CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 947

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3947V947VV1765VsyngtAgtG157514500.9206355558-5560
ORF1ab/nsp3947V947VV1765VsyngtAgtT15751080.06857145558-5560
ORF1ab/nsp3947V947VV1765VsyngtAgtC1575170.01079375558-5560
ORF1ab/nsp3947V947IV1765InonsynGtaAta9149130.9989065558-5560
ORF1ab/nsp3947V947IV1765InonsynGtAAtT91410.001094095558-5560
ORF1ab/nsp3947V947LV1765LnonsynGtaTta1351340.9925935558-5560
ORF1ab/nsp3947V947LV1765LnonsynGtACtC13510.007407415558-5560
ORF1ab/nsp3947V947AV1765AnonsyngTagCa282815558-5560
ORF1ab/nsp3947V947delV1765deldelGTA---252515558-5560
ORF1ab/nsp3947V947GV1765GnonsyngTagGa131315558-5560
ORF1ab/nsp3947V947del1V1765del1delGtACt-620.3333335558-5560
ORF1ab/nsp3947V947del1V1765del1delgtAgt-620.3333335558-5560
ORF1ab/nsp3947V947del1V1765del1delGta-ta620.3333335558-5560
ORF1ab/nsp3947V947TV1765TnonsynGTaACa4415558-5560
ORF1ab/nsp3947V947KV1765KnonsynGTaAAa2215558-5560
ORF1ab/nsp3947V947RV1765RnonsynGTaAGa2215558-5560
ORF1ab/nsp3947V947EV1765EnonsyngTagAa2215558-5560
ORF1ab/nsp3947V947SV1765SnonsynGTaTCa210.55558-5560
ORF1ab/nsp3947V947SV1765SnonsynGTATCT210.55558-5560
ORF1ab/nsp3947V947NV1765NnonsynGTAAAT1115558-5560
ORF1ab/nsp3947V947FV1765FnonsynGtATtT1115558-5560
ORF1ab/nsp3947V947del2V1765del2delgTAg--1115558-5560
ORF1ab/nsp3947V947MV1765MnonsynGtAAtG1115558-5560
ORF1ab/nsp3947V947DV1765DnonsyngTAgAT1115558-5560

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3947V947VgtAgtG14501575All0.000277
ORF1ab/nsp3947V947VgtAgtT1081575All0.000021
ORF1ab/nsp3947V947VgtAgtC171575All0.000003
ORF1ab/nsp3947V947IGtaAta913914All0.000175
ORF1ab/nsp3947V947IGtAAtT1914All0
ORF1ab/nsp3947V947VgtAgtG608608B.1.1.700.207367
ORF1ab/nsp3947V947VgtAgtG550550B.1.2210.039068
ORF1ab/nsp3947V947IGtaAta473473B.1.1.70.000423
ORF1ab/nsp3947V947IGtaAta147147AY.40.000229
ORF1ab/nsp3947V947LGtaTta134135All0.000026
ORF1ab/nsp3947V947LGtACtC1135All0
ORF1ab/nsp3947V947IGtaAta8181AY.1030.000503
ORF1ab/nsp3947V947VgtAgtG5274B.1.1.70.000047
ORF1ab/nsp3947V947VgtAgtT2274B.1.1.70.00002
ORF1ab/nsp3947V947VgtAgtG3970AY.1030.000242
ORF1ab/nsp3947V947VgtAgtT3170AY.1030.000192
ORF1ab/nsp3947V947VgtAgtT3636B.1.595.30.947368
ORF1ab/nsp3947V947AgTagCa2828All0.000005
ORF1ab/nsp3947V947LGtaTta2828AY.440.00017
ORF1ab/nsp3947V947VgtAgtG2427B.10.00022
ORF1ab/nsp3947V947VgtAgtC227B.10.000018
ORF1ab/nsp3947V947VgtAgtT127B.10.000009
ORF1ab/nsp3947V947delGTA---2525All0.000005
ORF1ab/nsp3947V947IGtaAta2525B.1.20.00022
ORF1ab/nsp3947V947VgtAgtG2323B.1.1.4160.020814
ORF1ab/nsp3947V947LGtaTta2222AY.1020.000583
ORF1ab/nsp3947V947LGtaTta1818B.1.1.70.000016
ORF1ab/nsp3947V947VgtAgtG1418B.1.617.20.000053
ORF1ab/nsp3947V947VgtAgtT218B.1.617.20.000008
ORF1ab/nsp3947V947VgtAgtC218B.1.617.20.000008
ORF1ab/nsp3947V947LGtaTta1717B.1.1.2160.015138
ORF1ab/nsp3947V947IGtaAta1515B.1.617.20.000056
ORF1ab/nsp3947V947GgTagGa1313All0.000002
ORF1ab/nsp3947V947IGtaAta1313AY.1020.000345
ORF1ab/nsp3947V947IGtaAta1313AY.200.000505
ORF1ab/nsp3947V947VgtAgtG1112B.1.1770.000145
ORF1ab/nsp3947V947VgtAgtT112B.1.1770.000013
ORF1ab/nsp3947V947IGtaAta1011AY.250.00006
ORF1ab/nsp3947V947IGtAAtT111AY.250.000006
ORF1ab/nsp3947V947IGtaAta1010AY.330.000668
ORF1ab/nsp3947V947VgtAgtG910AY.40.000014
ORF1ab/nsp3947V947VgtAgtT110AY.40.000002
ORF1ab/nsp3947V947VgtAgtG1010AY.7.20.005593
ORF1ab/nsp3947V947IGtaAta1010B.1.3510.000297
ORF1ab/nsp3947V947VgtAgtG99AY.390.000222
ORF1ab/nsp3947V947VgtAgtG89AY.440.000049
ORF1ab/nsp3947V947VgtAgtT19AY.440.000006
ORF1ab/nsp3947V947VgtAgtG99P.10.000142
ORF1ab/nsp3947V947LGtaTta88AY.40.000012
ORF1ab/nsp3947V947LGtaTta88B.10.000073
ORF1ab/nsp3947V947VgtAgtG58B.1.10.000091
ORF1ab/nsp3947V947VgtAgtC38B.1.10.000054
ORF1ab/nsp3947V947GgTagGa88B.1.1.70.000007
ORF1ab/nsp3947V947IGtaAta77AY.4.50.000752
ORF1ab/nsp3947V947IGtaAta77AY.430.000031
ORF1ab/nsp3947V947VgtAgtG47AY.430.000018
ORF1ab/nsp3947V947VgtAgtT37AY.430.000013
ORF1ab/nsp3947V947VgtAgtG77AY.730.004657
ORF1ab/nsp3947V947IGtaAta77AY.9.20.000257
ORF1ab/nsp3947V947IGtaAta77D.20.000525
ORF1ab/nsp3947V947IGtaAta77Q.80.001154
ORF1ab/nsp3947V947delGTA---660.333333
ORF1ab/nsp3947V947del1gtAgt-26All0
ORF1ab/nsp3947V947del1Gta-ta26All0
ORF1ab/nsp3947V947del1GtACt-26All0
ORF1ab/nsp3947V947IGtaAta66AY.440.000037
ORF1ab/nsp3947V947VgtAgtC66B.1.2360.01232
ORF1ab/nsp3947V947IGtaAta55A.23.10.003521
ORF1ab/nsp3947V947IGtaAta55AY.30.00005
ORF1ab/nsp3947V947VgtAgtG55AY.470.000156
ORF1ab/nsp3947V947VgtAgtG45B.1.1600.000125
ORF1ab/nsp3947V947VgtAgtC15B.1.1600.000031
ORF1ab/nsp3947V947AgTagCa55B.1.4270.000252
ORF1ab/nsp3947V947IGtaAta55B.1.6210.000443
ORF1ab/nsp3947V947TGTaACa44All0.000001
ORF1ab/nsp3947V947IGtaAta33AY.1000.000138
ORF1ab/nsp3947V947AgTagCa33AY.1200.000112
ORF1ab/nsp3947V947VgtAgtG33AY.120.10.000963
ORF1ab/nsp3947V947LGtaTta33AY.30.00003
ORF1ab/nsp3947V947VgtAgtG33AY.30.00003
ORF1ab/nsp3947V947delGTA---33AY.40.000005
ORF1ab/nsp3947V947AgTagCa33AY.40.000005
ORF1ab/nsp3947V947IGtaAta33AY.590.001589
ORF1ab/nsp3947V947IGtaAta33AY.99.20.000276
ORF1ab/nsp3947V947IGtaAta33B.1.10.000054
ORF1ab/nsp3947V947LGtaTta33B.1.1.1980.004405
ORF1ab/nsp3947V947VgtAgtG33B.1.1.2200.005576
ORF1ab/nsp3947V947TGTaACa33B.1.1.70.000003
ORF1ab/nsp3947V947IGtaAta33B.1.1310.026316
ORF1ab/nsp3947V947IGtaAta33B.1.4160.003807
ORF1ab/nsp3947V947VgtAgtG33B.1.5250.000339
ORF1ab/nsp3947V947LGtaTta23B.1.617.20.000008
ORF1ab/nsp3947V947LGtACtC13B.1.617.20.000004
ORF1ab/nsp3947V947LGtaTta33P.1.140.000143
ORF1ab/nsp3947V947del1GtACt-220.111111
ORF1ab/nsp3947V947IGtaAta22A.20.001324
ORF1ab/nsp3947V947KGTaAAa22All0
ORF1ab/nsp3947V947RGTaAGa22All0
ORF1ab/nsp3947V947EgTagAa22All0
ORF1ab/nsp3947V947SGTATCT12All0
ORF1ab/nsp3947V947SGTaTCa12All0
ORF1ab/nsp3947V947VgtAgtG22AP.10.003003
ORF1ab/nsp3947V947LGtaTta22AY.1000.000092
ORF1ab/nsp3947V947IGtaAta22AY.140.000176
ORF1ab/nsp3947V947VgtAgtG12AY.200.000039
ORF1ab/nsp3947V947VgtAgtT12AY.200.000039
ORF1ab/nsp3947V947LGtaTta22AY.250.000012
ORF1ab/nsp3947V947VgtAgtG12AY.250.000006
ORF1ab/nsp3947V947VgtAgtT12AY.250.000006
ORF1ab/nsp3947V947VgtAgtG22AY.260.000057
ORF1ab/nsp3947V947IGtaAta22AY.3.10.000171
ORF1ab/nsp3947V947LGtaTta22AY.330.000134
ORF1ab/nsp3947V947IGtaAta22AY.390.000049
ORF1ab/nsp3947V947IGtaAta22AY.39.10.000079
ORF1ab/nsp3947V947IGtaAta22AY.60.000082
ORF1ab/nsp3947V947VgtAgtG22AY.670.000929
ORF1ab/nsp3947V947VgtAgtG22AY.7.10.000225
ORF1ab/nsp3947V947AgTagCa22AY.820.002714
ORF1ab/nsp3947V947IGtaAta22B.1.1.330.000842
ORF1ab/nsp3947V947VgtAgtG22B.1.1.5190.000079
ORF1ab/nsp3947V947AgTagCa22B.1.1.70.000002
ORF1ab/nsp3947V947delGTA---22B.1.1.70.000002
ORF1ab/nsp3947V947IGtaAta22B.1.1770.000026
ORF1ab/nsp3947V947IGtaAta22B.1.177.810.000379
ORF1ab/nsp3947V947AgTagCa22B.1.20.000018
ORF1ab/nsp3947V947AgTagCa22B.1.3510.000059
ORF1ab/nsp3947V947delGTA---22B.1.360.000292
ORF1ab/nsp3947V947VgtAgtG22B.1.4080.00738
ORF1ab/nsp3947V947LGtaTta22B.1.4290.000047
ORF1ab/nsp3947V947VgtAgtT12B.1.4290.000024
ORF1ab/nsp3947V947VgtAgtG12B.1.4290.000024
ORF1ab/nsp3947V947IGtaAta22B.1.5090.001732
ORF1ab/nsp3947V947AgTagCa22B.1.617.20.000008
ORF1ab/nsp3947V947delGTA---22B.1.617.20.000008
ORF1ab/nsp3947V947SGTATCT12B.1.617.20.000004
ORF1ab/nsp3947V947SGTaTCa12B.1.617.20.000004
ORF1ab/nsp3947V947LGtaTta22C.370.000232
ORF1ab/nsp3947V947VgtAgtT22D.20.00015
ORF1ab/nsp3947V947GgTagGa22P.10.000032
ORF1ab/nsp3947V947VgtAgtG11A0.000387
ORF1ab/nsp3947V947IGtaAta11A0.000387
ORF1ab/nsp3947V947delGTA---11A.2.20.001689
ORF1ab/nsp3947V947IGtaAta11AA.40.009091
ORF1ab/nsp3947V947NGTAAAT11All0
ORF1ab/nsp3947V947FGtATtT11All0
ORF1ab/nsp3947V947del2gTAg--11All0
ORF1ab/nsp3947V947MGtAAtG11All0
ORF1ab/nsp3947V947DgTAgAT11All0
ORF1ab/nsp3947V947VgtAgtG11AY.1000.000046
ORF1ab/nsp3947V947GgTagGa11AY.1030.000006
ORF1ab/nsp3947V947AgTagCa11AY.1030.000006
ORF1ab/nsp3947V947VgtAgtG11AY.1060.000335
ORF1ab/nsp3947V947VgtAgtG11AY.1080.001103
ORF1ab/nsp3947V947delGTA---11AY.1080.001103
ORF1ab/nsp3947V947IGtaAta11AY.1090.00074
ORF1ab/nsp3947V947IGtaAta11AY.1140.000231
ORF1ab/nsp3947V947VgtAgtG11AY.1170.000085
ORF1ab/nsp3947V947AgTagCa11AY.1180.000063
ORF1ab/nsp3947V947IGtaAta11AY.1210.000135
ORF1ab/nsp3947V947LGtaTta11AY.1210.000135
ORF1ab/nsp3947V947LGtaTta11AY.130.000161
ORF1ab/nsp3947V947VgtAgtG11AY.16.10.00047
ORF1ab/nsp3947V947VgtAgtG11AY.230.00007
ORF1ab/nsp3947V947LGtaTta11AY.230.00007
ORF1ab/nsp3947V947KGTaAAa11AY.250.000006
ORF1ab/nsp3947V947NGTAAAT11AY.250.000006
ORF1ab/nsp3947V947EgTagAa11AY.250.000006
ORF1ab/nsp3947V947DgTAgAT11AY.250.000006
ORF1ab/nsp3947V947delGTA---11AY.260.000028
ORF1ab/nsp3947V947IGtaAta11AY.270.000065
ORF1ab/nsp3947V947VgtAgtC11AY.340.000097
ORF1ab/nsp3947V947AgTagCa11AY.390.000025
ORF1ab/nsp3947V947del2gTAg--11AY.40.000002
ORF1ab/nsp3947V947GgTagGa11AY.40.000002
ORF1ab/nsp3947V947IGtaAta11AY.420.00004
ORF1ab/nsp3947V947delGTA---11AY.430.000004
ORF1ab/nsp3947V947LGtaTta11AY.430.000004
ORF1ab/nsp3947V947IGtaAta11AY.450.000122
ORF1ab/nsp3947V947IGtaAta11AY.46.40.000165
ORF1ab/nsp3947V947VgtAgtC11AY.550.000917
ORF1ab/nsp3947V947VgtAgtG11AY.60.000041
ORF1ab/nsp3947V947delGTA---11AY.660.00107
ORF1ab/nsp3947V947VgtAgtG11AY.680.000274
ORF1ab/nsp3947V947VgtAgtG11AY.70.000196
ORF1ab/nsp3947V947VgtAgtG11AY.870.000833
ORF1ab/nsp3947V947VgtAgtG11AY.90.000068
ORF1ab/nsp3947V947VgtAgtG11AY.9.20.000037
ORF1ab/nsp3947V947VgtAgtG11AY.980.000079
ORF1ab/nsp3947V947IGtaAta11AY.980.000079
ORF1ab/nsp3947V947VgtAgtG11AY.98.10.000048
ORF1ab/nsp3947V947IGtaAta11AY.98.10.000048
ORF1ab/nsp3947V947VgtAgtG11B0.000128
ORF1ab/nsp3947V947IGtaAta11B.10.000009
ORF1ab/nsp3947V947LGtaTta11B.1.10.000018
ORF1ab/nsp3947V947AgTagCa11B.1.10.000018
ORF1ab/nsp3947V947AgTagCa11B.1.1.1330.008475
ORF1ab/nsp3947V947delGTA---11B.1.1.1420.017544
ORF1ab/nsp3947V947VgtAgtG11B.1.1.2140.000055
ORF1ab/nsp3947V947LGtaTta11B.1.1.250.000569
ORF1ab/nsp3947V947TGTaACa11B.1.1.2540.011236
ORF1ab/nsp3947V947VgtAgtG11B.1.1.2770.000759
ORF1ab/nsp3947V947VgtAgtT11B.1.1.2980.000862
ORF1ab/nsp3947V947EgTagAa11B.1.1.390.00051
ORF1ab/nsp3947V947LGtaTta11B.1.1.5190.00004
ORF1ab/nsp3947V947VgtAgtT11B.1.1.570.011494
ORF1ab/nsp3947V947del1gtAgt-11B.1.1.70.000001
ORF1ab/nsp3947V947MGtAAtG11B.1.1.700.000341
ORF1ab/nsp3947V947delGTA---11B.1.1600.000031
ORF1ab/nsp3947V947del1gtAgt-11B.1.1600.000031
ORF1ab/nsp3947V947IGtaAta11B.1.160.220.006757
ORF1ab/nsp3947V947LGtaTta11B.1.1770.000013
ORF1ab/nsp3947V947IGtaAta11B.1.177.730.000566
ORF1ab/nsp3947V947RGTaAGa11B.1.20.000009
ORF1ab/nsp3947V947KGTaAAa11B.1.20.000009
ORF1ab/nsp3947V947VgtAgtG11B.1.20.000009
ORF1ab/nsp3947V947LGtaTta11B.1.20.000009
ORF1ab/nsp3947V947delGTA---11B.1.20.000009
ORF1ab/nsp3947V947VgtAgtG11B.1.2340.000132
ORF1ab/nsp3947V947IGtaAta11B.1.2390.001221
ORF1ab/nsp3947V947VgtAgtT11B.1.2580.000067
ORF1ab/nsp3947V947del1Gta-ta11B.1.258.170.000104
ORF1ab/nsp3947V947IGtaAta11B.1.258.170.000104
ORF1ab/nsp3947V947delGTA---11B.1.3190.003049
ORF1ab/nsp3947V947LGtaTta11B.1.3490.000715
ORF1ab/nsp3947V947VgtAgtG11B.1.36.290.000517
ORF1ab/nsp3947V947VgtAgtG11B.1.3670.000792
ORF1ab/nsp3947V947VgtAgtG11B.1.3750.00082
ORF1ab/nsp3947V947VgtAgtT11B.1.4280.00102
ORF1ab/nsp3947V947IGtaAta11B.1.4290.000024
ORF1ab/nsp3947V947VgtAgtG11B.1.438.10.000107
ORF1ab/nsp3947V947IGtaAta11B.1.4990.00105
ORF1ab/nsp3947V947LGtaTta11B.1.5260.000024
ORF1ab/nsp3947V947VgtAgtG11B.1.5650.00081
ORF1ab/nsp3947V947VgtAgtG11B.1.5960.000087
ORF1ab/nsp3947V947VgtAgtG11B.1.617.10.000129
ORF1ab/nsp3947V947GgTagGa11B.1.617.20.000004
ORF1ab/nsp3947V947del1Gta-ta11B.1.617.20.000004
ORF1ab/nsp3947V947VgtAgtG11B.1.6190.000871
ORF1ab/nsp3947V947IGtaAta11B.1.6230.000536
ORF1ab/nsp3947V947delGTA---11B.150.017544
ORF1ab/nsp3947V947VgtAgtC11B.30.000831
ORF1ab/nsp3947V947IGtaAta11C.30.007634
ORF1ab/nsp3947V947VgtAgtG11C.36.30.000567
ORF1ab/nsp3947V947AgTagCa11C.370.000116
ORF1ab/nsp3947V947AgTagCa11C.37.10.002618
ORF1ab/nsp3947V947VgtAgtG11C.40.01
ORF1ab/nsp3947V947LGtaTta11D.20.000075
ORF1ab/nsp3947V947FGtATtT11D.20.000075
ORF1ab/nsp3947V947IGtaAta11P.1.10.000318
ORF1ab/nsp3947V947VgtAgtG11P.1.100.000269
ORF1ab/nsp3947V947RGTaAGa11P.1.170.000162
ORF1ab/nsp3947V947IGtaAta11Q.10.000126
ORF1ab/nsp3947V947VgtAgtT11Q.10.000126
ORF1ab/nsp3947V947VgtAgtG11Q.80.000165