CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 940

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3940Q940QQ1758QsyncaGcaA114091140915537-5539
ORF1ab/nsp3940Q940HQ1758HnonsyncaGcaT318531810.9987445537-5539
ORF1ab/nsp3940Q940HQ1758HnonsyncaGcaC318540.001255895537-5539
ORF1ab/nsp3940Q940RQ1758RnonsyncAgcGg1571540.9808925537-5539
ORF1ab/nsp3940Q940RQ1758RnonsyncAGcGT15720.01273895537-5539
ORF1ab/nsp3940Q940RQ1758RnonsynCAGAGA15710.006369435537-5539
ORF1ab/nsp3940Q940LQ1758LnonsyncAgcTg898915537-5539
ORF1ab/nsp3940Q940KQ1758KnonsynCagAag59580.9830515537-5539
ORF1ab/nsp3940Q940KQ1758KnonsynCaGAaA5910.01694925537-5539
ORF1ab/nsp3940Q940delQ1758deldelCAG---202015537-5539
ORF1ab/nsp3940Q940EQ1758EnonsynCagGag181815537-5539
ORF1ab/nsp3940Q940XQ1758XnonsynCagTag9915537-5539
ORF1ab/nsp3940Q940SQ1758SnonsynCAGAGC4415537-5539
ORF1ab/nsp3940Q940VQ1758VnonsynCAGGTA2215537-5539
ORF1ab/nsp3940Q940PQ1758PnonsyncAgcCg2215537-5539
ORF1ab/nsp3940Q940del1Q1758del1delcAgc-g210.55537-5539
ORF1ab/nsp3940Q940del1Q1758del1delCag-ag210.55537-5539

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3940Q940QcaGcaA1140911409All0.002182
ORF1ab/nsp3940Q940QcaGcaA82398239AY.740.952816
ORF1ab/nsp3940Q940HcaGcaT31813185All0.000608
ORF1ab/nsp3940Q940HcaGcaC43185All0.000001
ORF1ab/nsp3940Q940HcaGcaT29342934AY.250.017647
ORF1ab/nsp3940Q940QcaGcaA846846AY.730.562874
ORF1ab/nsp3940Q940QcaGcaA716716AY.720.97415
ORF1ab/nsp3940Q940QcaGcaA278278B.1.1.70.000249
ORF1ab/nsp3940Q940QcaGcaA269269B.1.1.2051
ORF1ab/nsp3940Q940QcaGcaA194194AY.40.000302
ORF1ab/nsp3940Q940RcAgcGg154157All0.000029
ORF1ab/nsp3940Q940RcAGcGT2157All0
ORF1ab/nsp3940Q940RCAGAGA1157All0
ORF1ab/nsp3940Q940QcaGcaA106106B.1.617.20.000399
ORF1ab/nsp3940Q940LcAgcTg8989All0.000017
ORF1ab/nsp3940Q940QcaGcaA8585AZ.20.069787
ORF1ab/nsp3940Q940QcaGcaA7070B.1.3750.057377
ORF1ab/nsp3940Q940QcaGcaA6060AY.470.001866
ORF1ab/nsp3940Q940KCagAag5859All0.000011
ORF1ab/nsp3940Q940KCaGAaA159All0
ORF1ab/nsp3940Q940LcAgcTg5353AY.75.10.009556
ORF1ab/nsp3940Q940QcaGcaA4545AY.30.000448
ORF1ab/nsp3940Q940QcaGcaA4040B.1.617.10.005159
ORF1ab/nsp3940Q940QcaGcaA3737AY.210.070209
ORF1ab/nsp3940Q940HcaGcaT3535B.1.1.70.000031
ORF1ab/nsp3940Q940QcaGcaA3535P.10.000551
ORF1ab/nsp3940Q940HcaGcaT3434B.1.617.20.000128
ORF1ab/nsp3940Q940KCagAag3030AY.4.20.000651
ORF1ab/nsp3940Q940RcAgcGg3030B.1.20.000264
ORF1ab/nsp3940Q940HcaGcaT2929AY.40.000045
ORF1ab/nsp3940Q940QcaGcaA2828B.10.000256
ORF1ab/nsp3940Q940QcaGcaA2525AY.450.003042
ORF1ab/nsp3940Q940QcaGcaA2525B.1.1.2310.077399
ORF1ab/nsp3940Q940RcAgcGg2121AY.40.000033
ORF1ab/nsp3940Q940LcAgcTg2121B.1.1.260.109948
ORF1ab/nsp3940Q940delCAG---2020All0.000004
ORF1ab/nsp3940Q940QcaGcaA2020AY.1030.000124
ORF1ab/nsp3940Q940ECagGag1818All0.000003
ORF1ab/nsp3940Q940QcaGcaA1717AY.250.000102
ORF1ab/nsp3940Q940QcaGcaA1717B.1.20.00015
ORF1ab/nsp3940Q940RcAgcGg1717B.1.5730.103659
ORF1ab/nsp3940Q940RcAgcGg1717B.1.617.20.000064
ORF1ab/nsp3940Q940RcAgcGg1616B.1.1.70.000014
ORF1ab/nsp3940Q940HcaGcaT1414AY.1140.003235
ORF1ab/nsp3940Q940QcaGcaA1414AY.260.000396
ORF1ab/nsp3940Q940HcaGcaT1414AY.430.000062
ORF1ab/nsp3940Q940QcaGcaA1313AY.240.005603
ORF1ab/nsp3940Q940KCagAag1212AY.440.000073
ORF1ab/nsp3940Q940QcaGcaA1111AY.1190.000388
ORF1ab/nsp3940Q940HcaGcaT1111AY.390.000272
ORF1ab/nsp3940Q940HcaGcaT1111B.1.4290.000259
ORF1ab/nsp3940Q940QcaGcaA1010AY.440.000061
ORF1ab/nsp3940Q940QcaGcaA1010B.1.177.70.001649
ORF1ab/nsp3940Q940XCagTag99All0.000002
ORF1ab/nsp3940Q940HcaGcaT99AY.440.000055
ORF1ab/nsp3940Q940QcaGcaA99AY.550.008257
ORF1ab/nsp3940Q940HcaGcaT77AY.470.000218
ORF1ab/nsp3940Q940QcaGcaA77AY.5.30.002362
ORF1ab/nsp3940Q940RcAgcGg66AY.430.000027
ORF1ab/nsp3940Q940QcaGcaA66AY.75.10.001082
ORF1ab/nsp3940Q940QcaGcaA66B.1.1770.000079
ORF1ab/nsp3940Q940QcaGcaA66B.1.3510.000178
ORF1ab/nsp3940Q940HcaGcaT55AY.1170.000423
ORF1ab/nsp3940Q940RcAgcGg55AY.250.00003
ORF1ab/nsp3940Q940QcaGcaA55AY.430.000022
ORF1ab/nsp3940Q940QcaGcaA55AY.610.000524
ORF1ab/nsp3940Q940QcaGcaA55AY.650.002665
ORF1ab/nsp3940Q940QcaGcaA55AY.750.00028
ORF1ab/nsp3940Q940QcaGcaA55AY.90.000338
ORF1ab/nsp3940Q940RcAgcGg55AY.920.001436
ORF1ab/nsp3940Q940QcaGcaA55B.1.10.000091
ORF1ab/nsp3940Q940QcaGcaA55B.1.1.5190.000199
ORF1ab/nsp3940Q940HcaGcaT35B.1.20.000026
ORF1ab/nsp3940Q940HcaGcaC25B.1.20.000018
ORF1ab/nsp3940Q940SCAGAGC44All0.000001
ORF1ab/nsp3940Q940HcaGcaT44AY.1030.000025
ORF1ab/nsp3940Q940QcaGcaA44AY.116.10.001246
ORF1ab/nsp3940Q940HcaGcaT44AY.200.000155
ORF1ab/nsp3940Q940RcAgcGg44AY.4.20.000087
ORF1ab/nsp3940Q940QcaGcaA44AY.420.000161
ORF1ab/nsp3940Q940QcaGcaA44AY.460.000416
ORF1ab/nsp3940Q940QcaGcaA44AY.590.002119
ORF1ab/nsp3940Q940QcaGcaA44AY.710.0019
ORF1ab/nsp3940Q940HcaGcaT44AY.750.000224
ORF1ab/nsp3940Q940QcaGcaA44AY.9.20.000147
ORF1ab/nsp3940Q940delCAG---44B.1.1.70.000004
ORF1ab/nsp3940Q940RcAgcGg44B.1.4290.000094
ORF1ab/nsp3940Q940ECagGag44B.1.617.20.000015
ORF1ab/nsp3940Q940QcaGcaA44P.1.70.001277
ORF1ab/nsp3940Q940LcAgcTg33AY.1030.000019
ORF1ab/nsp3940Q940HcaGcaT33AY.1190.000106
ORF1ab/nsp3940Q940ECagGag33AY.1200.000112
ORF1ab/nsp3940Q940RcAgcGg33AY.200.000117
ORF1ab/nsp3940Q940ECagGag33AY.260.000085
ORF1ab/nsp3940Q940HcaGcaT33AY.290.000047
ORF1ab/nsp3940Q940HcaGcaT33AY.30.00003
ORF1ab/nsp3940Q940delCAG---33AY.40.000005
ORF1ab/nsp3940Q940ECagGag33AY.440.000018
ORF1ab/nsp3940Q940KCagAag33AY.46.60.000217
ORF1ab/nsp3940Q940HcaGcaT33AY.46.60.000217
ORF1ab/nsp3940Q940HcaGcaT33AY.50.000062
ORF1ab/nsp3940Q940QcaGcaA33AY.620.001307
ORF1ab/nsp3940Q940QcaGcaA33AY.880.002653
ORF1ab/nsp3940Q940QcaGcaA33AY.98.10.000145
ORF1ab/nsp3940Q940QcaGcaA33B.1.1.280.000934
ORF1ab/nsp3940Q940HcaGcaT33B.1.1.3180.000905
ORF1ab/nsp3940Q940KCagAag33B.1.1.70.000003
ORF1ab/nsp3940Q940QcaGcaA33B.1.5260.000071
ORF1ab/nsp3940Q940QcaGcaA33B.1.5960.000261
ORF1ab/nsp3940Q940HcaGcaT33B.1.5960.000261
ORF1ab/nsp3940Q940HcaGcaT33B.1.6370.000219
ORF1ab/nsp3940Q940RcAGcGT220.111111
ORF1ab/nsp3940Q940HcaGcaT220.111111
ORF1ab/nsp3940Q940VCAGGTA220.111111
ORF1ab/nsp3940Q940KCaGAaA120.055556
ORF1ab/nsp3940Q940KCagAag120.055556
ORF1ab/nsp3940Q940VCAGGTA22All0
ORF1ab/nsp3940Q940PcAgcCg22All0
ORF1ab/nsp3940Q940del1cAgc-g12All0
ORF1ab/nsp3940Q940del1Cag-ag12All0
ORF1ab/nsp3940Q940QcaGcaA22AY.1000.000092
ORF1ab/nsp3940Q940HcaGcaT22AY.1020.000053
ORF1ab/nsp3940Q940RcAgcGg22AY.1030.000012
ORF1ab/nsp3940Q940QcaGcaA22AY.1100.000225
ORF1ab/nsp3940Q940QcaGcaA22AY.1130.000285
ORF1ab/nsp3940Q940QcaGcaA22AY.130.000322
ORF1ab/nsp3940Q940QcaGcaA22AY.140.000176
ORF1ab/nsp3940Q940HcaGcaT22AY.230.000139
ORF1ab/nsp3940Q940QcaGcaA22AY.230.000139
ORF1ab/nsp3940Q940QcaGcaA22AY.290.000032
ORF1ab/nsp3940Q940LcAgcTg22AY.40.000003
ORF1ab/nsp3940Q940HcaGcaT22AY.4.20.000043
ORF1ab/nsp3940Q940QcaGcaA22AY.4.20.000043
ORF1ab/nsp3940Q940HcaGcaT22AY.420.00008
ORF1ab/nsp3940Q940HcaGcaT22AY.450.000243
ORF1ab/nsp3940Q940HcaGcaT22AY.460.000208
ORF1ab/nsp3940Q940QcaGcaA22AY.480.00093
ORF1ab/nsp3940Q940QcaGcaA22AY.670.000929
ORF1ab/nsp3940Q940RcAgcGg22AY.98.10.000097
ORF1ab/nsp3940Q940QcaGcaA22B0.000256
ORF1ab/nsp3940Q940SCAGAGC22B.10.000018
ORF1ab/nsp3940Q940LcAgcTg22B.1.10.000036
ORF1ab/nsp3940Q940QcaGcaA22B.1.1.3180.000604
ORF1ab/nsp3940Q940HcaGcaT22B.1.1.5190.000079
ORF1ab/nsp3940Q940LcAgcTg22B.1.1.70.000002
ORF1ab/nsp3940Q940QcaGcaA22B.1.177.450.000762
ORF1ab/nsp3940Q940XCagTag22B.1.20.000018
ORF1ab/nsp3940Q940HcaGcaC12B.1.2580.000067
ORF1ab/nsp3940Q940HcaGcaT12B.1.2580.000067
ORF1ab/nsp3940Q940HcaGcaT22B.1.3510.000059
ORF1ab/nsp3940Q940delCAG---22B.1.360.000292
ORF1ab/nsp3940Q940QcaGcaA22B.1.5250.000226
ORF1ab/nsp3940Q940SCAGAGC22B.1.5250.000226
ORF1ab/nsp3940Q940QcaGcaA22B.1.5750.000607
ORF1ab/nsp3940Q940QcaGcaA22P.1.140.000096
ORF1ab/nsp3940Q940QcaGcaA22P.20.000373
ORF1ab/nsp3940Q940PcAgcCg110.055556
ORF1ab/nsp3940Q940QcaGcaA110.055556
ORF1ab/nsp3940Q940QcaGcaA11A.10.000282
ORF1ab/nsp3940Q940delCAG---11A.2.20.001689
ORF1ab/nsp3940Q940QcaGcaA11A.2.50.000499
ORF1ab/nsp3940Q940QcaGcaA11AE.80.000489
ORF1ab/nsp3940Q940HcaGcaT11AY.1000.000046
ORF1ab/nsp3940Q940KCagAag11AY.1020.000027
ORF1ab/nsp3940Q940QcaGcaA11AY.1020.000027
ORF1ab/nsp3940Q940XCagTag11AY.1030.000006
ORF1ab/nsp3940Q940QcaGcaA11AY.1060.000335
ORF1ab/nsp3940Q940RcAgcGg11AY.1070.000466
ORF1ab/nsp3940Q940delCAG---11AY.1080.001103
ORF1ab/nsp3940Q940HcaGcaT11AY.1160.000287
ORF1ab/nsp3940Q940QcaGcaA11AY.1170.000085
ORF1ab/nsp3940Q940RcAgcGg11AY.120.000316
ORF1ab/nsp3940Q940QcaGcaA11AY.1200.000037
ORF1ab/nsp3940Q940RcAgcGg11AY.1200.000037
ORF1ab/nsp3940Q940QcaGcaA11AY.160.00038
ORF1ab/nsp3940Q940QcaGcaA11AY.200.000039
ORF1ab/nsp3940Q940KCagAag11AY.250.000006
ORF1ab/nsp3940Q940ECagGag11AY.250.000006
ORF1ab/nsp3940Q940HcaGcaT11AY.260.000028
ORF1ab/nsp3940Q940delCAG---11AY.260.000028
ORF1ab/nsp3940Q940HcaGcaT11AY.270.000065
ORF1ab/nsp3940Q940QcaGcaA11AY.280.00189
ORF1ab/nsp3940Q940RcAgcGg11AY.30.00001
ORF1ab/nsp3940Q940QcaGcaA11AY.300.000396
ORF1ab/nsp3940Q940LcAgcTg11AY.330.000067
ORF1ab/nsp3940Q940HcaGcaT11AY.330.000067
ORF1ab/nsp3940Q940RcAgcGg11AY.340.000097
ORF1ab/nsp3940Q940HcaGcaT11AY.360.000148
ORF1ab/nsp3940Q940QcaGcaA11AY.380.000499
ORF1ab/nsp3940Q940KCagAag11AY.40.000002
ORF1ab/nsp3940Q940QcaGcaA11AY.4.40.000409
ORF1ab/nsp3940Q940QcaGcaA11AY.400.000964
ORF1ab/nsp3940Q940QcaGcaA11AY.410.000294
ORF1ab/nsp3940Q940RcAgcGg11AY.420.00004
ORF1ab/nsp3940Q940delCAG---11AY.430.000004
ORF1ab/nsp3940Q940RcAgcGg11AY.440.000006
ORF1ab/nsp3940Q940XCagTag11AY.440.000006
ORF1ab/nsp3940Q940RcAgcGg11AY.460.000104
ORF1ab/nsp3940Q940RcAgcGg11AY.46.10.001027
ORF1ab/nsp3940Q940RcAgcGg11AY.50.000021
ORF1ab/nsp3940Q940QcaGcaA11AY.510.000909
ORF1ab/nsp3940Q940QcaGcaA11AY.530.000288
ORF1ab/nsp3940Q940RcAgcGg11AY.540.000095
ORF1ab/nsp3940Q940QcaGcaA11AY.540.000095
ORF1ab/nsp3940Q940HcaGcaT11AY.550.000917
ORF1ab/nsp3940Q940QcaGcaA11AY.580.000907
ORF1ab/nsp3940Q940RcAgcGg11AY.60.000041
ORF1ab/nsp3940Q940HcaGcaT11AY.60.000041
ORF1ab/nsp3940Q940QcaGcaA11AY.600.000938
ORF1ab/nsp3940Q940HcaGcaT11AY.620.000436
ORF1ab/nsp3940Q940delCAG---11AY.660.00107
ORF1ab/nsp3940Q940QcaGcaA11AY.680.000274
ORF1ab/nsp3940Q940QcaGcaA11AY.690.000187
ORF1ab/nsp3940Q940QcaGcaA11AY.80.000606
ORF1ab/nsp3940Q940QcaGcaA11AY.9.10.000084
ORF1ab/nsp3940Q940QcaGcaA11AY.900.000684
ORF1ab/nsp3940Q940HcaGcaT11AY.920.000287
ORF1ab/nsp3940Q940HcaGcaT11AY.99.20.000092
ORF1ab/nsp3940Q940QcaGcaA11AY.99.20.000092
ORF1ab/nsp3940Q940RcAgcGg11B0.000128
ORF1ab/nsp3940Q940HcaGcaT11B.10.000009
ORF1ab/nsp3940Q940KCagAag11B.10.000009
ORF1ab/nsp3940Q940ECagGag11B.10.000009
ORF1ab/nsp3940Q940RcAgcGg11B.10.000009
ORF1ab/nsp3940Q940XCagTag11B.1.10.000018
ORF1ab/nsp3940Q940XCagTag11B.1.1.100.001115
ORF1ab/nsp3940Q940delCAG---11B.1.1.1420.017544
ORF1ab/nsp3940Q940QcaGcaA11B.1.1.2040.00304
ORF1ab/nsp3940Q940LcAgcTg11B.1.1.2220.000204
ORF1ab/nsp3940Q940XCagTag11B.1.1.250.000569
ORF1ab/nsp3940Q940QcaGcaA11B.1.1.3050.003861
ORF1ab/nsp3940Q940QcaGcaA11B.1.1.3060.000438
ORF1ab/nsp3940Q940QcaGcaA11B.1.1.3110.000358
ORF1ab/nsp3940Q940QcaGcaA11B.1.1.3730.02381
ORF1ab/nsp3940Q940ECagGag11B.1.1.390.00051
ORF1ab/nsp3940Q940QcaGcaA11B.1.1.3980.003226
ORF1ab/nsp3940Q940RcAgcGg11B.1.1.500.000679
ORF1ab/nsp3940Q940ECagGag11B.1.1.70.000001
ORF1ab/nsp3940Q940HcaGcaT11B.1.1580.02381
ORF1ab/nsp3940Q940delCAG---11B.1.1600.000031
ORF1ab/nsp3940Q940PcAgcCg11B.1.1600.000031
ORF1ab/nsp3940Q940QcaGcaA11B.1.160.280.002924
ORF1ab/nsp3940Q940HcaGcaT11B.1.1770.000013
ORF1ab/nsp3940Q940RcAgcGg11B.1.1770.000013
ORF1ab/nsp3940Q940RcAgcGg11B.1.177.100.000878
ORF1ab/nsp3940Q940QcaGcaA11B.1.177.210.000076
ORF1ab/nsp3940Q940RcAgcGg11B.1.177.320.00135
ORF1ab/nsp3940Q940QcaGcaA11B.1.177.810.000189
ORF1ab/nsp3940Q940QcaGcaA11B.1.177.860.000183
ORF1ab/nsp3940Q940KCagAag11B.1.20.000009
ORF1ab/nsp3940Q940ECagGag11B.1.20.000009
ORF1ab/nsp3940Q940LcAgcTg11B.1.20.000009
ORF1ab/nsp3940Q940delCAG---11B.1.20.000009
ORF1ab/nsp3940Q940QcaGcaA11B.1.2180.005155
ORF1ab/nsp3940Q940HcaGcaT11B.1.2210.000071
ORF1ab/nsp3940Q940KCagAag11B.1.2220.001692
ORF1ab/nsp3940Q940QcaGcaA11B.1.2340.000132
ORF1ab/nsp3940Q940HcaGcaT11B.1.2350.002519
ORF1ab/nsp3940Q940QcaGcaA11B.1.2430.00007
ORF1ab/nsp3940Q940RcAgcGg11B.1.2500.014493
ORF1ab/nsp3940Q940QcaGcaA11B.1.2580.000067
ORF1ab/nsp3940Q940QcaGcaA11B.1.258.170.000104
ORF1ab/nsp3940Q940HcaGcaC11B.1.3110.000275
ORF1ab/nsp3940Q940delCAG---11B.1.3190.003049
ORF1ab/nsp3940Q940QcaGcaA11B.1.3200.001245
ORF1ab/nsp3940Q940XCagTag11B.1.3380.008621
ORF1ab/nsp3940Q940LcAgcTg11B.1.3510.00003
ORF1ab/nsp3940Q940RcAgcGg11B.1.36.360.000602
ORF1ab/nsp3940Q940QcaGcaA11B.1.3670.000792
ORF1ab/nsp3940Q940del1cAgc-g11B.1.3690.000285
ORF1ab/nsp3940Q940RCAGAGA11B.1.4110.003704
ORF1ab/nsp3940Q940XCagTag11B.1.4270.00005
ORF1ab/nsp3940Q940QcaGcaA11B.1.4290.000024
ORF1ab/nsp3940Q940HcaGcaT11B.1.4800.002488
ORF1ab/nsp3940Q940HcaGcaT11B.1.4990.00105
ORF1ab/nsp3940Q940KCagAag11B.1.5960.000087
ORF1ab/nsp3940Q940QcaGcaA11B.1.6090.000479
ORF1ab/nsp3940Q940delCAG---11B.1.617.20.000004
ORF1ab/nsp3940Q940del1Cag-ag11B.1.617.20.000004
ORF1ab/nsp3940Q940KCagAag11B.1.617.20.000004
ORF1ab/nsp3940Q940LcAgcTg11B.1.617.20.000004
ORF1ab/nsp3940Q940HcaGcaT11B.1.6210.000089
ORF1ab/nsp3940Q940LcAgcTg11B.1.6210.000089
ORF1ab/nsp3940Q940QcaGcaA11B.1.6260.005714
ORF1ab/nsp3940Q940QcaGcaA11B.1.6370.000073
ORF1ab/nsp3940Q940delCAG---11B.150.017544
ORF1ab/nsp3940Q940HcaGcaT11B.390.002331
ORF1ab/nsp3940Q940QcaGcaA11B.430.014286
ORF1ab/nsp3940Q940RcAgcGg11D.20.000075
ORF1ab/nsp3940Q940QcaGcaA11D.20.000075
ORF1ab/nsp3940Q940RcAgcGg11P.10.000016
ORF1ab/nsp3940Q940KCagAag11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.