CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 955 & Codon = acT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3955T955TT1773TsynacAacT22253221750.009773885582-5584

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3955T955TacAacT2175222532All0.000416
ORF1ab/nsp3955T955TacAacT7532989AY.260.002123
ORF1ab/nsp3955T955TacAacT1530464AY.470.000467
ORF1ab/nsp3955T955TacAacT5221960AY.9.20.00191
ORF1ab/nsp3955T955TacAacT1116164AY.750.000616
ORF1ab/nsp3955T955TacAacT515416AY.270.000324
ORF1ab/nsp3955T955TacAacT2414538AY.90.001622
ORF1ab/nsp3955T955TacAacT711480AY.9.10.000586
ORF1ab/nsp3955T955TacAacT21910816B.1.617.20.000825
ORF1ab/nsp3955T955TacAacT1988218AY.610.020746
ORF1ab/nsp3955T955TacAacT48205AY.740.000463
ORF1ab/nsp3955T955TacAacT15050AY.690.000187
ORF1ab/nsp3955T955TacAacT484782AY.75.10.008655
ORF1ab/nsp3955T955TacAacT44536AY.700.000834
ORF1ab/nsp3955T955TacAacT62844AY.370.001896
ORF1ab/nsp3955T955TacAacT42656AY.680.001095
ORF1ab/nsp3955T955TacAacT12211AY.240.000431
ORF1ab/nsp3955T955TacAacT21866AY.670.000929
ORF1ab/nsp3955T955TacAacT41864AY.620.001743
ORF1ab/nsp3955T955TacAacT51749AY.710.002375
ORF1ab/nsp3955T955TacAacT11633AY.100.00053
ORF1ab/nsp3955T955TacAacT21530AY.380.000999
ORF1ab/nsp3955T955TacAacT21430AY.590.001059
ORF1ab/nsp3955T955TacAacT14001404AY.570.918635
ORF1ab/nsp3955T955TacAacT25961AY.600.023452
ORF1ab/nsp3955T955TacAacT2691AY.720.002721
ORF1ab/nsp3955T955TacAacT1602AY.440.000006
ORF1ab/nsp3955T955TacAacT24506AY.9.2.10.047431
ORF1ab/nsp3955T955TacAacT4476AY.550.00367
ORF1ab/nsp3955T955TacAacT1392AY.560.001605
ORF1ab/nsp3955T955TacAacT2320AY.130.000322
ORF1ab/nsp3955T955TacAacT4305AY.16.10.00188
ORF1ab/nsp3955T955TacAacT4255AY.430.000018
ORF1ab/nsp3955T955TacAacT1179AY.190.00114
ORF1ab/nsp3955T955TacAacT1163AY.390.000025
ORF1ab/nsp3955T955TacAacT197AY.480.000465
ORF1ab/nsp3955T955TacAacT270AY.1100.000225
ORF1ab/nsp3955T955TacAacT270AY.520.001629
ORF1ab/nsp3955T955TacAacT147AY.160.00038
ORF1ab/nsp3955T955TacAacT634AY.1210.000812
ORF1ab/nsp3955T955TacAacT122AY.46.20.000635
ORF1ab/nsp3955T955TacAacT140.055556
ORF1ab/nsp3955T955TacAacT11A0.000387
ORF1ab/nsp3955T955TacAacT11B.1.4340.052632

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.