CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 944

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3944L944FL1762FnonsynCttTtt5545520.996395549-5551
ORF1ab/nsp3944L944FL1762FnonsynCtTTtC55420.003610115549-5551
ORF1ab/nsp3944L944IL1762InonsynCttAtt29229215549-5551
ORF1ab/nsp3944L944LL1762LsynctTctC1701340.7882355549-5551
ORF1ab/nsp3944L944LL1762LsynctTctA170320.1882355549-5551
ORF1ab/nsp3944L944LL1762LsynctTctG17040.02352945549-5551
ORF1ab/nsp3944L944VL1762VnonsynCttGtt30280.9333335549-5551
ORF1ab/nsp3944L944VL1762VnonsynCtTGtG3010.03333335549-5551
ORF1ab/nsp3944L944VL1762VnonsynCtTGtC3010.03333335549-5551
ORF1ab/nsp3944L944delL1762deldelCTT---242415549-5551
ORF1ab/nsp3944L944PL1762PnonsyncTtcCt222215549-5551
ORF1ab/nsp3944L944RL1762RnonsyncTtcGt141415549-5551
ORF1ab/nsp3944L944HL1762HnonsyncTtcAt870.8755549-5551
ORF1ab/nsp3944L944HL1762HnonsyncTTcAC810.1255549-5551
ORF1ab/nsp3944L944del1L1762del1delctTct-740.5714295549-5551
ORF1ab/nsp3944L944del1L1762del1delcTtc-t730.4285715549-5551
ORF1ab/nsp3944L944ML1762MnonsynCtTAtG2215549-5551
ORF1ab/nsp3944L944GL1762GnonsynCTtGGt1115549-5551
ORF1ab/nsp3944L944KL1762KnonsynCTTAAA1115549-5551
ORF1ab/nsp3944L944TL1762TnonsynCTtACt1115549-5551
ORF1ab/nsp3944L944DL1762DnonsynCTTGAC1115549-5551
ORF1ab/nsp3944L944del2L1762del2delcTTc--1115549-5551

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3944L944FCttTtt552554All0.000106
ORF1ab/nsp3944L944FCtTTtC2554All0
ORF1ab/nsp3944L944ICttAtt292292All0.000056
ORF1ab/nsp3944L944LctTctC134170All0.000026
ORF1ab/nsp3944L944LctTctA32170All0.000006
ORF1ab/nsp3944L944LctTctG4170All0.000001
ORF1ab/nsp3944L944ICttAtt152152B.1.3510.004518
ORF1ab/nsp3944L944FCttTtt108108B.1.1.70.000097
ORF1ab/nsp3944L944FCttTtt4343AY.270.002783
ORF1ab/nsp3944L944ICttAtt4343B.1.1.70.000038
ORF1ab/nsp3944L944FCttTtt4242M.10.976744
ORF1ab/nsp3944L944LctTctC3535B.1.6230.018777
ORF1ab/nsp3944L944FCttTtt3434AY.60.001398
ORF1ab/nsp3944L944FCttTtt3131B.1.4270.001565
ORF1ab/nsp3944L944VCttGtt2830All0.000005
ORF1ab/nsp3944L944VCtTGtG130All0
ORF1ab/nsp3944L944VCtTGtC130All0
ORF1ab/nsp3944L944ICttAtt2727B.1.617.20.000102
ORF1ab/nsp3944L944delCTT---2424All0.000005
ORF1ab/nsp3944L944PcTtcCt2222All0.000004
ORF1ab/nsp3944L944FCttTtt2121B.1.617.20.000079
ORF1ab/nsp3944L944LctTctC2020B.1.20.000176
ORF1ab/nsp3944L944FCttTtt1717AY.130.002737
ORF1ab/nsp3944L944LctTctA1617AY.440.000097
ORF1ab/nsp3944L944LctTctC117AY.440.000006
ORF1ab/nsp3944L944FCttTtt1515AY.40.000023
ORF1ab/nsp3944L944RcTtcGt1414All0.000003
ORF1ab/nsp3944L944FCttTtt1414AY.1030.000087
ORF1ab/nsp3944L944FCttTtt1313B.1.1600.000405
ORF1ab/nsp3944L944FCttTtt1212AY.730.007984
ORF1ab/nsp3944L944LctTctC1112B.1.1.70.00001
ORF1ab/nsp3944L944LctTctA112B.1.1.70.000001
ORF1ab/nsp3944L944FCttTtt1212B.1.5510.015484
ORF1ab/nsp3944L944LctTctC1112B.1.617.20.000041
ORF1ab/nsp3944L944LctTctA112B.1.617.20.000004
ORF1ab/nsp3944L944FCttTtt1111AY.440.000067
ORF1ab/nsp3944L944FCttTtt1111B.1.20.000097
ORF1ab/nsp3944L944FCttTtt1111B.1.6210.000974
ORF1ab/nsp3944L944VCttGtt1010AY.40.000016
ORF1ab/nsp3944L944LctTctC1010B.260.147059
ORF1ab/nsp3944L944FCttTtt99AY.250.000054
ORF1ab/nsp3944L944LctTctC99AY.4.40.003682
ORF1ab/nsp3944L944FCttTtt99B.10.000082
ORF1ab/nsp3944L944VCttGtt99B.1.5250.001018
ORF1ab/nsp3944L944HcTtcAt78All0.000001
ORF1ab/nsp3944L944HcTTcAC18All0
ORF1ab/nsp3944L944VCttGtt88B.1.1.70.000007
ORF1ab/nsp3944L944LctTctC78B.1.1770.000092
ORF1ab/nsp3944L944LctTctG18B.1.1770.000013
ORF1ab/nsp3944L944FCttTtt88P.10.000126
ORF1ab/nsp3944L944del1ctTct-47All0.000001
ORF1ab/nsp3944L944del1cTtc-t37All0.000001
ORF1ab/nsp3944L944ICttAtt77AY.440.000043
ORF1ab/nsp3944L944FCttTtt77B.1.6230.003755
ORF1ab/nsp3944L944PcTtcCt77P.1.10.002224
ORF1ab/nsp3944L944FCttTtt66AY.1020.000159
ORF1ab/nsp3944L944FCttTtt66AY.200.000233
ORF1ab/nsp3944L944ICttAtt66AY.290.000095
ORF1ab/nsp3944L944ICttAtt66AY.40.000009
ORF1ab/nsp3944L944LctTctA56AY.40.000008
ORF1ab/nsp3944L944LctTctC16AY.40.000002
ORF1ab/nsp3944L944FCttTtt66B.1.10.000109
ORF1ab/nsp3944L944LctTctA66B.1.1.5190.000238
ORF1ab/nsp3944L944FCttTtt66P.1.140.000287
ORF1ab/nsp3944L944ICttAtt55AY.1020.000133
ORF1ab/nsp3944L944FCttTtt55AY.470.000156
ORF1ab/nsp3944L944FCttTtt55AY.700.001043
ORF1ab/nsp3944L944ICttAtt55B.10.000046
ORF1ab/nsp3944L944delCTT---55B.1.1.70.000004
ORF1ab/nsp3944L944ICttAtt55B.1.20.000044
ORF1ab/nsp3944L944FCttTtt55B.1.5260.000118
ORF1ab/nsp3944L944PcTtcCt440.222222
ORF1ab/nsp3944L944FCttTtt44AY.30.00004
ORF1ab/nsp3944L944FCttTtt44Q.10.000505
ORF1ab/nsp3944L944FCttTtt33AY.1000.000138
ORF1ab/nsp3944L944ICttAtt33AY.1030.000019
ORF1ab/nsp3944L944LctTctC33AY.1050.001929
ORF1ab/nsp3944L944LctTctC33AY.1190.000106
ORF1ab/nsp3944L944ICttAtt33AY.390.000074
ORF1ab/nsp3944L944delCTT---33AY.40.000005
ORF1ab/nsp3944L944LctTctC33AY.430.000013
ORF1ab/nsp3944L944FCttTtt33AY.50.000062
ORF1ab/nsp3944L944FCttTtt33AY.75.10.000541
ORF1ab/nsp3944L944LctTctC33B.1.1.250.001706
ORF1ab/nsp3944L944RcTtcGt33B.1.1.2630.004673
ORF1ab/nsp3944L944RcTtcGt33B.1.1.70.000003
ORF1ab/nsp3944L944ICttAtt33B.1.1770.00004
ORF1ab/nsp3944L944delCTT---33B.1.617.20.000011
ORF1ab/nsp3944L944del1cTtc-t23B.1.617.20.000008
ORF1ab/nsp3944L944del1ctTct-13B.1.617.20.000004
ORF1ab/nsp3944L944FCttTtt33B.400.001093
ORF1ab/nsp3944L944ICttAtt33P.10.000047
ORF1ab/nsp3944L944FCtTTtC220.111111
ORF1ab/nsp3944L944del1ctTct-220.111111
ORF1ab/nsp3944L944MCtTAtG22All0
ORF1ab/nsp3944L944LctTctC22AY.1030.000012
ORF1ab/nsp3944L944FCttTtt22AY.230.000139
ORF1ab/nsp3944L944FCttTtt22AY.260.000057
ORF1ab/nsp3944L944RcTtcGt22AY.30.00002
ORF1ab/nsp3944L944FCttTtt22AY.390.000049
ORF1ab/nsp3944L944ICttAtt22AY.4.20.000043
ORF1ab/nsp3944L944FCttTtt22AY.4.20.000043
ORF1ab/nsp3944L944ICttAtt22AY.4.50.000215
ORF1ab/nsp3944L944ICttAtt22AY.430.000009
ORF1ab/nsp3944L944FCttTtt22AY.430.000009
ORF1ab/nsp3944L944VCtTGtG12AY.990.001049
ORF1ab/nsp3944L944VCtTGtC12AY.990.001049
ORF1ab/nsp3944L944LctTctG12AY.990.001049
ORF1ab/nsp3944L944LctTctC12AY.990.001049
ORF1ab/nsp3944L944PcTtcCt22B.10.000018
ORF1ab/nsp3944L944LctTctC22B.1.10.000036
ORF1ab/nsp3944L944FCttTtt22B.1.1.2940.002532
ORF1ab/nsp3944L944FCttTtt22B.1.1.5190.000079
ORF1ab/nsp3944L944FCttTtt22B.1.177.320.002699
ORF1ab/nsp3944L944RcTtcGt22B.1.20.000018
ORF1ab/nsp3944L944FCttTtt22B.1.2580.000133
ORF1ab/nsp3944L944FCttTtt22B.1.3240.00321
ORF1ab/nsp3944L944LctTctC22B.1.3510.000059
ORF1ab/nsp3944L944delCTT---22B.1.360.000292
ORF1ab/nsp3944L944FCttTtt22B.1.4290.000047
ORF1ab/nsp3944L944FCttTtt22B.1.5250.000226
ORF1ab/nsp3944L944PcTtcCt22B.1.617.20.000008
ORF1ab/nsp3944L944ICttAtt22B.1.6210.000177
ORF1ab/nsp3944L944LctTctC22D.20.00015
ORF1ab/nsp3944L944FCttTtt22N.90.011905
ORF1ab/nsp3944L944HcTtcAt110.055556
ORF1ab/nsp3944L944delCTT---11A.2.20.001689
ORF1ab/nsp3944L944MCtTAtG11A.210.00277
ORF1ab/nsp3944L944FCttTtt11A.280.002646
ORF1ab/nsp3944L944HcTtcAt11AD.20.000219
ORF1ab/nsp3944L944FCttTtt11AE.80.000489
ORF1ab/nsp3944L944DCTTGAC11All0
ORF1ab/nsp3944L944del2cTTc--11All0
ORF1ab/nsp3944L944GCTtGGt11All0
ORF1ab/nsp3944L944KCTTAAA11All0
ORF1ab/nsp3944L944TCTtACt11All0
ORF1ab/nsp3944L944delCTT---11AY.1080.001103
ORF1ab/nsp3944L944FCttTtt11AY.1160.000287
ORF1ab/nsp3944L944FCttTtt11AY.116.10.000311
ORF1ab/nsp3944L944ICttAtt11AY.1190.000035
ORF1ab/nsp3944L944PcTtcCt11AY.1190.000035
ORF1ab/nsp3944L944HcTtcAt11AY.1190.000035
ORF1ab/nsp3944L944ICttAtt11AY.250.000006
ORF1ab/nsp3944L944LctTctG11AY.260.000028
ORF1ab/nsp3944L944delCTT---11AY.260.000028
ORF1ab/nsp3944L944ICttAtt11AY.260.000028
ORF1ab/nsp3944L944FCttTtt11AY.330.000067
ORF1ab/nsp3944L944HcTtcAt11AY.330.000067
ORF1ab/nsp3944L944FCttTtt11AY.350.000233
ORF1ab/nsp3944L944FCttTtt11AY.360.000148
ORF1ab/nsp3944L944RcTtcGt11AY.390.000025
ORF1ab/nsp3944L944PcTtcCt11AY.40.000002
ORF1ab/nsp3944L944delCTT---11AY.430.000004
ORF1ab/nsp3944L944FCttTtt11AY.460.000104
ORF1ab/nsp3944L944FCttTtt11AY.550.000917
ORF1ab/nsp3944L944ICttAtt11AY.590.00053
ORF1ab/nsp3944L944LctTctC11AY.60.000041
ORF1ab/nsp3944L944delCTT---11AY.660.00107
ORF1ab/nsp3944L944FCttTtt11AY.680.000274
ORF1ab/nsp3944L944FCttTtt11AY.690.000187
ORF1ab/nsp3944L944del1cTtc-t11AY.790.001211
ORF1ab/nsp3944L944LctTctG11AY.840.000437
ORF1ab/nsp3944L944ICttAtt11AY.9.10.000084
ORF1ab/nsp3944L944FCttTtt11AY.9.20.000037
ORF1ab/nsp3944L944FCttTtt11AY.950.000761
ORF1ab/nsp3944L944PcTtcCt11AY.980.000079
ORF1ab/nsp3944L944ICttAtt11AY.980.000079
ORF1ab/nsp3944L944HcTtcAt11B.10.000009
ORF1ab/nsp3944L944LctTctA11B.10.000009
ORF1ab/nsp3944L944ICttAtt11B.1.10.000018
ORF1ab/nsp3944L944TCTtACt11B.1.10.000018
ORF1ab/nsp3944L944PcTtcCt11B.1.10.000018
ORF1ab/nsp3944L944FCttTtt11B.1.1.100.001115
ORF1ab/nsp3944L944delCTT---11B.1.1.1420.017544
ORF1ab/nsp3944L944FCttTtt11B.1.1.1740.003378
ORF1ab/nsp3944L944ICttAtt11B.1.1.2200.001859
ORF1ab/nsp3944L944PcTtcCt11B.1.1.3060.000438
ORF1ab/nsp3944L944FCttTtt11B.1.1.330.000421
ORF1ab/nsp3944L944ICttAtt11B.1.1.4340.000349
ORF1ab/nsp3944L944RcTtcGt11B.1.1.4340.000349
ORF1ab/nsp3944L944RcTtcGt11B.1.1.4860.001577
ORF1ab/nsp3944L944FCttTtt11B.1.1.4860.001577
ORF1ab/nsp3944L944PcTtcCt11B.1.1.70.000001
ORF1ab/nsp3944L944HcTtcAt11B.1.1.70.000001
ORF1ab/nsp3944L944DCTTGAC11B.1.1.70.000001
ORF1ab/nsp3944L944del2cTTc--11B.1.1.70.000001
ORF1ab/nsp3944L944GCTtGGt11B.1.1.70.000001
ORF1ab/nsp3944L944LctTctA11B.1.1.700.000341
ORF1ab/nsp3944L944FCttTtt11B.1.1110.001175
ORF1ab/nsp3944L944delCTT---11B.1.1600.000031
ORF1ab/nsp3944L944FCttTtt11B.1.1770.000013
ORF1ab/nsp3944L944MCtTAtG11B.1.1770.000013
ORF1ab/nsp3944L944FCttTtt11B.1.177.600.000218
ORF1ab/nsp3944L944ICttAtt11B.1.177.810.000189
ORF1ab/nsp3944L944delCTT---11B.1.20.000009
ORF1ab/nsp3944L944HcTtcAt11B.1.20.000009
ORF1ab/nsp3944L944ICttAtt11B.1.2210.000071
ORF1ab/nsp3944L944FCttTtt11B.1.2320.000537
ORF1ab/nsp3944L944FCttTtt11B.1.2340.000132
ORF1ab/nsp3944L944FCttTtt11B.1.2430.00007
ORF1ab/nsp3944L944ICttAtt11B.1.2580.000067
ORF1ab/nsp3944L944delCTT---11B.1.2580.000067
ORF1ab/nsp3944L944del1ctTct-11B.1.258.170.000104
ORF1ab/nsp3944L944delCTT---11B.1.3190.003049
ORF1ab/nsp3944L944RcTtcGt11B.1.3200.001245
ORF1ab/nsp3944L944FCttTtt11B.1.3200.001245
ORF1ab/nsp3944L944FCttTtt11B.1.3490.000715
ORF1ab/nsp3944L944FCttTtt11B.1.3510.00003
ORF1ab/nsp3944L944FCttTtt11B.1.360.000146
ORF1ab/nsp3944L944LctTctC11B.1.36.190.009259
ORF1ab/nsp3944L944FCttTtt11B.1.3690.000285
ORF1ab/nsp3944L944LctTctC11B.1.4000.000429
ORF1ab/nsp3944L944HcTTcAC11B.1.4110.003704
ORF1ab/nsp3944L944FCttTtt11B.1.438.10.000107
ORF1ab/nsp3944L944LctTctC11B.1.4590.004082
ORF1ab/nsp3944L944LctTctC11B.1.4940.034483
ORF1ab/nsp3944L944LctTctC11B.1.5260.000024
ORF1ab/nsp3944L944FCttTtt11B.1.5380.008065
ORF1ab/nsp3944L944FCttTtt11B.1.564.10.001577
ORF1ab/nsp3944L944LctTctC11B.1.5740.002151
ORF1ab/nsp3944L944FCttTtt11B.1.5750.000303
ORF1ab/nsp3944L944ICttAtt11B.1.5760.000907
ORF1ab/nsp3944L944FCttTtt11B.1.5810.009434
ORF1ab/nsp3944L944FCttTtt11B.1.5880.00091
ORF1ab/nsp3944L944KCTTAAA11B.1.617.20.000004
ORF1ab/nsp3944L944ICttAtt11B.1.6230.000536
ORF1ab/nsp3944L944VCttGtt11B.1.6360.006711
ORF1ab/nsp3944L944ICttAtt11B.1.6370.000073
ORF1ab/nsp3944L944delCTT---11B.150.017544
ORF1ab/nsp3944L944LctTctA11B.400.000364
ORF1ab/nsp3944L944FCttTtt11B.60.00091
ORF1ab/nsp3944L944FCttTtt11D.20.000075
ORF1ab/nsp3944L944PcTtcCt11P.1.140.000048
ORF1ab/nsp3944L944FCttTtt11P.1.170.000162
ORF1ab/nsp3944L944ICttAtt11P.1.170.000162
ORF1ab/nsp3944L944FCttTtt11P.30.001595
ORF1ab/nsp3944L944FCttTtt11Q.80.000165
ORF1ab/nsp3944L944LctTctC11Q.80.000165