CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 955

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3955T955TT1773TsynacAacG2225322202560.9897725582-5584
ORF1ab/nsp3955T955TT1773TsynacAacT22253221750.009773885582-5584
ORF1ab/nsp3955T955TT1773TsynacAacC2225321010.0004538675582-5584
ORF1ab/nsp3955T955IT1773InonsynaCaaTa50050015582-5584
ORF1ab/nsp3955T955AT1773AnonsynAcaGca2482400.9677425582-5584
ORF1ab/nsp3955T955AT1773AnonsynAcAGcG24870.02822585582-5584
ORF1ab/nsp3955T955AT1773AnonsynAcAGcC24810.004032265582-5584
ORF1ab/nsp3955T955ST1773SnonsynAcaTca69680.9855075582-5584
ORF1ab/nsp3955T955ST1773SnonsynAcATcT6910.01449285582-5584
ORF1ab/nsp3955T955MT1773MnonsynaCAaTG373715582-5584
ORF1ab/nsp3955T955KT1773KnonsynaCaaAa363615582-5584
ORF1ab/nsp3955T955del1T1773del1delacAac-36340.9444445582-5584
ORF1ab/nsp3955T955del1T1773del1delAca-ca3620.05555565582-5584
ORF1ab/nsp3955T955delT1773deldelACA---111115582-5584
ORF1ab/nsp3955T955PT1773PnonsynAcaCca530.65582-5584
ORF1ab/nsp3955T955PT1773PnonsynAcACcC520.45582-5584
ORF1ab/nsp3955T955NT1773NnonsynaCAaAT420.55582-5584
ORF1ab/nsp3955T955NT1773NnonsynaCAaAC420.55582-5584
ORF1ab/nsp3955T955HT1773HnonsynACACAC2215582-5584
ORF1ab/nsp3955T955QT1773QnonsynACaCAa2215582-5584
ORF1ab/nsp3955T955YT1773YnonsynACATAT1115582-5584

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3955T955TacAacG220256222532All0.042127
ORF1ab/nsp3955T955TacAacT2175222532All0.000416
ORF1ab/nsp3955T955TacAacC101222532All0.000019
ORF1ab/nsp3955T955TacAacG3291232989AY.260.931744
ORF1ab/nsp3955T955TacAacT7532989AY.260.002123
ORF1ab/nsp3955T955TacAacC232989AY.260.000057
ORF1ab/nsp3955T955TacAacG3044930464AY.470.947121
ORF1ab/nsp3955T955TacAacT1530464AY.470.000467
ORF1ab/nsp3955T955TacAacG2190821960AY.9.20.804672
ORF1ab/nsp3955T955TacAacT5221960AY.9.20.00191
ORF1ab/nsp3955T955TacAacG1615316164AY.750.90493
ORF1ab/nsp3955T955TacAacT1116164AY.750.000616
ORF1ab/nsp3955T955TacAacG1541115416AY.270.997411
ORF1ab/nsp3955T955TacAacT515416AY.270.000324
ORF1ab/nsp3955T955TacAacG1451414538AY.90.981073
ORF1ab/nsp3955T955TacAacT2414538AY.90.001622
ORF1ab/nsp3955T955TacAacG1147311480AY.9.10.960566
ORF1ab/nsp3955T955TacAacT711480AY.9.10.000586
ORF1ab/nsp3955T955TacAacG1059710816B.1.617.20.039902
ORF1ab/nsp3955T955TacAacT21910816B.1.617.20.000825
ORF1ab/nsp3955T955TacAacG80208218AY.610.840319
ORF1ab/nsp3955T955TacAacT1988218AY.610.020746
ORF1ab/nsp3955T955TacAacG82018205AY.740.948421
ORF1ab/nsp3955T955TacAacT48205AY.740.000463
ORF1ab/nsp3955T955TacAacG50495050AY.690.942505
ORF1ab/nsp3955T955TacAacT15050AY.690.000187
ORF1ab/nsp3955T955TacAacG47344782AY.75.10.853588
ORF1ab/nsp3955T955TacAacT484782AY.75.10.008655
ORF1ab/nsp3955T955TacAacG45324536AY.700.944954
ORF1ab/nsp3955T955TacAacT44536AY.700.000834
ORF1ab/nsp3955T955TacAacG28382844AY.370.896966
ORF1ab/nsp3955T955TacAacT62844AY.370.001896
ORF1ab/nsp3955T955TacAacG27552755AY.20.981125
ORF1ab/nsp3955T955TacAacG26522656AY.680.725979
ORF1ab/nsp3955T955TacAacT42656AY.680.001095
ORF1ab/nsp3955T955TacAacG24522452AY.630.948549
ORF1ab/nsp3955T955TacAacG21412211AY.240.922845
ORF1ab/nsp3955T955TacAacC692211AY.240.029741
ORF1ab/nsp3955T955TacAacT12211AY.240.000431
ORF1ab/nsp3955T955TacAacG18641866AY.670.865367
ORF1ab/nsp3955T955TacAacT21866AY.670.000929
ORF1ab/nsp3955T955TacAacG18601864AY.620.810458
ORF1ab/nsp3955T955TacAacT41864AY.620.001743
ORF1ab/nsp3955T955TacAacG17441749AY.710.828504
ORF1ab/nsp3955T955TacAacT51749AY.710.002375
ORF1ab/nsp3955T955TacAacG16321633AY.100.864865
ORF1ab/nsp3955T955TacAacT11633AY.100.00053
ORF1ab/nsp3955T955TacAacG15281530AY.380.762856
ORF1ab/nsp3955T955TacAacT21530AY.380.000999
ORF1ab/nsp3955T955TacAacG15101510AY.650.804904
ORF1ab/nsp3955T955TacAacG14281430AY.590.756356
ORF1ab/nsp3955T955TacAacT21430AY.590.001059
ORF1ab/nsp3955T955TacAacG14261426AY.640.84881
ORF1ab/nsp3955T955TacAacT14001404AY.570.918635
ORF1ab/nsp3955T955TacAacG41404AY.570.002625
ORF1ab/nsp3955T955TacAacG936961AY.600.878049
ORF1ab/nsp3955T955TacAacT25961AY.600.023452
ORF1ab/nsp3955T955TacAacG854854AY.660.913369
ORF1ab/nsp3955T955TacAacG819819AY.730.54491
ORF1ab/nsp3955T955TacAacG745745AY.580.676044
ORF1ab/nsp3955T955TacAacG691691AY.110.925033
ORF1ab/nsp3955T955TacAacG689691AY.720.937415
ORF1ab/nsp3955T955TacAacT2691AY.720.002721
ORF1ab/nsp3955T955TacAacG601602AY.440.003658
ORF1ab/nsp3955T955TacAacT1602AY.440.000006
ORF1ab/nsp3955T955TacAacG482506AY.9.2.10.952569
ORF1ab/nsp3955T955TacAacT24506AY.9.2.10.047431
ORF1ab/nsp3955T955IaCaaTa500500All0.000096
ORF1ab/nsp3955T955TacAacG472476AY.550.433028
ORF1ab/nsp3955T955TacAacT4476AY.550.00367
ORF1ab/nsp3955T955TacAacG467467AY.280.882798
ORF1ab/nsp3955T955TacAacG391392AY.560.627608
ORF1ab/nsp3955T955TacAacT1392AY.560.001605
ORF1ab/nsp3955T955TacAacG318320AY.130.051191
ORF1ab/nsp3955T955TacAacT2320AY.130.000322
ORF1ab/nsp3955T955TacAacG301305AY.16.10.141447
ORF1ab/nsp3955T955TacAacT4305AY.16.10.00188
ORF1ab/nsp3955T955TacAacG248255AY.430.001099
ORF1ab/nsp3955T955TacAacT4255AY.430.000018
ORF1ab/nsp3955T955TacAacC3255AY.430.000013
ORF1ab/nsp3955T955AAcaGca240248All0.000046
ORF1ab/nsp3955T955AAcAGcG7248All0.000001
ORF1ab/nsp3955T955AAcAGcC1248All0
ORF1ab/nsp3955T955TacAacG178179AY.190.202965
ORF1ab/nsp3955T955TacAacT1179AY.190.00114
ORF1ab/nsp3955T955TacAacG162163AY.390.004003
ORF1ab/nsp3955T955TacAacT1163AY.390.000025
ORF1ab/nsp3955T955TacAacG140141AY.1030.000869
ORF1ab/nsp3955T955TacAacC1141AY.1030.000006
ORF1ab/nsp3955T955AAcaGca132132AY.250.000794
ORF1ab/nsp3955T955TacAacG121121AY.250.000728
ORF1ab/nsp3955T955TacAacG117117AY.200.004547
ORF1ab/nsp3955T955TacAacG105105B.10.000962
ORF1ab/nsp3955T955TacAacG9697AY.480.044651
ORF1ab/nsp3955T955TacAacT197AY.480.000465
ORF1ab/nsp3955T955TacAacG8888AY.1130.01253
ORF1ab/nsp3955T955IaCaaTa8787B.1.1.70.000078
ORF1ab/nsp3955T955TacAacG7575AY.540.007151
ORF1ab/nsp3955T955TacAacG6870AY.1100.007663
ORF1ab/nsp3955T955TacAacT270AY.1100.000225
ORF1ab/nsp3955T955TacAacG6870AY.520.055375
ORF1ab/nsp3955T955TacAacT270AY.520.001629
ORF1ab/nsp3955T955SAcaTca6869All0.000013
ORF1ab/nsp3955T955SAcATcT169All0
ORF1ab/nsp3955T955IaCaaTa6161AY.30.000607
ORF1ab/nsp3955T955TacAacG5555AY.1170.004648
ORF1ab/nsp3955T955TacAacG5353AY.450.006449
ORF1ab/nsp3955T955SAcaTca5050B.1.1.70.000045
ORF1ab/nsp3955T955TacAacG4647AY.160.017464
ORF1ab/nsp3955T955TacAacT147AY.160.00038
ORF1ab/nsp3955T955TacAacG4545AY.98.10.002179
ORF1ab/nsp3955T955TacAacG3245B.1.20.000282
ORF1ab/nsp3955T955TacAacC1345B.1.20.000114
ORF1ab/nsp3955T955TacAacG4242AY.120.20.053985
ORF1ab/nsp3955T955IaCaaTa4242AY.250.000253
ORF1ab/nsp3955T955TacAacG3939AY.210.074004
ORF1ab/nsp3955T955TacAacG3939AY.930.01065
ORF1ab/nsp3955T955TacAacG3939AY.980.003081
ORF1ab/nsp3955T955MaCAaTG3737All0.000007
ORF1ab/nsp3955T955TacAacG3537B.1.1.70.000031
ORF1ab/nsp3955T955TacAacC237B.1.1.70.000002
ORF1ab/nsp3955T955KaCaaAa3636All0.000007
ORF1ab/nsp3955T955del1acAac-3436All0.000007
ORF1ab/nsp3955T955del1Aca-ca236All0
ORF1ab/nsp3955T955AAcaGca3636P.1.100.009701
ORF1ab/nsp3955T955TacAacG3535AY.320.018637
ORF1ab/nsp3955T955IaCaaTa3434AY.1030.000211
ORF1ab/nsp3955T955TacAacG2834AY.1210.003789
ORF1ab/nsp3955T955TacAacT634AY.1210.000812
ORF1ab/nsp3955T955TacAacG3133AY.1180.001942
ORF1ab/nsp3955T955TacAacC233AY.1180.000125
ORF1ab/nsp3955T955TacAacG3333B0.004218
ORF1ab/nsp3955T955IaCaaTa3232AY.40.00005
ORF1ab/nsp3955T955IaCaaTa3232B.1.617.20.00012
ORF1ab/nsp3955T955TacAacG3030AY.1000.00138
ORF1ab/nsp3955T955TacAacG3030AY.1050.019293
ORF1ab/nsp3955T955TacAacG2929AY.4.2.10.004321
ORF1ab/nsp3955T955TacAacG2828AY.30.000278
ORF1ab/nsp3955T955del1acAac-2424AY.610.002515
ORF1ab/nsp3955T955TacAacG2424B.1.1600.000749
ORF1ab/nsp3955T955TacAacG2223AY.1190.000777
ORF1ab/nsp3955T955TacAacC123AY.1190.000035
ORF1ab/nsp3955T955TacAacG2323AY.40.000036
ORF1ab/nsp3955T955TacAacG2323AY.770.02593
ORF1ab/nsp3955T955IaCaaTa2222AY.430.000097
ORF1ab/nsp3955T955TacAacG2122AY.46.20.013342
ORF1ab/nsp3955T955TacAacT122AY.46.20.000635
ORF1ab/nsp3955T955TacAacG2121AY.460.002186
ORF1ab/nsp3955T955TacAacG2121AY.5.30.007085
ORF1ab/nsp3955T955TacAacG2121AY.500.016787
ORF1ab/nsp3955T955TacAacG1818AY.230.001255
ORF1ab/nsp3955T955IaCaaTa1717AY.440.000103
ORF1ab/nsp3955T955IaCaaTa1717B.1.20.00015
ORF1ab/nsp3955T955IaCaaTa1616AY.300.006332
ORF1ab/nsp3955T955TacAacG1616AY.330.001068
ORF1ab/nsp3955T955IaCaaTa1616B.1.3690.004564
ORF1ab/nsp3955T955TacAacG1515AY.530.004313
ORF1ab/nsp3955T955TacAacG1515AY.860.012448
ORF1ab/nsp3955T955MaCAaTG1414AY.9.20.000514
ORF1ab/nsp3955T955AAcaGca1414B.1.617.20.000053
ORF1ab/nsp3955T955KaCaaAa1414B.1.617.20.000053
ORF1ab/nsp3955T955TacAacG1313AY.10.005144
ORF1ab/nsp3955T955TacAacG1313AY.880.011494
ORF1ab/nsp3955T955TacAacG1313B.1.1770.000171
ORF1ab/nsp3955T955MaCAaTG1212AY.260.00034
ORF1ab/nsp3955T955TacAacG1212AY.50.000248
ORF1ab/nsp3955T955TacAacG1212AY.910.008766
ORF1ab/nsp3955T955delACA---1111All0.000002
ORF1ab/nsp3955T955TacAacG1111AY.1160.003155
ORF1ab/nsp3955T955TacAacG1011AY.920.002873
ORF1ab/nsp3955T955TacAacC111AY.920.000287
ORF1ab/nsp3955T955IaCaaTa1111B.1.1770.000145
ORF1ab/nsp3955T955TacAacG1010AY.1080.011025
ORF1ab/nsp3955T955TacAacG1010AY.1140.002311
ORF1ab/nsp3955T955KaCaaAa1010AY.430.000044
ORF1ab/nsp3955T955TacAacG1010AY.46.60.000722
ORF1ab/nsp3955T955IaCaaTa1010B.1.4220.008123
ORF1ab/nsp3955T955TacAacG99AY.39.10.000357
ORF1ab/nsp3955T955TacAacG99AY.46.10.00924
ORF1ab/nsp3955T955TacAacG88AY.1060.002679
ORF1ab/nsp3955T955AAcaGca88AY.40.000012
ORF1ab/nsp3955T955TacAacG88AY.400.007715
ORF1ab/nsp3955T955TacAacG88AY.870.006661
ORF1ab/nsp3955T955TacAacG88AY.900.005476
ORF1ab/nsp3955T955IaCaaTa88AY.950.006088
ORF1ab/nsp3955T955TacAacG88B.1.10.000145
ORF1ab/nsp3955T955TacAacG77AY.1020.000186
ORF1ab/nsp3955T955TacAacG77AY.1200.00026
ORF1ab/nsp3955T955AAcAGcG77AY.260.000198
ORF1ab/nsp3955T955TacAacG77AY.300.00277
ORF1ab/nsp3955T955IaCaaTa77B.1.4290.000165
ORF1ab/nsp3955T955AAcaGca77B.1.4290.000165
ORF1ab/nsp3955T955IaCaaTa66AY.1020.000159
ORF1ab/nsp3955T955TacAacG66AY.290.000095
ORF1ab/nsp3955T955IaCaaTa66AY.290.000095
ORF1ab/nsp3955T955TacAacG66AY.420.000241
ORF1ab/nsp3955T955AAcaGca66AY.440.000037
ORF1ab/nsp3955T955TacAacG66AY.490.019169
ORF1ab/nsp3955T955TacAacG66AY.810.011952
ORF1ab/nsp3955T955AAcaGca66B.1.1.70.000005
ORF1ab/nsp3955T955TacAacG66B.1.3610.007732
ORF1ab/nsp3955T955PAcaCca35All0.000001
ORF1ab/nsp3955T955PAcACcC25All0
ORF1ab/nsp3955T955TacAacG55AY.1090.003698
ORF1ab/nsp3955T955IaCaaTa55AY.1200.000186
ORF1ab/nsp3955T955AAcaGca55AY.30.00005
ORF1ab/nsp3955T955MaCAaTG55AY.750.00028
ORF1ab/nsp3955T955TacAacG55AY.950.003805
ORF1ab/nsp3955T955IaCaaTa55B.1.10.000091
ORF1ab/nsp3955T955TacAacC240.111111
ORF1ab/nsp3955T955TacAacG140.055556
ORF1ab/nsp3955T955TacAacT140.055556
ORF1ab/nsp3955T955NaCAaAT24All0
ORF1ab/nsp3955T955NaCAaAC24All0
ORF1ab/nsp3955T955IaCaaTa44AY.1190.000141
ORF1ab/nsp3955T955TacAacG44AY.120.001264
ORF1ab/nsp3955T955TacAacG44AY.140.000352
ORF1ab/nsp3955T955IaCaaTa44AY.360.000593
ORF1ab/nsp3955T955TacAacG44AY.4.20.000087
ORF1ab/nsp3955T955TacAacG44AY.410.001176
ORF1ab/nsp3955T955SAcaTca44AY.440.000024
ORF1ab/nsp3955T955TacAacG44AY.850.001709
ORF1ab/nsp3955T955IaCaaTa44B.10.000037
ORF1ab/nsp3955T955TacAacG44B.1.617.10.000516
ORF1ab/nsp3955T955del1acAac-44B.1.617.20.000015
ORF1ab/nsp3955T955IaCaaTa44P.10.000063
ORF1ab/nsp3955T955AAcaGca44P.1.140.000191
ORF1ab/nsp3955T955KaCaaAa330.166667
ORF1ab/nsp3955T955IaCaaTa33AY.200.000117
ORF1ab/nsp3955T955AAcaGca33AY.430.000013
ORF1ab/nsp3955T955KaCaaAa33AY.460.000312
ORF1ab/nsp3955T955MaCAaTG33AY.610.000314
ORF1ab/nsp3955T955TacAacG33AY.70.000588
ORF1ab/nsp3955T955SAcaTca33B.1.20.000026
ORF1ab/nsp3955T955TacAacG33B.1.2140.010989
ORF1ab/nsp3955T955TacAacC33B.1.4590.012245
ORF1ab/nsp3955T955IaCaaTa33B.1.466.20.001174
ORF1ab/nsp3955T955SAcaTca33B.1.5760.00272
ORF1ab/nsp3955T955TacAacG33B.1.6370.000219
ORF1ab/nsp3955T955IaCaaTa33C.370.000348
ORF1ab/nsp3955T955NaCAaAT120.055556
ORF1ab/nsp3955T955PAcACcC120.055556
ORF1ab/nsp3955T955PAcaCca120.055556
ORF1ab/nsp3955T955NaCAaAC120.055556
ORF1ab/nsp3955T955AAcAGcC120.055556
ORF1ab/nsp3955T955AAcaGca120.055556
ORF1ab/nsp3955T955HACACAC22All0
ORF1ab/nsp3955T955QACaCAa22All0
ORF1ab/nsp3955T955IaCaaTa22AY.1180.000125
ORF1ab/nsp3955T955TacAacG22AY.170.016393
ORF1ab/nsp3955T955TacAacG22AY.220.004184
ORF1ab/nsp3955T955AAcaGca22AY.330.000134
ORF1ab/nsp3955T955TacAacG22AY.34.10.00102
ORF1ab/nsp3955T955IaCaaTa22AY.390.000049
ORF1ab/nsp3955T955delACA---22AY.40.000003
ORF1ab/nsp3955T955TacAacG22AY.46.40.000329
ORF1ab/nsp3955T955TacAacG22AY.5.40.000553
ORF1ab/nsp3955T955IaCaaTa22AY.510.001818
ORF1ab/nsp3955T955TacAacG22AY.510.001818
ORF1ab/nsp3955T955AAcaGca22AY.520.001629
ORF1ab/nsp3955T955TacAacG22AY.7.20.001119
ORF1ab/nsp3955T955TacAacG22AY.80.001212
ORF1ab/nsp3955T955TacAacG22AY.820.002714
ORF1ab/nsp3955T955del1acAac-22AY.9.20.000073
ORF1ab/nsp3955T955TacAacG22AY.940.000885
ORF1ab/nsp3955T955TacAacG22AY.960.004149
ORF1ab/nsp3955T955AAcaGca22B.1.10.000036
ORF1ab/nsp3955T955IaCaaTa22B.1.1.2160.001781
ORF1ab/nsp3955T955TacAacG22B.1.1.4320.002532
ORF1ab/nsp3955T955IaCaaTa22B.1.1.540.006042
ORF1ab/nsp3955T955IaCaaTa22B.1.177.770.001452
ORF1ab/nsp3955T955PAcaCca12B.1.2210.000071
ORF1ab/nsp3955T955PAcACcC12B.1.2210.000071
ORF1ab/nsp3955T955AAcaGca22B.1.360.000292
ORF1ab/nsp3955T955delACA---22B.1.360.000292
ORF1ab/nsp3955T955TacAacG22B.1.4620.014493
ORF1ab/nsp3955T955TacAacG22B.1.5960.000174
ORF1ab/nsp3955T955TacAacG22B.1.6040.034483
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