CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 940 | Q940Q | Q1758Q | syn | caG | caA | 11409 | 11409 | 1 | 5537-5539 |
ORF1ab/nsp3 | 940 | Q940H | Q1758H | nonsyn | caG | caT | 3185 | 3181 | 0.998744 | 5537-5539 |
ORF1ab/nsp3 | 940 | Q940H | Q1758H | nonsyn | caG | caC | 3185 | 4 | 0.00125589 | 5537-5539 |
ORF1ab/nsp3 | 940 | Q940R | Q1758R | nonsyn | cAg | cGg | 157 | 154 | 0.980892 | 5537-5539 |
ORF1ab/nsp3 | 940 | Q940R | Q1758R | nonsyn | cAG | cGT | 157 | 2 | 0.0127389 | 5537-5539 |
ORF1ab/nsp3 | 940 | Q940R | Q1758R | nonsyn | CAG | AGA | 157 | 1 | 0.00636943 | 5537-5539 |
ORF1ab/nsp3 | 940 | Q940L | Q1758L | nonsyn | cAg | cTg | 89 | 89 | 1 | 5537-5539 |
ORF1ab/nsp3 | 940 | Q940K | Q1758K | nonsyn | Cag | Aag | 59 | 58 | 0.983051 | 5537-5539 |
ORF1ab/nsp3 | 940 | Q940K | Q1758K | nonsyn | CaG | AaA | 59 | 1 | 0.0169492 | 5537-5539 |
ORF1ab/nsp3 | 940 | Q940del | Q1758del | del | CAG | --- | 20 | 20 | 1 | 5537-5539 |
ORF1ab/nsp3 | 940 | Q940E | Q1758E | nonsyn | Cag | Gag | 18 | 18 | 1 | 5537-5539 |
ORF1ab/nsp3 | 940 | Q940X | Q1758X | nonsyn | Cag | Tag | 9 | 9 | 1 | 5537-5539 |
ORF1ab/nsp3 | 940 | Q940S | Q1758S | nonsyn | CAG | AGC | 4 | 4 | 1 | 5537-5539 |
ORF1ab/nsp3 | 940 | Q940V | Q1758V | nonsyn | CAG | GTA | 2 | 2 | 1 | 5537-5539 |
ORF1ab/nsp3 | 940 | Q940P | Q1758P | nonsyn | cAg | cCg | 2 | 2 | 1 | 5537-5539 |
ORF1ab/nsp3 | 940 | Q940del1 | Q1758del1 | del | cAg | c-g | 2 | 1 | 0.5 | 5537-5539 |
ORF1ab/nsp3 | 940 | Q940del1 | Q1758del1 | del | Cag | -ag | 2 | 1 | 0.5 | 5537-5539 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 11409 | 11409 | All | 0.002182 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 8239 | 8239 | AY.74 | 0.952816 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 3181 | 3185 | All | 0.000608 |
ORF1ab/nsp3 | 940 | Q940H | caG | caC | 4 | 3185 | All | 0.000001 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 2934 | 2934 | AY.25 | 0.017647 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 846 | 846 | AY.73 | 0.562874 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 716 | 716 | AY.72 | 0.97415 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 278 | 278 | B.1.1.7 | 0.000249 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 269 | 269 | B.1.1.205 | 1 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 194 | 194 | AY.4 | 0.000302 |
ORF1ab/nsp3 | 940 | Q940R | cAg | cGg | 154 | 157 | All | 0.000029 |
ORF1ab/nsp3 | 940 | Q940R | cAG | cGT | 2 | 157 | All | 0 |
ORF1ab/nsp3 | 940 | Q940R | CAG | AGA | 1 | 157 | All | 0 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 106 | 106 | B.1.617.2 | 0.000399 |
ORF1ab/nsp3 | 940 | Q940L | cAg | cTg | 89 | 89 | All | 0.000017 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 85 | 85 | AZ.2 | 0.069787 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 70 | 70 | B.1.375 | 0.057377 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 60 | 60 | AY.47 | 0.001866 |
ORF1ab/nsp3 | 940 | Q940K | Cag | Aag | 58 | 59 | All | 0.000011 |
ORF1ab/nsp3 | 940 | Q940K | CaG | AaA | 1 | 59 | All | 0 |
ORF1ab/nsp3 | 940 | Q940L | cAg | cTg | 53 | 53 | AY.75.1 | 0.009556 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 45 | 45 | AY.3 | 0.000448 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 40 | 40 | B.1.617.1 | 0.005159 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 37 | 37 | AY.21 | 0.070209 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 35 | 35 | B.1.1.7 | 0.000031 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 35 | 35 | P.1 | 0.000551 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 34 | 34 | B.1.617.2 | 0.000128 |
ORF1ab/nsp3 | 940 | Q940K | Cag | Aag | 30 | 30 | AY.4.2 | 0.000651 |
ORF1ab/nsp3 | 940 | Q940R | cAg | cGg | 30 | 30 | B.1.2 | 0.000264 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 29 | 29 | AY.4 | 0.000045 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 28 | 28 | B.1 | 0.000256 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 25 | 25 | AY.45 | 0.003042 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 25 | 25 | B.1.1.231 | 0.077399 |
ORF1ab/nsp3 | 940 | Q940R | cAg | cGg | 21 | 21 | AY.4 | 0.000033 |
ORF1ab/nsp3 | 940 | Q940L | cAg | cTg | 21 | 21 | B.1.1.26 | 0.109948 |
ORF1ab/nsp3 | 940 | Q940del | CAG | --- | 20 | 20 | All | 0.000004 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 20 | 20 | AY.103 | 0.000124 |
ORF1ab/nsp3 | 940 | Q940E | Cag | Gag | 18 | 18 | All | 0.000003 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 17 | 17 | AY.25 | 0.000102 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 17 | 17 | B.1.2 | 0.00015 |
ORF1ab/nsp3 | 940 | Q940R | cAg | cGg | 17 | 17 | B.1.573 | 0.103659 |
ORF1ab/nsp3 | 940 | Q940R | cAg | cGg | 17 | 17 | B.1.617.2 | 0.000064 |
ORF1ab/nsp3 | 940 | Q940R | cAg | cGg | 16 | 16 | B.1.1.7 | 0.000014 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 14 | 14 | AY.114 | 0.003235 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 14 | 14 | AY.26 | 0.000396 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 14 | 14 | AY.43 | 0.000062 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 13 | 13 | AY.24 | 0.005603 |
ORF1ab/nsp3 | 940 | Q940K | Cag | Aag | 12 | 12 | AY.44 | 0.000073 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 11 | 11 | AY.119 | 0.000388 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 11 | 11 | AY.39 | 0.000272 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 11 | 11 | B.1.429 | 0.000259 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 10 | 10 | AY.44 | 0.000061 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 10 | 10 | B.1.177.7 | 0.001649 |
ORF1ab/nsp3 | 940 | Q940X | Cag | Tag | 9 | 9 | All | 0.000002 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 9 | 9 | AY.44 | 0.000055 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 9 | 9 | AY.55 | 0.008257 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 7 | 7 | AY.47 | 0.000218 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 7 | 7 | AY.5.3 | 0.002362 |
ORF1ab/nsp3 | 940 | Q940R | cAg | cGg | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 6 | 6 | AY.75.1 | 0.001082 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 6 | 6 | B.1.351 | 0.000178 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 5 | 5 | AY.117 | 0.000423 |
ORF1ab/nsp3 | 940 | Q940R | cAg | cGg | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 5 | 5 | AY.61 | 0.000524 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 5 | 5 | AY.65 | 0.002665 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 5 | 5 | AY.75 | 0.00028 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 5 | 5 | AY.9 | 0.000338 |
ORF1ab/nsp3 | 940 | Q940R | cAg | cGg | 5 | 5 | AY.92 | 0.001436 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 5 | 5 | B.1.1.519 | 0.000199 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 3 | 5 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 940 | Q940H | caG | caC | 2 | 5 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 940 | Q940S | CAG | AGC | 4 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 4 | 4 | AY.116.1 | 0.001246 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp3 | 940 | Q940R | cAg | cGg | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 4 | 4 | AY.42 | 0.000161 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 4 | 4 | AY.46 | 0.000416 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 4 | 4 | AY.59 | 0.002119 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 4 | 4 | AY.71 | 0.0019 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp3 | 940 | Q940del | CAG | --- | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 940 | Q940R | cAg | cGg | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp3 | 940 | Q940E | Cag | Gag | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 4 | 4 | P.1.7 | 0.001277 |
ORF1ab/nsp3 | 940 | Q940L | cAg | cTg | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp3 | 940 | Q940E | Cag | Gag | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp3 | 940 | Q940R | cAg | cGg | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp3 | 940 | Q940E | Cag | Gag | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 940 | Q940del | CAG | --- | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 940 | Q940E | Cag | Gag | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 940 | Q940K | Cag | Aag | 3 | 3 | AY.46.6 | 0.000217 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 3 | 3 | AY.46.6 | 0.000217 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 3 | 3 | AY.62 | 0.001307 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 3 | 3 | AY.88 | 0.002653 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 3 | 3 | B.1.1.318 | 0.000905 |
ORF1ab/nsp3 | 940 | Q940K | Cag | Aag | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 3 | 3 | B.1.637 | 0.000219 |
ORF1ab/nsp3 | 940 | Q940R | cAG | cGT | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 940 | Q940V | CAG | GTA | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 940 | Q940K | CaG | AaA | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 940 | Q940K | Cag | Aag | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 940 | Q940V | CAG | GTA | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 940 | Q940P | cAg | cCg | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 940 | Q940del1 | cAg | c-g | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 940 | Q940del1 | Cag | -ag | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 940 | Q940R | cAg | cGg | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 940 | Q940L | cAg | cTg | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 2 | 2 | AY.48 | 0.00093 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp3 | 940 | Q940R | cAg | cGg | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 2 | 2 | B | 0.000256 |
ORF1ab/nsp3 | 940 | Q940S | CAG | AGC | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 940 | Q940L | cAg | cTg | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 940 | Q940L | cAg | cTg | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 2 | 2 | B.1.177.45 | 0.000762 |
ORF1ab/nsp3 | 940 | Q940X | Cag | Tag | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 940 | Q940H | caG | caC | 1 | 2 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 1 | 2 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 940 | Q940del | CAG | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp3 | 940 | Q940S | CAG | AGC | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp3 | 940 | Q940P | cAg | cCg | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 940 | Q940del | CAG | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 940 | Q940K | Cag | Aag | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 940 | Q940X | Cag | Tag | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 940 | Q940R | cAg | cGg | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 940 | Q940del | CAG | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 940 | Q940R | cAg | cGg | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 940 | Q940R | cAg | cGg | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 940 | Q940K | Cag | Aag | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 940 | Q940E | Cag | Gag | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 940 | Q940del | CAG | --- | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp3 | 940 | Q940R | cAg | cGg | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 940 | Q940L | cAg | cTg | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 940 | Q940R | cAg | cGg | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 940 | Q940K | Cag | Aag | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 940 | Q940R | cAg | cGg | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 940 | Q940del | CAG | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 940 | Q940R | cAg | cGg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 940 | Q940X | Cag | Tag | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 940 | Q940R | cAg | cGg | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 940 | Q940R | cAg | cGg | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 940 | Q940R | cAg | cGg | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 940 | Q940R | cAg | cGg | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp3 | 940 | Q940R | cAg | cGg | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 940 | Q940del | CAG | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 940 | Q940R | cAg | cGg | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 940 | Q940K | Cag | Aag | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 940 | Q940E | Cag | Gag | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 940 | Q940R | cAg | cGg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 940 | Q940X | Cag | Tag | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 940 | Q940X | Cag | Tag | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp3 | 940 | Q940del | CAG | --- | 1 | 1 | B.1.1.142 | 0.017544 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.1.1.204 | 0.00304 |
ORF1ab/nsp3 | 940 | Q940L | cAg | cTg | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 940 | Q940X | Cag | Tag | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.1.1.373 | 0.02381 |
ORF1ab/nsp3 | 940 | Q940E | Cag | Gag | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp3 | 940 | Q940R | cAg | cGg | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp3 | 940 | Q940E | Cag | Gag | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 1 | 1 | B.1.158 | 0.02381 |
ORF1ab/nsp3 | 940 | Q940del | CAG | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 940 | Q940P | cAg | cCg | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.1.160.28 | 0.002924 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 940 | Q940R | cAg | cGg | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 940 | Q940R | cAg | cGg | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 940 | Q940R | cAg | cGg | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 940 | Q940K | Cag | Aag | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 940 | Q940E | Cag | Gag | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 940 | Q940L | cAg | cTg | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 940 | Q940del | CAG | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 940 | Q940K | Cag | Aag | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 1 | 1 | B.1.235 | 0.002519 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 940 | Q940R | cAg | cGg | 1 | 1 | B.1.250 | 0.014493 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 940 | Q940H | caG | caC | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 940 | Q940del | CAG | --- | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp3 | 940 | Q940X | Cag | Tag | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp3 | 940 | Q940L | cAg | cTg | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 940 | Q940R | cAg | cGg | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 940 | Q940del1 | cAg | c-g | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 940 | Q940R | CAG | AGA | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp3 | 940 | Q940X | Cag | Tag | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 1 | 1 | B.1.480 | 0.002488 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp3 | 940 | Q940K | Cag | Aag | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 940 | Q940del | CAG | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 940 | Q940del1 | Cag | -ag | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 940 | Q940K | Cag | Aag | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 940 | Q940L | cAg | cTg | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 940 | Q940L | cAg | cTg | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.1.626 | 0.005714 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 940 | Q940del | CAG | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp3 | 940 | Q940H | caG | caT | 1 | 1 | B.39 | 0.002331 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.43 | 0.014286 |
ORF1ab/nsp3 | 940 | Q940R | cAg | cGg | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 940 | Q940R | cAg | cGg | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 940 | Q940K | Cag | Aag | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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