AY.700.000417
ORF1ab/nsp3975A975AgcTgcC22AY.750.000112
ORF1ab/nsp3975A975AgcTgcC22B.10.000018
ORF1ab/nsp3975A975SGctTct22B.10.000018
ORF1ab/nsp3975A975VgCtgTt22B.1.10.000036
ORF1ab/nsp3975A975LGCTTTA22B.1.1.70.000002
ORF1ab/nsp3975A975NGCtAAt22B.1.1.70.000002
ORF1ab/nsp3975A975FGCtTTt22B.1.1.70.000002
ORF1ab/nsp3975A975del1gcTgc-22B.1.1.70.000002
ORF1ab/nsp3975A975KGCTAAA22B.1.1.70.000002
ORF1ab/nsp3975A975XGCTTGA12B.1.1.70.000001
ORF1ab/nsp3975A975XGCTTAA12B.1.1.70.000001
ORF1ab/nsp3975A975VgCtgTt22B.1.1260.002551
ORF1ab/nsp3975A975AgcTgcC22B.1.177.350.001382
ORF1ab/nsp3975A975DgCtgAt22B.1.20.000018
ORF1ab/nsp3975A975SGctTct22B.1.20.000018
ORF1ab/nsp3975A975VgCtgTt22B.1.2430.000139
ORF1ab/nsp3975A975delGCT---22B.1.360.000292
ORF1ab/nsp3975A975AgcTgcC22B.1.466.20.000782
ORF1ab/nsp3975A975AgcTgcC22B.1.5760.001813
ORF1ab/nsp3975A975AgcTgcC22B.1.5960.000174
ORF1ab/nsp3975A975SGctTct22B.1.617.20.000008
ORF1ab/nsp3975A975AgcTgcC22B.1.617.30.00597
ORF1ab/nsp3975A975SGctTct22D.20.00015
ORF1ab/nsp3975A975TGcTAcA12P.10.000016
ORF1ab/nsp3975A975TGctAct12P.10.000016
ORF1ab/nsp3975A975PGctCct11A0.000387
ORF1ab/nsp3975A975delGCT---11A.2.20.001689
ORF1ab/nsp3975A975YGCtTAt11All0
ORF1ab/nsp3975A975EgCTgAA11All0
ORF1ab/nsp3975A975AgcTgcC11AY.100.00053
ORF1ab/nsp3975A975VgCtgTt11AY.1000.000046
ORF1ab/nsp3975A975SGctTct11AY.1000.000046
ORF1ab/nsp3975A975VgCtgTt11AY.1020.000027
ORF1ab/nsp3975A975SGctTct11AY.1030.000006
ORF1ab/nsp3975A975VgCtgTt11AY.1040.001984
ORF1ab/nsp3975A975AgcTgcC11AY.1100.000113
ORF1ab/nsp3975A975VgCtgTt11AY.1110.000183
ORF1ab/nsp3975A975VgCtgTt11AY.116.10.000311
ORF1ab/nsp3975A975VgCtgTt11AY.1200.000037
ORF1ab/nsp3975A975VgCtgTt11AY.200.000039
ORF1ab/nsp3975A975AgcTgcC11AY.230.00007
ORF1ab/nsp3975A975RGCtCGt11AY.250.000006
ORF1ab/nsp3975A975AgcTgcC11AY.30.00001
ORF1ab/nsp3975A975AgcTgcC11AY.320.000532
ORF1ab/nsp3975A975VgCtgTt11AY.340.000097
ORF1ab/nsp3975A975delGCT---11AY.350.000233
ORF1ab/nsp3975A975AgcTgcC11AY.390.000025
ORF1ab/nsp3975A975VgCtgTt11AY.390.000025
ORF1ab/nsp3975A975VgCtgTt11AY.39.10.00004
ORF1ab/nsp3975A975PGctCct11AY.40.000002
ORF1ab/nsp3975A975AgcTgcC11AY.4.40.000409
ORF1ab/nsp3975A975VgCtgTt11AY.420.00004
ORF1ab/nsp3975A975SGctTct11AY.430.000004
ORF1ab/nsp3975A975SGctTct11AY.450.000122
ORF1ab/nsp3975A975delGCT---11AY.460.000104
ORF1ab/nsp3975A975PGctCct11AY.460.000104
ORF1ab/nsp3975A975SGctTct11AY.460.000104
ORF1ab/nsp3975A975AgcTgcC11AY.46.10.001027
ORF1ab/nsp3975A975SGctTct11AY.690.000187
ORF1ab/nsp3975A975delGCT---11AY.710.000475
ORF1ab/nsp3975A975delGCT---11AY.75.10.00018
ORF1ab/nsp3975A975AgcTgcG11AY.840.000437
ORF1ab/nsp3975A975AgcTgcC11AY.920.000287
ORF1ab/nsp3975A975AgcTgcC11AY.930.000273
ORF1ab/nsp3975A975VgCtgTt11AY.98.10.000048
ORF1ab/nsp3975A975NGCtAAt11B.10.000009
ORF1ab/nsp3975A975SGctTct11B.1.10.000018
ORF1ab/nsp3975A975VgCtgTt11B.1.1.10.000327
ORF1ab/nsp3975A975delGCT---11B.1.1.1420.017544
ORF1ab/nsp3975A975VgCtgTt11B.1.1.2140.000055
ORF1ab/nsp3975A975AgcTgcC11B.1.1.280.000311
ORF1ab/nsp3975A975AgcTgcC11B.1.1.2940.001266
ORF1ab/nsp3975A975delGCT---11B.1.1.3150.008475
ORF1ab/nsp3975A975AgcTgcC11B.1.1.4210.030303
ORF1ab/nsp3975A975SGctTct11B.1.1.500.000679
ORF1ab/nsp3975A975AgcTgcC11B.1.1.5190.00004
ORF1ab/nsp3975A975PGctCct11B.1.1.70.000001
ORF1ab/nsp3975A975EgCTgAA11B.1.1.70.000001
ORF1ab/nsp3975A975DgCtgAt11B.1.1.70.000001
ORF1ab/nsp3975A975YGCtTAt11B.1.1.70.000001
ORF1ab/nsp3975A975RGCTAGA11B.1.1.70.000001
ORF1ab/nsp3975A975CGCtTGt11B.1.1.70.000001
ORF1ab/nsp3975A975VgCtgTt11B.1.1050.009615
ORF1ab/nsp3975A975SGctTct11B.1.130.002375
ORF1ab/nsp3975A975VgCtgTt11B.1.1600.000031
ORF1ab/nsp3975A975AgcTgcC11B.1.1600.000031
ORF1ab/nsp3975A975VgCtgTt11B.1.160.90.007194
ORF1ab/nsp3975A975SGctTct11B.1.1770.000013
ORF1ab/nsp3975A975PGctCct11B.1.177.40.000211
ORF1ab/nsp3975A975AgcTgcC11B.1.177.440.000519
ORF1ab/nsp3975A975TGctAct11B.1.177.570.000281
ORF1ab/nsp3975A975AgcTgcC11B.1.177.630.002703
ORF1ab/nsp3975A975DgCtgAt11B.1.177.730.000566
ORF1ab/nsp3975A975AgcTgcC11B.1.177.860.000183
ORF1ab/nsp3975A975GgCtgGt11B.1.1940.04
ORF1ab/nsp3975A975VgCtgTt11B.1.221.40.004167
ORF1ab/nsp3975A975AgcTgcC11B.1.2390.001221
ORF1ab/nsp3975A975AgcTgcC11B.1.2400.000216
ORF1ab/nsp3975A975DgCtgAt11B.1.2430.00007
ORF1ab/nsp3975A975PGctCct11B.1.2430.00007
ORF1ab/nsp3975A975IGCTATC11B.1.2580.000067
ORF1ab/nsp3975A975SGctTct11B.1.258.170.000104
ORF1ab/nsp3975A975delGCT---11B.1.3190.003049
ORF1ab/nsp3975A975SGctTct11B.1.360.000146
ORF1ab/nsp3975A975AgcTgcC11B.1.360.000146
ORF1ab/nsp3975A975GgCtgGt11B.1.360.000146
ORF1ab/nsp3975A975AgcTgcC11B.1.36.360.000602
ORF1ab/nsp3975A975AgcTgcC11B.1.4040.001302
ORF1ab/nsp3975A975VgCtgTt11B.1.4660.023256
ORF1ab/nsp3975A975AgcTgcC11B.1.5090.000866
ORF1ab/nsp3975A975VgCtgTt11B.1.5250.000113
ORF1ab/nsp3975A975AgcTgcC11B.1.5260.000024
ORF1ab/nsp3975A975VgCtgTt11B.1.5510.00129
ORF1ab/nsp3975A975TGctAct11B.1.5610.000397
ORF1ab/nsp3975A975VgCtgTt11B.1.5750.000303
ORF1ab/nsp3975A975TGctAct11B.1.5760.000907
ORF1ab/nsp3975A975SGctTct11B.1.5960.000087
ORF1ab/nsp3975A975VgCtgTt11B.1.5960.000087
ORF1ab/nsp3975A975VgCtgTt11B.1.617.10.000129
ORF1ab/nsp3975A975delGCT---11B.1.617.20.000004
ORF1ab/nsp3975A975SGctTct11B.1.6180.004032
ORF1ab/nsp3975A975AgcTgcC11B.1.6280.000352
ORF1ab/nsp3975A975delGCT---11B.150.017544
ORF1ab/nsp3975A975AgcTgcC11C.350.000774
ORF1ab/nsp3975A975delGCT---11C.370.000116
ORF1ab/nsp3975A975AgcTgcC11C.370.000116
ORF1ab/nsp3975A975SGctTct11C.370.000116
ORF1ab/nsp3975A975CGCtTGt11P.10.000016
ORF1ab/nsp3975A975XGCTTGA11P.10.000016
ORF1ab/nsp3975A975RGCTAGA11P.10.000016
ORF1ab/nsp3975A975AgcTgcC11P.1.140.000048
ORF1ab/nsp3975A975VgCtgTt11P.20.000187
ORF1ab/nsp3975A975PGctCct11Q.20.000613