CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 954

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3954G954GG1772GsynggCggT12296120420.9793435579-5581
ORF1ab/nsp3954G954GG1772GsynggCggA122962200.0178925579-5581
ORF1ab/nsp3954G954GG1772GsynggCggG12296340.002765135579-5581
ORF1ab/nsp3954G954SG1772SnonsynGgcAgc48460.9583335579-5581
ORF1ab/nsp3954G954SG1772SnonsynGGcTCc4810.02083335579-5581
ORF1ab/nsp3954G954SG1772SnonsynGgCAgT4810.02083335579-5581
ORF1ab/nsp3954G954DG1772DnonsyngGcgAc323215579-5581
ORF1ab/nsp3954G954delG1772deldelGGC---121215579-5581
ORF1ab/nsp3954G954VG1772VnonsyngGcgTc8815579-5581
ORF1ab/nsp3954G954CG1772CnonsynGgcTgc6615579-5581
ORF1ab/nsp3954G954AG1772AnonsyngGcgCc4415579-5581
ORF1ab/nsp3954G954RG1772RnonsynGgCAgA310.3333335579-5581
ORF1ab/nsp3954G954RG1772RnonsynGgCCgT310.3333335579-5581
ORF1ab/nsp3954G954RG1772RnonsynGgcCgc310.3333335579-5581
ORF1ab/nsp3954G954del1G1772del1delggCgg-1115579-5581
ORF1ab/nsp3954G954HG1772HnonsynGGcCAc1115579-5581
ORF1ab/nsp3954G954NG1772NnonsynGGcAAc1115579-5581
ORF1ab/nsp3954G954KG1772KnonsynGGCAAA1115579-5581
ORF1ab/nsp3954G954EG1772EnonsyngGCgAA1115579-5581

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3954G954GggCggT1204212296All0.002303
ORF1ab/nsp3954G954GggCggA22012296All0.000042
ORF1ab/nsp3954G954GggCggG3412296All0.000007
ORF1ab/nsp3954G954GggCggT1058010580B.1.6370.773109
ORF1ab/nsp3954G954GggCggT479485B.10.004387
ORF1ab/nsp3954G954GggCggA5485B.10.000046
ORF1ab/nsp3954G954GggCggG1485B.10.000009
ORF1ab/nsp3954G954GggCggT104182AY.40.000162
ORF1ab/nsp3954G954GggCggA50182AY.40.000078
ORF1ab/nsp3954G954GggCggG28182AY.40.000044
ORF1ab/nsp3954G954GggCggT95153B.1.1.70.000085
ORF1ab/nsp3954G954GggCggA57153B.1.1.70.000051
ORF1ab/nsp3954G954GggCggG1153B.1.1.70.000001
ORF1ab/nsp3954G954GggCggT139139AY.3.10.011851
ORF1ab/nsp3954G954GggCggT103103B.1.1.700.03513
ORF1ab/nsp3954G954GggCggA4586B.1.1770.000593
ORF1ab/nsp3954G954GggCggT4186B.1.1770.00054
ORF1ab/nsp3954G954GggCggT5155B.1.617.20.000192
ORF1ab/nsp3954G954GggCggA455B.1.617.20.000015
ORF1ab/nsp3954G954SGgcAgc4648All0.000009
ORF1ab/nsp3954G954SGgCAgT148All0
ORF1ab/nsp3954G954SGGcTCc148All0
ORF1ab/nsp3954G954GggCggT4242B.1.4270.002121
ORF1ab/nsp3954G954GggCggT3434B.1.10.000617
ORF1ab/nsp3954G954DgGcgAc3232All0.000006
ORF1ab/nsp3954G954GggCggT3031B.1.2210.002131
ORF1ab/nsp3954G954GggCggG131B.1.2210.000071
ORF1ab/nsp3954G954GggCggT2727AY.290.000426
ORF1ab/nsp3954G954GggCggT1820AY.1030.000112
ORF1ab/nsp3954G954GggCggA220AY.1030.000012
ORF1ab/nsp3954G954GggCggA1718AY.260.000481
ORF1ab/nsp3954G954GggCggT118AY.260.000028
ORF1ab/nsp3954G954GggCggT1717AY.1020.000451
ORF1ab/nsp3954G954GggCggT1616B.1.5260.000376
ORF1ab/nsp3954G954GggCggA1214AY.1180.000752
ORF1ab/nsp3954G954GggCggT214AY.1180.000125
ORF1ab/nsp3954G954GggCggT1414B.1.177.70.002308
ORF1ab/nsp3954G954SGgcAgc1313AY.430.000058
ORF1ab/nsp3954G954delGGC---1212All0.000002
ORF1ab/nsp3954G954GggCggT1112AY.440.000067
ORF1ab/nsp3954G954GggCggA112AY.440.000006
ORF1ab/nsp3954G954GggCggT1212B0.001534
ORF1ab/nsp3954G954GggCggT1212B.1.177.60.011719
ORF1ab/nsp3954G954GggCggT1111AY.1190.000388
ORF1ab/nsp3954G954GggCggA1010AY.790.012107
ORF1ab/nsp3954G954GggCggT99AY.250.000054
ORF1ab/nsp3954G954GggCggT99AY.430.00004
ORF1ab/nsp3954G954GggCggT99B.1.20.000079
ORF1ab/nsp3954G954VgGcgTc88All0.000002
ORF1ab/nsp3954G954GggCggT78AY.390.000173
ORF1ab/nsp3954G954GggCggA18AY.390.000025
ORF1ab/nsp3954G954GggCggT88B.1.2580.000532
ORF1ab/nsp3954G954DgGcgAc88B.1.6250.018824
ORF1ab/nsp3954G954GggCggT77AY.30.00007
ORF1ab/nsp3954G954GggCggT77B.1.1.3680.021605
ORF1ab/nsp3954G954SGgcAgc77B.1.177.460.006428
ORF1ab/nsp3954G954GggCggT77B.1.6360.04698
ORF1ab/nsp3954G954GggCggT77P.10.00011
ORF1ab/nsp3954G954CGgcTgc66All0.000001
ORF1ab/nsp3954G954GggCggT66B.1.177.730.003398
ORF1ab/nsp3954G954GggCggT55AY.1000.00023
ORF1ab/nsp3954G954GggCggT45AY.470.000124
ORF1ab/nsp3954G954GggCggA15AY.470.000031
ORF1ab/nsp3954G954GggCggT55B.1.1.5070.043478
ORF1ab/nsp3954G954AgGcgCc44All0.000001
ORF1ab/nsp3954G954SGgcAgc44AY.40.000006
ORF1ab/nsp3954G954DgGcgAc44B.10.000037
ORF1ab/nsp3954G954GggCggT44B.1.1.280.001245
ORF1ab/nsp3954G954GggCggT34B.1.1600.000094
ORF1ab/nsp3954G954GggCggG14B.1.1600.000031
ORF1ab/nsp3954G954GggCggT44B.1.2650.005083
ORF1ab/nsp3954G954GggCggT44B.1.6180.016129
ORF1ab/nsp3954G954GggCggG230.111111
ORF1ab/nsp3954G954GggCggA130.055556
ORF1ab/nsp3954G954RGgCAgA13All0
ORF1ab/nsp3954G954RGgcCgc13All0
ORF1ab/nsp3954G954RGgCCgT13All0
ORF1ab/nsp3954G954GggCggT33AY.100.00159
ORF1ab/nsp3954G954DgGcgAc33AY.1030.000019
ORF1ab/nsp3954G954GggCggT33AY.320.001597
ORF1ab/nsp3954G954GggCggT33AY.330.0002
ORF1ab/nsp3954G954DgGcgAc33AY.430.000013
ORF1ab/nsp3954G954GggCggT33AY.530.000863
ORF1ab/nsp3954G954GggCggT33AY.690.00056
ORF1ab/nsp3954G954GggCggT33B.1.1.5190.000119
ORF1ab/nsp3954G954GggCggT33B.1.3110.000824
ORF1ab/nsp3954G954GggCggT33B.1.36.290.001552
ORF1ab/nsp3954G954GggCggT23B.1.4290.000047
ORF1ab/nsp3954G954GggCggA13B.1.4290.000024
ORF1ab/nsp3954G954GggCggT33B.1.5960.000261
ORF1ab/nsp3954G954GggCggT33D.20.000225
ORF1ab/nsp3954G954SGgcAgc33P.10.000047
ORF1ab/nsp3954G954GggCggT22AY.1200.000074
ORF1ab/nsp3954G954GggCggT22AY.200.000078
ORF1ab/nsp3954G954SGgcAgc22AY.30.00002
ORF1ab/nsp3954G954SGGcTCc12AY.390.000025
ORF1ab/nsp3954G954SGgcAgc12AY.390.000025
ORF1ab/nsp3954G954delGGC---22AY.40.000003
ORF1ab/nsp3954G954CGgcTgc22AY.4.50.000215
ORF1ab/nsp3954G954GggCggT12AY.600.000938
ORF1ab/nsp3954G954GggCggA12AY.600.000938
ORF1ab/nsp3954G954GggCggT22AY.670.000929
ORF1ab/nsp3954G954GggCggT22AY.9.20.000073
ORF1ab/nsp3954G954AgGcgCc22B.1.10.000036
ORF1ab/nsp3954G954GggCggT22B.1.1.3980.006452
ORF1ab/nsp3954G954CGgcTgc22B.1.1.70.000002
ORF1ab/nsp3954G954GggCggT22B.1.160.130.055556
ORF1ab/nsp3954G954DgGcgAc22B.1.1770.000026
ORF1ab/nsp3954G954SGgcAgc22B.1.1770.000026
ORF1ab/nsp3954G954GggCggT22B.1.214.20.001199
ORF1ab/nsp3954G954SGgcAgc22B.1.2210.000142
ORF1ab/nsp3954G954GggCggT22B.1.258.170.000208
ORF1ab/nsp3954G954delGGC---22B.1.360.000292
ORF1ab/nsp3954G954GggCggT22B.1.3750.001639
ORF1ab/nsp3954G954GggCggT22B.1.4130.008511
ORF1ab/nsp3954G954GggCggT12B.1.466.20.000391
ORF1ab/nsp3954G954GggCggA12B.1.466.20.000391
ORF1ab/nsp3954G954GggCggT22B.1.5240.002813
ORF1ab/nsp3954G954GggCggT22B.1.5250.000226
ORF1ab/nsp3954G954GggCggA22B.1.930.001867
ORF1ab/nsp3954G954GggCggT22P.1.170.000324
ORF1ab/nsp3954G954GggCggT22P.1.60.003891
ORF1ab/nsp3954G954EgGCgAA110.055556
ORF1ab/nsp3954G954SGgcAgc110.055556
ORF1ab/nsp3954G954RGgCAgA110.055556
ORF1ab/nsp3954G954DgGcgAc110.055556
ORF1ab/nsp3954G954KGGCAAA110.055556
ORF1ab/nsp3954G954NGGcAAc110.055556
ORF1ab/nsp3954G954VgGcgTc11A0.000387
ORF1ab/nsp3954G954GggCggT11A.10.000282
ORF1ab/nsp3954G954delGGC---11A.2.20.001689
ORF1ab/nsp3954G954NGGcAAc11All0
ORF1ab/nsp3954G954KGGCAAA11All0
ORF1ab/nsp3954G954HGGcCAc11All0
ORF1ab/nsp3954G954del1ggCgg-11All0
ORF1ab/nsp3954G954EgGCgAA11All0
ORF1ab/nsp3954G954del1ggCgg-11AY.1000.000046
ORF1ab/nsp3954G954VgGcgTc11AY.1030.000006
ORF1ab/nsp3954G954SGgCAgT11AY.1030.000006
ORF1ab/nsp3954G954GggCggT11AY.1170.000085
ORF1ab/nsp3954G954RGgCCgT11AY.1190.000035
ORF1ab/nsp3954G954VgGcgTc11AY.230.00007
ORF1ab/nsp3954G954GggCggA11AY.230.00007
ORF1ab/nsp3954G954GggCggA11AY.240.000431
ORF1ab/nsp3954G954VgGcgTc11AY.250.000006
ORF1ab/nsp3954G954DgGcgAc11AY.250.000006
ORF1ab/nsp3954G954GggCggT11AY.270.000065
ORF1ab/nsp3954G954CGgcTgc11AY.270.000065
ORF1ab/nsp3954G954SGgcAgc11AY.330.000067
ORF1ab/nsp3954G954DgGcgAc11AY.39.10.00004
ORF1ab/nsp3954G954GggCggT11AY.420.00004
ORF1ab/nsp3954G954delGGC---11AY.430.000004
ORF1ab/nsp3954G954SGgcAgc11AY.440.000006
ORF1ab/nsp3954G954DgGcgAc11AY.440.000006
ORF1ab/nsp3954G954GggCggT11AY.450.000122
ORF1ab/nsp3954G954GggCggT11AY.460.000104
ORF1ab/nsp3954G954DgGcgAc11AY.470.000031
ORF1ab/nsp3954G954GggCggT11AY.50.000021
ORF1ab/nsp3954G954DgGcgAc11AY.60.000041
ORF1ab/nsp3954G954GggCggT11AY.610.000105
ORF1ab/nsp3954G954GggCggA11AY.710.000475
ORF1ab/nsp3954G954GggCggT11AY.750.000056
ORF1ab/nsp3954G954SGgcAgc11AY.790.001211
ORF1ab/nsp3954G954GggCggA11AY.850.000427
ORF1ab/nsp3954G954GggCggT11AY.860.00083
ORF1ab/nsp3954G954SGgcAgc11AY.9.20.000037
ORF1ab/nsp3954G954GggCggT11AY.980.000079
ORF1ab/nsp3954G954SGgcAgc11AY.98.10.000048
ORF1ab/nsp3954G954DgGcgAc11B0.000128
ORF1ab/nsp3954G954SGgcAgc11B0.000128
ORF1ab/nsp3954G954SGgcAgc11B.10.000009
ORF1ab/nsp3954G954VgGcgTc11B.10.000009
ORF1ab/nsp3954G954CGgcTgc11B.10.000009
ORF1ab/nsp3954G954RGgcCgc11B.10.000009
ORF1ab/nsp3954G954AgGcgCc11B.10.000009
ORF1ab/nsp3954G954delGGC---11B.10.000009
ORF1ab/nsp3954G954delGGC---11B.1.1.1420.017544
ORF1ab/nsp3954G954GggCggT11B.1.1.1570.000913
ORF1ab/nsp3954G954GggCggT11B.1.1.1610.003534
ORF1ab/nsp3954G954GggCggT11B.1.1.3010.001179
ORF1ab/nsp3954G954GggCggA11B.1.1.3060.000438
ORF1ab/nsp3954G954GggCggT11B.1.1.3180.000302
ORF1ab/nsp3954G954GggCggT11B.1.1.3480.000796
ORF1ab/nsp3954G954GggCggT11B.1.1.4360.025641
ORF1ab/nsp3954G954GggCggA11B.1.1.500.000679
ORF1ab/nsp3954G954VgGcgTc11B.1.1.70.000001
ORF1ab/nsp3954G954AgGcgCc11B.1.1.70.000001
ORF1ab/nsp3954G954delGGC---11B.1.1.70.000001
ORF1ab/nsp3954G954GggCggT11B.1.1040.00369
ORF1ab/nsp3954G954DgGcgAc11B.1.140.017544
ORF1ab/nsp3954G954DgGcgAc11B.1.1600.000031
ORF1ab/nsp3954G954GggCggT11B.1.177.570.000281
ORF1ab/nsp3954G954GggCggT11B.1.177.600.000218
ORF1ab/nsp3954G954DgGcgAc11B.1.177.750.001041
ORF1ab/nsp3954G954GggCggA11B.1.177.810.000189
ORF1ab/nsp3954G954VgGcgTc11B.1.20.000009
ORF1ab/nsp3954G954GggCggT11B.1.243.10.022222
ORF1ab/nsp3954G954HGGcCAc11B.1.2580.000067
ORF1ab/nsp3954G954delGGC---11B.1.3190.003049
ORF1ab/nsp3954G954GggCggT11B.1.3360.002439
ORF1ab/nsp3954G954GggCggT11B.1.3500.002933
ORF1ab/nsp3954G954GggCggT11B.1.3510.00003
ORF1ab/nsp3954G954GggCggT11B.1.3560.001727
ORF1ab/nsp3954G954GggCggT11B.1.360.000146
ORF1ab/nsp3954G954GggCggT11B.1.36.190.009259
ORF1ab/nsp3954G954GggCggT11B.1.3620.001541
ORF1ab/nsp3954G954GggCggT11B.1.3690.000285
ORF1ab/nsp3954G954GggCggT11B.1.3960.000706
ORF1ab/nsp3954G954GggCggT11B.1.3990.001934
ORF1ab/nsp3954G954SGgcAgc11B.1.4290.000024
ORF1ab/nsp3954G954DgGcgAc11B.1.4290.000024
ORF1ab/nsp3954G954GggCggA11B.1.5170.000427
ORF1ab/nsp3954G954VgGcgTc11B.1.5260.000024
ORF1ab/nsp3954G954GggCggT11B.1.5770.000687
ORF1ab/nsp3954G954DgGcgAc11B.1.6060.006024
ORF1ab/nsp3954G954GggCggA11B.1.6090.000479
ORF1ab/nsp3954G954SGgcAgc11B.1.617.20.000004
ORF1ab/nsp3954G954GggCggT11B.1.6230.000536
ORF1ab/nsp3954G954delGGC---11B.150.017544
ORF1ab/nsp3954G954delGGC---11B.340.013699
ORF1ab/nsp3954G954GggCggT11C.10.002392
ORF1ab/nsp3954G954GggCggT11C.36.30.000567
ORF1ab/nsp3954G954SGgcAgc11D.20.000075
ORF1ab/nsp3954G954GggCggT11P.1.10.000318
ORF1ab/nsp3954G954SGgcAgc11P.1.140.000048