CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 947

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3947V947VV1765VsyngtAgtG157514500.9206355558-5560
ORF1ab/nsp3947V947VV1765VsyngtAgtT15751080.06857145558-5560
ORF1ab/nsp3947V947VV1765VsyngtAgtC1575170.01079375558-5560
ORF1ab/nsp3947V947IV1765InonsynGtaAta9149130.9989065558-5560
ORF1ab/nsp3947V947IV1765InonsynGtAAtT91410.001094095558-5560
ORF1ab/nsp3947V947LV1765LnonsynGtaTta1351340.9925935558-5560
ORF1ab/nsp3947V947LV1765LnonsynGtACtC13510.007407415558-5560
ORF1ab/nsp3947V947AV1765AnonsyngTagCa282815558-5560
ORF1ab/nsp3947V947delV1765deldelGTA---252515558-5560
ORF1ab/nsp3947V947GV1765GnonsyngTagGa131315558-5560
ORF1ab/nsp3947V947del1V1765del1delGtACt-620.3333335558-5560
ORF1ab/nsp3947V947del1V1765del1delgtAgt-620.3333335558-5560
ORF1ab/nsp3947V947del1V1765del1delGta-ta620.3333335558-5560
ORF1ab/nsp3947V947TV1765TnonsynGTaACa4415558-5560
ORF1ab/nsp3947V947KV1765KnonsynGTaAAa2215558-5560
ORF1ab/nsp3947V947RV1765RnonsynGTaAGa2215558-5560
ORF1ab/nsp3947V947EV1765EnonsyngTagAa2215558-5560
ORF1ab/nsp3947V947SV1765SnonsynGTaTCa210.55558-5560
ORF1ab/nsp3947V947SV1765SnonsynGTATCT210.55558-5560
ORF1ab/nsp3947V947NV1765NnonsynGTAAAT1115558-5560
ORF1ab/nsp3947V947FV1765FnonsynGtATtT1115558-5560
ORF1ab/nsp3947V947del2V1765del2delgTAg--1115558-5560
ORF1ab/nsp3947V947MV1765MnonsynGtAAtG1115558-5560
ORF1ab/nsp3947V947DV1765DnonsyngTAgAT1115558-5560

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3947V947VgtAgtG14501575All0.000277
ORF1ab/nsp3947V947VgtAgtT1081575All0.000021
ORF1ab/nsp3947V947VgtAgtC171575All0.000003
ORF1ab/nsp3947V947IGtaAta913914All0.000175
ORF1ab/nsp3947V947IGtAAtT1914All0
ORF1ab/nsp3947V947VgtAgtG608608B.1.1.700.207367
ORF1ab/nsp3947V947VgtAgtG550550B.1.2210.039068
ORF1ab/nsp3947V947IGtaAta473473B.1.1.70.000423
ORF1ab/nsp3947V947IGtaAta147147AY.40.000229
ORF1ab/nsp3947V947LGtaTta134135All0.000026
ORF1ab/nsp3947V947LGtACtC1135All0
ORF1ab/nsp3947V947IGtaAta8181AY.1030.000503
ORF1ab/nsp3947V947VgtAgtG5274B.1.1.70.000047
ORF1ab/nsp3947V947VgtAgtT2274B.1.1.70.00002
ORF1ab/nsp3947V947VgtAgtG3970AY.1030.000242
ORF1ab/nsp3947V947VgtAgtT3170AY.1030.000192
ORF1ab/nsp3947V947VgtAgtT3636B.1.595.30.947368
ORF1ab/nsp3947V947AgTagCa2828All0.000005
ORF1ab/nsp3947V947LGtaTta2828AY.440.00017
ORF1ab/nsp3947V947VgtAgtG2427B.10.00022
ORF1ab/nsp3947V947VgtAgtC227B.10.000018
ORF1ab/nsp3947V947VgtAgtT127B.10.000009
ORF1ab/nsp3947V947delGTA---2525All0.000005
ORF1ab/nsp3947V947IGtaAta2525B.1.20.00022
ORF1ab/nsp3947V947VgtAgtG2323B.1.1.4160.020814
ORF1ab/nsp3947V947LGtaTta2222AY.1020.000583
ORF1ab/nsp3947V947LGtaTta1818B.1.1.70.000016
ORF1ab/nsp3947V947VgtAgtG1418B.1.617.20.000053
ORF1ab/nsp3947V947VgtAgtT218B.1.617.20.000008
ORF1ab/nsp3947V947VgtAgtC218B.1.617.20.000008
ORF1ab/nsp3947V947LGtaTta1717B.1.1.2160.015138
ORF1ab/nsp3947V947IGtaAta1515B.1.617.20.000056
ORF1ab/nsp3947V947GgTagGa1313All0.000002
ORF1ab/nsp3947V947IGtaAta1313AY.1020.000345
ORF1ab/nsp3947V947IGtaAta1313AY.200.000505
ORF1ab/nsp3947V947VgtAgtG1112B.1.1770.000145
ORF1ab/nsp3947V947VgtAgtT112B.1.1770.000013
ORF1ab/nsp3947V947IGtaAta1011AY.250.00006
ORF1ab/nsp3947V947IGtAAtT111AY.250.000006
ORF1ab/nsp3947V947IGtaAta1010AY.330.000668
ORF1ab/nsp3947V947VgtAgtG910AY.40.000014
ORF1ab/nsp3947V947VgtAgtT110AY.40.000002
ORF1ab/nsp3947V947VgtAgtG1010AY.7.20.005593
ORF1ab/nsp3947V947IGtaAta1010B.1.3510.000297
ORF1ab/nsp3947V947VgtAgtG99AY.390.000222
ORF1ab/nsp3947V947VgtAgtG89AY.440.000049
ORF1ab/nsp3947V947VgtAgtT19AY.440.000006
ORF1ab/nsp3947V947VgtAgtG99P.10.000142
ORF1ab/nsp3947V947LGtaTta88AY.40.000012
ORF1ab/nsp3947V947LGtaTta88B.10.000073
ORF1ab/nsp3947V947VgtAgtG58B.1.10.000091
ORF1ab/nsp3947V947VgtAgtC38B.1.10.000054
ORF1ab/nsp3947V947GgTagGa88B.1.1.70.000007
ORF1ab/nsp3947V947IGtaAta77AY.4.50.000752
ORF1ab/nsp3947V947IGtaAta77AY.430.000031
ORF1ab/nsp3947V947VgtAgtG47AY.430.000018
ORF1ab/nsp3947V947VgtAgtT37AY.430.000013
ORF1ab/nsp3947V947VgtAgtG77AY.730.004657
ORF1ab/nsp3947V947IGtaAta77AY.9.20.000257
ORF1ab/nsp3947V947IGtaAta77D.20.000525
ORF1ab/nsp3947V947IGtaAta77Q.80.001154
ORF1ab/nsp3947V947delGTA---660.333333
ORF1ab/nsp3947V947del1gtAgt-26All0
ORF1ab/nsp3947V947del1Gta-ta26All0
ORF1ab/nsp3947V947del1GtACt-26All0
ORF1ab/nsp3947V947IGtaAta66AY.440.000037
ORF1ab/nsp3947V947VgtAgtC66B.1.2360.01232
ORF1ab/nsp3947V947IGtaAta55A.23.10.003521
ORF1ab/nsp3947V947IGtaAta55AY.30.00005
ORF1ab/nsp3947V947VgtAgtG55AY.470.000156
ORF1ab/nsp3947V947VgtAgtG45B.1.1600.000125
ORF1ab/nsp3947V947VgtAgtC15B.1.1600.000031
ORF1ab/nsp3947V947AgTagCa55B.1.4270.000252
ORF1ab/nsp3947V947IGtaAta55B.1.6210.000443
ORF1ab/nsp3947V947TGTaACa44All0.000001
ORF1ab/nsp3947V947IGtaAta33AY.1000.000138
ORF1ab/nsp3947V947AgTagCa33AY.1200.000112
ORF1ab/nsp3947V947VgtAgtG33AY.120.10.000963
ORF1ab/nsp3947V947LGtaTta33AY.30.00003
ORF1ab/nsp3947V947VgtAgtG33AY.30.00003
ORF1ab/nsp3947V947delGTA---33AY.40.000005
ORF1ab/nsp3947V947AgTagCa33AY.40.000005
ORF1ab/nsp3947V947IGtaAta33AY.590.001589
ORF1ab/nsp3947V947IGtaAta33AY.99.20.000276
ORF1ab/nsp3947V947IGtaAta33B.1.10.000054
ORF1ab/nsp3947V947LGtaTta33B.1.1.1980.004405
ORF1ab/nsp3947V947VgtAgtG33B.1.1.2200.005576
ORF1ab/nsp3947V947TGTaACa33B.1.1.70.000003
ORF1ab/nsp3947V947IGtaAta33B.1.1310.026316
ORF1ab/nsp3947V947IGtaAta33B.1.4160.003807
ORF1ab/nsp3947V947VgtAgtG33B.1.5250.000339
ORF1ab/nsp3947V947LGtaTta23B.1.617.20.000008
ORF1ab/nsp3947V947LGtACtC13B.1.617.20.000004
ORF1ab/nsp3947V947LGtaTta33P.1.140.000143
ORF1ab/nsp3947V947del1GtACt-220.111111
ORF1ab/nsp3947V947IGtaAta22A.20.001324
ORF1ab/nsp3947V947KGTaAAa22All0
ORF1ab/nsp3947V947RGTaAGa22All0
ORF1ab/nsp3947V947EgTagAa22All0
ORF1ab/nsp3947V947SGTATCT12All0
ORF1ab/nsp3947V947SGTaTCa12All0
ORF1ab/nsp3947V947VgtAgtG22AP.10.003003
ORF1ab/nsp3947V947LGtaTta22AY.1000.000092
ORF1ab/nsp3947V947IGtaAta22AY.140.000176
ORF1ab/nsp3947V947VgtAgtG12AY.200.000039
ORF1ab/nsp3947V947VgtAgtT12AY.200.000039
ORF1ab/nsp3947V947LGtaTta22AY.250.000012
ORF1ab/nsp3947V947VgtAgtG12AY.250.000006
ORF1ab/nsp3947V947VgtAgtT12AY.250.000006
ORF1ab/nsp3947V947VgtAgtG22AY.260.000057
ORF1ab/nsp3947V947IGtaAta22AY.3.10.000171
ORF1ab/nsp3947V947LGtaTta22AY.330.000134
ORF1ab/nsp3947V947IGtaAta22AY.390.000049
ORF1ab/nsp3947V947IGtaAta22AY.39.10.000079
ORF1ab/nsp3947V947IGtaAta22AY.60.000082
ORF1ab/nsp3947V947VgtAgtG22AY.670.000929
ORF1ab/nsp3947V947VgtAgtG22AY.7.10.000225
ORF1ab/nsp3947V947AgTagCa22AY.820.002714
ORF1ab/nsp3947V947IGtaAta22B.1.1.330.000842
ORF1ab/nsp3947V947VgtAgtG22B.1.1.5190.000079
ORF1ab/nsp3947V947AgTagCa22B.1.1.70.000002
ORF1ab/nsp3947V947delGTA---22B.1.1.70.000002
ORF1ab/nsp3947V947IGtaAta22B.1.1770.000026
ORF1ab/nsp3947V947IGtaAta22B.1.177.810.000379
ORF1ab/nsp3947V947AgTagCa22B.1.20.000018
ORF1ab/nsp3947V947AgTagCa22B.1.3510.000059
ORF1ab/nsp3947V947delGTA---22B.1.360.000292
ORF1ab/nsp3947V947VgtAgtG22B.1.4080.00738
ORF1ab/nsp3947V947LGtaTta22B.1.4290.000047
ORF1ab/nsp3947V947VgtAgtT12B.1.4290.000024
ORF1ab/nsp3947V947VgtAgtG12B.1.4290.000024
ORF1ab/nsp3947V947IGtaAta22B.1.5090.001732
ORF1ab/nsp3947V947AgTagCa22B.1.617.20.000008
ORF1ab/nsp3947V947delGTA---22B.1.617.20.000008
ORF1ab/nsp3947V947SGTATCT12B.1.617.20.000004
ORF1ab/nsp3947V947SGTaTCa12B.1.617.20.000004
ORF1ab/nsp3947V947LGtaTta22C.370.000232
ORF1ab/nsp3947V947VgtAgtT22D.20.00015
ORF1ab/nsp3947V947GgTagGa22P.10.000032
ORF1ab/nsp3947V947VgtAgtG11A0.000387
ORF1ab/nsp3947V947IGtaAta11A0.000387
ORF1ab/nsp3947V947delGTA---11A.2.20.001689
ORF1ab/nsp3947V947IGtaAta11AA.40.009091
ORF1ab/nsp3947V947NGTAAAT11All0
ORF1ab/nsp3947V947FGtATtT11All0
ORF1ab/nsp3947V947del2gTAg--11All0
ORF1ab/nsp3947V947MGtAAtG11All0
ORF1ab/nsp3947V947DgTAgAT11All0
ORF1ab/nsp3947V947VgtAgtG11AY.1000.000046
ORF1ab/nsp3947V947GgTagGa11AY.1030.000006
ORF1ab/nsp3947V947AgTagCa11AY.1030.000006
ORF1ab/nsp3947V947VgtAgtG11AY.1060.000335
ORF1ab/nsp3947V947VgtAgtG11AY.1080.001103
ORF1ab/nsp3947V947delGTA---11AY.1080.001103
ORF1ab/nsp3947V947IGtaAta11AY.1090.00074
ORF1ab/nsp3947V947IGtaAta11AY.1140.000231
ORF1ab/nsp3947V947VgtAgtG11AY.1170.000085
ORF1ab/nsp3947V947AgTagCa11AY.1180.000063
ORF1ab/nsp3947V947IGtaAta11AY.1210.000135
ORF1ab/nsp3947V947LGtaTta11AY.1210.000135
ORF1ab/nsp3947V947LGtaTta11AY.130.000161
ORF1ab/nsp3947V947VgtAgtG11AY.16.10.00047
ORF1ab/nsp3947V947VgtAgtG11AY.230.00007
ORF1ab/nsp3947V947LGtaTta11AY.230.00007
ORF1ab/nsp3947V947KGTaAAa11AY.250.000006
ORF1ab/nsp3947V947NGTAAAT11AY.250.000006
ORF1ab/nsp3947V947EgTagAa11AY.250.000006
ORF1ab/nsp3947V947DgTAgAT11AY.250.000006
ORF1ab/nsp3947V947delGTA---11AY.260.000028
ORF1ab/nsp3947V947IGtaAta11AY.270.000065
ORF1ab/nsp3947V947VgtAgtC11AY.340.000097
ORF1ab/nsp3947V947AgTagCa11AY.390.000025
ORF1ab/nsp3947V947del2gTAg--11AY.40.000002
ORF1ab/nsp3947V947GgTagGa11AY.40.000002
ORF1ab/nsp3947V947IGtaAta11AY.420.00004
ORF1ab/nsp3947V947delGTA---11AY.430.000004
ORF1ab/nsp3947V947LGtaTta11AY.430.000004
ORF1ab/nsp3947V947IGtaAta11AY.450.000122
ORF1ab/nsp3947V947IGtaAta11AY.46.40.000165
ORF1ab/nsp3947V947VgtAgtC11AY.550.000917
ORF1ab/nsp3947V947VgtAgtG11AY.60.000041
ORF1ab/nsp3947V947delGTA---11AY.660.00107
ORF1ab/nsp3947V947VgtAgtG11AY.680.000274
ORF1ab/nsp3947V947VgtAgtG11AY.70.000196
ORF1ab/nsp3947V947VgtAgtG11AY.870.000833
ORF1ab/nsp3947V947VgtAgtG11AY.90.000068
ORF1ab/nsp3947V947VgtAgtG11AY.9.20.000037
ORF1ab/nsp3947V947VgtAgtG11AY.980.000079
ORF1ab/nsp3947V947IGtaAta11AY.980.000079
ORF1ab/nsp3947V947VgtAgtG11AY.98.10.000048
ORF1ab/nsp3947V947IGtaAta11AY.98.10.000048
ORF1ab/nsp3947V947VgtAgtG11B0.000128
ORF1ab/nsp3947V947IGtaAta11B.10.000009
ORF1ab/nsp3947V947LGtaTta11B.1.10.000018
ORF1ab/nsp3947V947AgTagCa11B.1.10.000018
ORF1ab/nsp3947V947AgTagCa11B.1.1.1330.008475
ORF1ab/nsp3947V947delGTA---11B.1.1.1420.017544
ORF1ab/nsp3947V947VgtAgtG11B.1.1.2140.000055
ORF1ab/nsp3947V947LGtaTta11B.1.1.250.000569
ORF1ab/nsp3947V947TGTaACa11B.1.1.2540.011236
ORF1ab/nsp3947V947VgtAgtG11B.1.1.2770.000759
ORF1ab/nsp3947V947VgtAgtT11B.1.1.2980.000862
ORF1ab/nsp3947V947EgTagAa11B.1.1.390.00051
ORF1ab/nsp3947V947LGtaTta11B.1.1.5190.00004
ORF1ab/nsp3947V947VgtAgtT11B.1.1.570.011494
ORF1ab/nsp3947V947del1gtAgt-11B.1.1.70.000001
ORF1ab/nsp3947V947MGtAAtG11B.1.1.700.000341
ORF1ab/nsp3947V947delGTA---11B.1.1600.000031
ORF1ab/nsp3947V947del1gtAgt-11B.1.1600.000031
ORF1ab/nsp3947V947IGtaAta11B.1.160.220.006757
ORF1ab/nsp3947V947LGtaTta11B.1.1770.000013
ORF1ab/nsp3947V947IGtaAta11B.1.177.730.000566
ORF1ab/nsp3947V947RGTaAGa11B.1.20.000009
ORF1ab/nsp3947V947KGTaAAa11B.1.20.000009
ORF1ab/nsp3947V947VgtAgtG11B.1.20.000009
ORF1ab/nsp3947V947LGtaTta11B.1.20.000009
ORF1ab/nsp3947V947delGTA---11B.1.20.000009
ORF1ab/nsp3947V947VgtAgtG11B.1.2340.000132
ORF1ab/nsp3947V947IGtaAta11B.1.2390.001221
ORF1ab/nsp3947V947VgtAgtT11B.1.2580.000067
ORF1ab/nsp3947V947del1Gta-ta11B.1.258.170.000104
ORF1ab/nsp3947V947IGtaAta11B.1.258.170.000104
ORF1ab/nsp3947V947delGTA---11B.1.3190.003049
ORF1ab/nsp3947V947LGtaTta11B.1.3490.000715
ORF1ab/nsp3947V947VgtAgtG11B.1.36.290.000517
ORF1ab/nsp3947V947VgtAgtG11B.1.3670.000792
ORF1ab/nsp3947V947VgtAgtG11B.1.3750.00082
ORF1ab/nsp3947V947VgtAgtT11B.1.4280.00102
ORF1ab/nsp3947V947IGtaAta11B.1.4290.000024
ORF1ab/nsp3947V947VgtAgtG11B.1.438.10.000107
ORF1ab/nsp3947V947IGtaAta11B.1.4990.00105
ORF1ab/nsp3947V947LGtaTta11B.1.5260.000024
ORF1ab/nsp3947V947VgtAgtG11B.1.5650.00081
ORF1ab/nsp3947V947VgtAgtG11B.1.5960.000087
ORF1ab/nsp3947V947VgtAgtG11B.1.617.10.000129
ORF1ab/nsp3947V947GgTagGa11B.1.617.20.000004
ORF1ab/nsp3947V947del1Gta-ta11B.1.617.20.000004
ORF1ab/nsp3947V947VgtAgtG11B.1.6190.000871
ORF1ab/nsp3947V947IGtaAta11B.1.6230.000536
ORF1ab/nsp3947V947delGTA---11B.150.017544
ORF1ab/nsp3947V947VgtAgtC11B.30.000831
ORF1ab/nsp3947V947IGtaAta11C.30.007634
ORF1ab/nsp3947V947VgtAgtG11C.36.30.000567
ORF1ab/nsp3947V947AgTagCa11C.370.000116
ORF1ab/nsp3947V947AgTagCa11C.37.10.002618
ORF1ab/nsp3947V947VgtAgtG11C.40.01
ORF1ab/nsp3947V947LGtaTta11D.20.000075
ORF1ab/nsp3947V947FGtATtT11D.20.000075
ORF1ab/nsp3947V947IGtaAta11P.1.10.000318
ORF1ab/nsp3947V947VgtAgtG11P.1.100.000269
ORF1ab/nsp3947V947RGTaAGa11P.1.170.000162
ORF1ab/nsp3947V947IGtaAta11Q.10.000126
ORF1ab/nsp3947V947VgtAgtT11Q.10.000126
ORF1ab/nsp3947V947VgtAgtG11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.