CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 970 | T970T | T1788T | syn | acG | acT | 43273 | 42692 | 0.986574 | 5627-5629 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 42692 | 43273 | All | 0.008165 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 30161 | 30161 | B.1.160 | 0.94065 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1927 | 1928 | AY.6 | 0.079255 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 893 | 893 | B.1.160.16 | 0.829926 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 768 | 768 | B.1.160.8 | 0.989691 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 672 | 724 | B.1.1 | 0.012191 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 585 | 585 | B.1.160.17 | 0.994898 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 481 | 481 | B.1.160.7 | 1 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 471 | 475 | B.1 | 0.004314 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 407 | 407 | B.1.160.14 | 0.862288 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 334 | 380 | B.1.1.7 | 0.000299 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 365 | 365 | B.1.160.26 | 0.883777 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 326 | 326 | B.1.160.28 | 0.953216 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 292 | 292 | AY.57 | 0.191601 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 204 | 245 | AY.4 | 0.000318 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 218 | 234 | B.1.617.2 | 0.000821 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 225 | 225 | B.1.160.24 | 0.995575 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 225 | 225 | B.1.160.33 | 0.995575 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 207 | 207 | B.1.160.23 | 1 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 24 | 203 | AY.46.6 | 0.001733 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 203 | 203 | B.1.160.29 | 0.85654 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 181 | 181 | AY.33 | 0.012087 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 179 | 179 | B.1.160.30 | 0.532738 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 171 | 171 | B.1.160.32 | 0.733906 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 168 | 168 | B.1.160.15 | 0.831683 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 141 | 141 | B.1.160.11 | 0.805714 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 139 | 139 | B.1.160.12 | 0.891026 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 137 | 137 | B.1.160.18 | 1 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 130 | 130 | B.1.160.22 | 0.878378 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 127 | 127 | B.1.160.9 | 0.913669 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 122 | 122 | AB.1 | 1 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 109 | 120 | AY.44 | 0.000663 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 109 | 109 | B.1.160.10 | 0.879032 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 106 | 106 | B.1.160.31 | 0.854839 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 92 | 105 | P.1 | 0.001449 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 94 | 94 | R.1 | 0.008461 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 67 | 90 | AY.102 | 0.001776 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 79 | 90 | AY.43 | 0.00035 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 90 | 90 | B.1.160.25 | 1 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 72 | 75 | B.1.177 | 0.000948 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 37 | 74 | AY.39 | 0.000914 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 72 | 72 | B.1.221 | 0.005114 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 68 | 68 | B.1.160.20 | 0.607143 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 66 | 66 | B.1.160.27 | 1 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 60 | 61 | AY.25 | 0.000361 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 39 | 47 | B.1.2 | 0.000343 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 45 | 45 | C.36 | 0.040984 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 43 | 44 | AY.103 | 0.000267 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 41 | 41 | B.1.160.21 | 0.836735 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 39 | 39 | AY.108 | 0.042999 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 36 | 36 | B.1.160.13 | 1 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 2 | 35 | D.2 | 0.00015 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 34 | 34 | B.1.177.31 | 0.390805 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 32 | 32 | B.1.177.44 | 0.016606 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 26 | 29 | B.1.526 | 0.000611 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 24 | 24 | B.1.160.19 | 0.857143 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 18 | 23 | B.1.243 | 0.001253 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 22 | 22 | B.1.1.445 | 0.814815 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 22 | 22 | B.1.530 | 0.157143 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 20 | 20 | AY.3 | 0.000199 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 20 | 20 | B.1.395 | 0.140845 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 18 | 18 | AY.113 | 0.002563 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 18 | 18 | B.1.1.39 | 0.009174 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 18 | 18 | B.1.258.11 | 0.007134 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 17 | 17 | B.1.240 | 0.003665 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 15 | 16 | B.1.427 | 0.000757 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 15 | 15 | B.1.429 | 0.000353 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 10 | 14 | AY.20 | 0.000389 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 13 | 13 | B.1.177.45 | 0.004956 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 13 | 13 | B.1.628 | 0.004581 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 12 | 12 | B.1.142 | 0.034783 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 12 | 12 | B.1.177.43 | 0.017725 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 11 | 12 | B.1.621 | 0.000974 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 9 | 12 | P.1.14 | 0.00043 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 10 | 11 | AY.5 | 0.000206 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 9 | 10 | AY.23 | 0.000628 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 10 | 10 | AY.42 | 0.000402 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 3 | 9 | AY.26 | 0.000085 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 9 | 9 | B.1.1.419 | 0.066667 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 8 | 9 | B.1.1.518 | 0.050633 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 9 | 9 | B.1.620 | 0.008515 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 9 | 9 | P.1.12 | 0.004356 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 8 | 8 | B | 0.001022 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 8 | 8 | B.1.1.136 | 0.170213 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 8 | 8 | B.1.1.216 | 0.007124 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 6 | 8 | B.1.1.519 | 0.000238 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 8 | 8 | B.1.509 | 0.006926 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 7 | 7 | AY.13 | 0.001127 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 2 | 7 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 7 | 7 | AY.61 | 0.000733 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 7 | 7 | AY.98 | 0.000553 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 7 | 7 | AY.98.1 | 0.000339 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 3 | 7 | B.1.1.284 | 0.000322 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 7 | 7 | B.1.36 | 0.001021 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 7 | 7 | B.1.561 | 0.002779 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 6 | 6 | AY.110 | 0.000676 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 5 | 6 | AY.119 | 0.000177 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 5 | 6 | AY.54 | 0.000477 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 6 | 6 | AY.75 | 0.000336 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 5 | 6 | B.1.258 | 0.000333 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 6 | 6 | B.1.396 | 0.004234 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 5 | 5 | B.1.1.200 | 0.037313 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 5 | 5 | B.1.1.70 | 0.001705 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 5 | 5 | B.1.473 | 0.096154 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 5 | 5 | B.1.617.1 | 0.000645 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 3 | 4 | AY.117 | 0.000254 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 4 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 3 | 4 | AY.45 | 0.000365 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 3 | 4 | AY.46 | 0.000312 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 4 | 4 | AY.7.1 | 0.000451 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 4 | 4 | AY.92 | 0.001149 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 4 | 4 | B.1.1.372 | 0.002755 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 4 | 4 | B.1.1.93 | 0.102564 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 4 | 4 | B.1.177.57 | 0.001124 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 4 | 4 | B.1.177.73 | 0.002265 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 4 | 4 | B.1.465 | 0.015209 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 4 | 4 | C.27 | 0.074074 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 4 | 4 | C.35 | 0.003096 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 3 | 4 | C.37 | 0.000348 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 3 | 3 | AY.1 | 0.001187 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 3 | 3 | AY.101 | 0.001471 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 2 | 3 | AY.120.2.1 | 0.000997 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 3 | 3 | AY.28 | 0.005671 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 3 | 3 | AY.5.3 | 0.001012 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 3 | 3 | AY.55 | 0.002752 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 3 | 3 | AY.60 | 0.002814 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 3 | 3 | B.1.1.273 | 0.02027 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 2 | 3 | B.1.1.317 | 0.000823 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 3 | 3 | B.1.177.23 | 0.009709 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 3 | 3 | B.1.260 | 0.010033 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 2 | 3 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 3 | 3 | B.1.36.8 | 0.003 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 3 | 3 | B.1.409 | 0.002344 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 3 | 3 | B.1.416.1 | 0.004687 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 2 | 3 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 3 | 3 | B.1.609 | 0.001438 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 2 | 3 | P.2 | 0.000373 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 2 | 2 | A | 0.000774 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 2 | 2 | AY.105 | 0.001286 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 2 | 2 | AY.107 | 0.000932 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 2 | 2 | AY.40 | 0.001929 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 2 | 2 | AY.53 | 0.000575 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 2 | 2 | AY.58 | 0.001815 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 2 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 2 | 2 | AY.77 | 0.002255 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 2 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 2 | 2 | B.1.1.241 | 0.004141 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 2 | 2 | B.1.1.277 | 0.001517 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 2 | 2 | B.1.1.374 | 0.004751 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 2 | 2 | B.1.164 | 0.029851 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 2 | 2 | B.1.177.10 | 0.001756 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 2 | 2 | B.1.177.50 | 0.00939 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 2 | 2 | B.1.177.87 | 0.001456 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 2 | 2 | B.1.206 | 0.001631 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 2 | 2 | B.1.36.1 | 0.002281 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 2 | 2 | B.1.462 | 0.014493 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 2 | 2 | B.1.468 | 0.011429 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 2 | 2 | B.1.576 | 0.001813 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 2 | 2 | B.6 | 0.00182 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | AN.1 | 0.02 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.1.243 | 0.004082 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.1.304 | 0.002809 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.1.343 | 0.020833 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.115 | 0.021739 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.124 | 0.007812 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.268 | 0.010417 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.333 | 0.010526 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.378 | 0.006849 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.438 | 0.006536 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.460 | 0.017857 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.467 | 0.04 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.542 | 0.03125 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.11 | 0.005128 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.52 | 0.010101 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp3 | 970 | T970T | acG | acT | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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