CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 940

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3940Q940QQ1758QsyncaGcaA114091140915537-5539
ORF1ab/nsp3940Q940HQ1758HnonsyncaGcaT318531810.9987445537-5539
ORF1ab/nsp3940Q940HQ1758HnonsyncaGcaC318540.001255895537-5539
ORF1ab/nsp3940Q940RQ1758RnonsyncAgcGg1571540.9808925537-5539
ORF1ab/nsp3940Q940RQ1758RnonsyncAGcGT15720.01273895537-5539
ORF1ab/nsp3940Q940RQ1758RnonsynCAGAGA15710.006369435537-5539
ORF1ab/nsp3940Q940LQ1758LnonsyncAgcTg898915537-5539
ORF1ab/nsp3940Q940KQ1758KnonsynCagAag59580.9830515537-5539
ORF1ab/nsp3940Q940KQ1758KnonsynCaGAaA5910.01694925537-5539
ORF1ab/nsp3940Q940delQ1758deldelCAG---202015537-5539
ORF1ab/nsp3940Q940EQ1758EnonsynCagGag181815537-5539
ORF1ab/nsp3940Q940XQ1758XnonsynCagTag9915537-5539
ORF1ab/nsp3940Q940SQ1758SnonsynCAGAGC4415537-5539
ORF1ab/nsp3940Q940VQ1758VnonsynCAGGTA2215537-5539
ORF1ab/nsp3940Q940PQ1758PnonsyncAgcCg2215537-5539
ORF1ab/nsp3940Q940del1Q1758del1delcAgc-g210.55537-5539
ORF1ab/nsp3940Q940del1Q1758del1delCag-ag210.55537-5539

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3940Q940QcaGcaA1140911409All0.002182
ORF1ab/nsp3940Q940QcaGcaA82398239AY.740.952816
ORF1ab/nsp3940Q940HcaGcaT31813185All0.000608
ORF1ab/nsp3940Q940HcaGcaC43185All0.000001
ORF1ab/nsp3940Q940HcaGcaT29342934AY.250.017647
ORF1ab/nsp3940Q940QcaGcaA846846AY.730.562874
ORF1ab/nsp3940Q940QcaGcaA716716AY.720.97415
ORF1ab/nsp3940Q940QcaGcaA278278B.1.1.70.000249
ORF1ab/nsp3940Q940QcaGcaA269269B.1.1.2051
ORF1ab/nsp3940Q940QcaGcaA194194AY.40.000302
ORF1ab/nsp3940Q940RcAgcGg154157All0.000029
ORF1ab/nsp3940Q940RcAGcGT2157All0
ORF1ab/nsp3940Q940RCAGAGA1157All0
ORF1ab/nsp3940Q940QcaGcaA106106B.1.617.20.000399
ORF1ab/nsp3940Q940LcAgcTg8989All0.000017
ORF1ab/nsp3940Q940QcaGcaA8585AZ.20.069787
ORF1ab/nsp3940Q940QcaGcaA7070B.1.3750.057377
ORF1ab/nsp3940Q940QcaGcaA6060AY.470.001866
ORF1ab/nsp3940Q940KCagAag5859All0.000011
ORF1ab/nsp3940Q940KCaGAaA159All0
ORF1ab/nsp3940Q940LcAgcTg5353AY.75.10.009556
ORF1ab/nsp3940Q940QcaGcaA4545AY.30.000448
ORF1ab/nsp3940Q940QcaGcaA4040B.1.617.10.005159
ORF1ab/nsp3940Q940QcaGcaA3737AY.210.070209
ORF1ab/nsp3940Q940HcaGcaT3535B.1.1.70.000031
ORF1ab/nsp3940Q940QcaGcaA3535P.10.000551
ORF1ab/nsp3940Q940HcaGcaT3434B.1.617.20.000128
ORF1ab/nsp3940Q940KCagAag3030AY.4.20.000651
ORF1ab/nsp3940Q940RcAgcGg3030B.1.20.000264
ORF1ab/nsp3940Q940HcaGcaT2929AY.40.000045
ORF1ab/nsp3940Q940QcaGcaA2828B.10.000256
ORF1ab/nsp3940Q940QcaGcaA2525AY.450.003042
ORF1ab/nsp3940Q940QcaGcaA2525B.1.1.2310.077399
ORF1ab/nsp3940Q940RcAgcGg2121AY.40.000033
ORF1ab/nsp3940Q940LcAgcTg2121B.1.1.260.109948
ORF1ab/nsp3940Q940delCAG---2020All0.000004
ORF1ab/nsp3940Q940QcaGcaA2020AY.1030.000124
ORF1ab/nsp3940Q940ECagGag1818All0.000003
ORF1ab/nsp3940Q940QcaGcaA1717AY.250.000102
ORF1ab/nsp3940Q940QcaGcaA1717B.1.20.00015
ORF1ab/nsp3940Q940RcAgcGg1717B.1.5730.103659
ORF1ab/nsp3940Q940RcAgcGg1717B.1.617.20.000064
ORF1ab/nsp3940Q940RcAgcGg1616B.1.1.70.000014
ORF1ab/nsp3940Q940HcaGcaT1414AY.1140.003235
ORF1ab/nsp3940Q940QcaGcaA1414AY.260.000396
ORF1ab/nsp3940Q940HcaGcaT1414AY.430.000062
ORF1ab/nsp3940Q940QcaGcaA1313AY.240.005603
ORF1ab/nsp3940Q940KCagAag1212AY.440.000073
ORF1ab/nsp3940Q940QcaGcaA1111AY.1190.000388
ORF1ab/nsp3940Q940HcaGcaT1111AY.390.000272
ORF1ab/nsp3940Q940HcaGcaT1111B.1.4290.000259
ORF1ab/nsp3940Q940QcaGcaA1010AY.440.000061
ORF1ab/nsp3940Q940QcaGcaA1010B.1.177.70.001649
ORF1ab/nsp3940Q940XCagTag99All0.000002
ORF1ab/nsp3940Q940HcaGcaT99AY.440.000055
ORF1ab/nsp3940Q940QcaGcaA99AY.550.008257
ORF1ab/nsp3940Q940HcaGcaT77AY.470.000218
ORF1ab/nsp3940Q940QcaGcaA77AY.5.30.002362
ORF1ab/nsp3940Q940RcAgcGg66AY.430.000027
ORF1ab/nsp3940Q940QcaGcaA66AY.75.10.001082
ORF1ab/nsp3940Q940QcaGcaA66B.1.1770.000079
ORF1ab/nsp3940Q940QcaGcaA66B.1.3510.000178
ORF1ab/nsp3940Q940HcaGcaT55AY.1170.000423
ORF1ab/nsp3940Q940RcAgcGg55AY.250.00003
ORF1ab/nsp3940Q940QcaGcaA55AY.430.000022
ORF1ab/nsp3940Q940QcaGcaA55AY.610.000524
ORF1ab/nsp3940Q940QcaGcaA55AY.650.002665
ORF1ab/nsp3940Q940QcaGcaA55AY.750.00028
ORF1ab/nsp3940Q940QcaGcaA55AY.90.000338
ORF1ab/nsp3940Q940RcAgcGg55AY.920.001436
ORF1ab/nsp3940Q940QcaGcaA55B.1.10.000091
ORF1ab/nsp3940Q940QcaGcaA55B.1.1.5190.000199
ORF1ab/nsp3940Q940HcaGcaT35B.1.20.000026
ORF1ab/nsp3940Q940HcaGcaC25B.1.20.000018
ORF1ab/nsp3940Q940SCAGAGC44All0.000001
ORF1ab/nsp3940Q940HcaGcaT44AY.1030.000025
ORF1ab/nsp3940Q940QcaGcaA44AY.116.10.001246
ORF1ab/nsp3940Q940HcaGcaT44AY.200.000155
ORF1ab/nsp3940Q940RcAgcGg44AY.4.20.000087
ORF1ab/nsp3940Q940QcaGcaA44AY.420.000161
ORF1ab/nsp3940Q940QcaGcaA44AY.460.000416
ORF1ab/nsp3940Q940QcaGcaA44AY.590.002119
ORF1ab/nsp3940Q940QcaGcaA44AY.710.0019
ORF1ab/nsp3940Q940HcaGcaT44AY.750.000224
ORF1ab/nsp3940Q940QcaGcaA44AY.9.20.000147
ORF1ab/nsp3940Q940delCAG---44B.1.1.70.000004
ORF1ab/nsp3940Q940RcAgcGg44B.1.4290.000094
ORF1ab/nsp3940Q940ECagGag44B.1.617.20.000015
ORF1ab/nsp3940Q940QcaGcaA44P.1.70.001277
ORF1ab/nsp3940Q940LcAgcTg33AY.1030.000019
ORF1ab/nsp3940Q940HcaGcaT33AY.1190.000106
ORF1ab/nsp3940Q940ECagGag33AY.1200.000112
ORF1ab/nsp3940Q940RcAgcGg33AY.200.000117
ORF1ab/nsp3940Q940ECagGag33AY.260.000085
ORF1ab/nsp3940Q940HcaGcaT33AY.290.000047
ORF1ab/nsp3940Q940HcaGcaT33AY.30.00003
ORF1ab/nsp3940Q940delCAG---33AY.40.000005
ORF1ab/nsp3940Q940ECagGag33AY.440.000018
ORF1ab/nsp3940Q940KCagAag33AY.46.60.000217
ORF1ab/nsp3940Q940HcaGcaT33AY.46.60.000217
ORF1ab/nsp3940Q940HcaGcaT33AY.50.000062
ORF1ab/nsp3940Q940QcaGcaA33AY.620.001307
ORF1ab/nsp3940Q940QcaGcaA33AY.880.002653
ORF1ab/nsp3940Q940QcaGcaA33AY.98.10.000145
ORF1ab/nsp3940Q940QcaGcaA33B.1.1.280.000934
ORF1ab/nsp3940Q940HcaGcaT33B.1.1.3180.000905
ORF1ab/nsp3940Q940KCagAag33B.1.1.70.000003
ORF1ab/nsp3940Q940QcaGcaA33B.1.5260.000071
ORF1ab/nsp3940Q940QcaGcaA33B.1.5960.000261
ORF1ab/nsp3940Q940HcaGcaT33B.1.5960.000261
ORF1ab/nsp3940Q940HcaGcaT33B.1.6370.000219
ORF1ab/nsp3940Q940RcAGcGT220.111111
ORF1ab/nsp3940Q940HcaGcaT220.111111
ORF1ab/nsp3940Q940VCAGGTA220.111111
ORF1ab/nsp3940Q940KCaGAaA120.055556
ORF1ab/nsp3940Q940KCagAag120.055556
ORF1ab/nsp3940Q940VCAGGTA22All0
ORF1ab/nsp3940Q940PcAgcCg22All0
ORF1ab/nsp3940Q940del1cAgc-g12All0
ORF1ab/nsp3940Q940del1Cag-ag12All0
ORF1ab/nsp3940Q940QcaGcaA22AY.1000.000092
ORF1ab/nsp3940Q940HcaGcaT22AY.1020.000053
ORF1ab/nsp3940Q940RcAgcGg22AY.1030.000012
ORF1ab/nsp3940Q940QcaGcaA22AY.1100.000225
ORF1ab/nsp3940Q940QcaGcaA22AY.1130.000285
ORF1ab/nsp3940Q940QcaGcaA22AY.130.000322
ORF1ab/nsp3940Q940QcaGcaA22AY.140.000176
ORF1ab/nsp3940Q940HcaGcaT22AY.230.000139
ORF1ab/nsp3940Q940QcaGcaA22AY.230.000139
ORF1ab/nsp3940Q940QcaGcaA22AY.290.000032
ORF1ab/nsp3940Q940LcAgcTg22AY.40.000003
ORF1ab/nsp3940Q940HcaGcaT22AY.4.20.000043
ORF1ab/nsp3940Q940QcaGcaA22AY.4.20.000043
ORF1ab/nsp3940Q940HcaGcaT22AY.420.00008
ORF1ab/nsp3940Q940HcaGcaT22AY.450.000243
ORF1ab/nsp3940Q940HcaGcaT22AY.460.000208
ORF1ab/nsp3940Q940QcaGcaA22AY.480.00093
ORF1ab/nsp3940Q940QcaGcaA22AY.670.000929
ORF1ab/nsp3940Q940RcAgcGg22AY.98.10.000097
ORF1ab/nsp3940Q940QcaGcaA22B0.000256
ORF1ab/nsp3940Q940SCAGAGC22B.10.000018
ORF1ab/nsp3940Q940LcAgcTg22B.1.10.000036
ORF1ab/nsp3940Q940QcaGcaA22B.1.1.3180.000604
ORF1ab/nsp3940Q940HcaGcaT22B.1.1.5190.000079
ORF1ab/nsp3940Q940LcAgcTg22B.1.1.70.000002
ORF1ab/nsp3940Q940QcaGcaA22B.1.177.450.000762
ORF1ab/nsp3940Q940XCagTag22B.1.20.000018
ORF1ab/nsp3940Q940HcaGcaC12B.1.2580.000067
ORF1ab/nsp3940Q940HcaGcaT12B.1.2580.000067
ORF1ab/nsp3940Q940HcaGcaT22B.1.3510.000059
ORF1ab/nsp3940Q940delCAG---22B.1.360.000292
ORF1ab/nsp3940Q940QcaGcaA22B.1.5250.000226
ORF1ab/nsp3940Q940SCAGAGC22B.1.5250.000226
ORF1ab/nsp3940Q940QcaGcaA22B.1.5750.000607
ORF1ab/nsp3940Q940QcaGcaA22P.1.140.000096
ORF1ab/nsp3940Q940QcaGcaA22P.20.000373
ORF1ab/nsp3940Q940PcAgcCg110.055556
ORF1ab/nsp3940Q940QcaGcaA110.055556
ORF1ab/nsp3940Q940QcaGcaA11A.10.000282
ORF1ab/nsp3940Q940delCAG---11A.2.20.001689
ORF1ab/nsp3940Q940QcaGcaA11A.2.50.000499
ORF1ab/nsp3940Q940QcaGcaA11AE.80.000489
ORF1ab/nsp3940Q940HcaGcaT11AY.1000.000046
ORF1ab/nsp3940Q940KCagAag11AY.1020.000027
ORF1ab/nsp3940Q940QcaGcaA11AY.1020.000027
ORF1ab/nsp3940Q940XCagTag11AY.1030.000006
ORF1ab/nsp3940Q940QcaGcaA11AY.1060.000335
ORF1ab/nsp3940Q940RcAgcGg11AY.1070.000466
ORF1ab/nsp3940Q940delCAG---11AY.1080.001103
ORF1ab/nsp3940Q940HcaGcaT11AY.1160.000287
ORF1ab/nsp3940Q940QcaGcaA11AY.1170.000085
ORF1ab/nsp3940Q940RcAgcGg11AY.120.000316
ORF1ab/nsp3940Q940QcaGcaA11AY.1200.000037
ORF1ab/nsp3940Q940RcAgcGg11AY.1200.000037
ORF1ab/nsp3940Q940QcaGcaA11AY.160.00038
ORF1ab/nsp3940Q940QcaGcaA11AY.200.000039
ORF1ab/nsp3940Q940KCagAag11AY.250.000006
ORF1ab/nsp3940Q940ECagGag11AY.250.000006
ORF1ab/nsp3940Q940HcaGcaT11AY.260.000028
ORF1ab/nsp3940Q940delCAG---11AY.260.000028
ORF1ab/nsp3940Q940HcaGcaT11AY.270.000065
ORF1ab/nsp3940Q940QcaGcaA11AY.280.00189
ORF1ab/nsp3940Q940RcAgcGg11AY.30.00001
ORF1ab/nsp3940Q940QcaGcaA11AY.300.000396
ORF1ab/nsp3940Q940LcAgcTg11AY.330.000067
ORF1ab/nsp3940Q940HcaGcaT11AY.330.000067
ORF1ab/nsp3940Q940RcAgcGg11AY.340.000097
ORF1ab/nsp3940Q940HcaGcaT11AY.360.000148
ORF1ab/nsp3940Q940QcaGcaA11AY.380.000499
ORF1ab/nsp3940Q940KCagAag11AY.40.000002
ORF1ab/nsp3940Q940QcaGcaA11AY.4.40.000409
ORF1ab/nsp3940Q940QcaGcaA11AY.400.000964
ORF1ab/nsp3940Q940QcaGcaA11AY.410.000294
ORF1ab/nsp3940Q940RcAgcGg11AY.420.00004
ORF1ab/nsp3940Q940delCAG---11AY.430.000004
ORF1ab/nsp3940Q940RcAgcGg11AY.440.000006
ORF1ab/nsp3940Q940XCagTag11AY.440.000006
ORF1ab/nsp3940Q940RcAgcGg11AY.460.000104
ORF1ab/nsp3940Q940RcAgcGg11AY.46.10.001027
ORF1ab/nsp3940Q940RcAgcGg11AY.50.000021
ORF1ab/nsp3940Q940QcaGcaA11AY.510.000909
ORF1ab/nsp3940Q940QcaGcaA11AY.530.000288
ORF1ab/nsp3940Q940RcAgcGg11AY.540.000095
ORF1ab/nsp3940Q940QcaGcaA11AY.540.000095
ORF1ab/nsp3940Q940HcaGcaT11AY.550.000917
ORF1ab/nsp3940Q940QcaGcaA11AY.580.000907
ORF1ab/nsp3940Q940RcAgcGg11AY.60.000041
ORF1ab/nsp3940Q940HcaGcaT11AY.60.000041
ORF1ab/nsp3940Q940QcaGcaA11AY.600.000938
ORF1ab/nsp3940Q940HcaGcaT11AY.620.000436
ORF1ab/nsp3940Q940delCAG---11AY.660.00107
ORF1ab/nsp3940Q940QcaGcaA11AY.680.000274
ORF1ab/nsp3940Q940QcaGcaA11AY.690.000187
ORF1ab/nsp3940Q940QcaGcaA11AY.80.000606
ORF1ab/nsp3940Q940QcaGcaA11AY.9.10.000084
ORF1ab/nsp3940Q940QcaGcaA11AY.900.000684
ORF1ab/nsp3940Q940HcaGcaT11AY.920.000287
ORF1ab/nsp3940Q940HcaGcaT11AY.99.20.000092
ORF1ab/nsp3940Q940QcaGcaA11AY.99.20.000092
ORF1ab/nsp3940Q940RcAgcGg11B0.000128
ORF1ab/nsp3940Q940HcaGcaT11B.10.000009
ORF1ab/nsp3940Q940KCagAag11B.10.000009
ORF1ab/nsp3940Q940ECagGag11B.10.000009
ORF1ab/nsp3940Q940RcAgcGg11B.10.000009
ORF1ab/nsp3940Q940XCagTag11B.1.10.000018
ORF1ab/nsp3940Q940XCagTag11B.1.1.100.001115
ORF1ab/nsp3940Q940delCAG---11B.1.1.1420.017544
ORF1ab/nsp3940Q940QcaGcaA11B.1.1.2040.00304
ORF1ab/nsp3940Q940LcAgcTg11B.1.1.2220.000204
ORF1ab/nsp3940Q940XCagTag11B.1.1.250.000569
ORF1ab/nsp3940Q940QcaGcaA11B.1.1.3050.003861
ORF1ab/nsp3940Q940QcaGcaA11B.1.1.3060.000438
ORF1ab/nsp3940Q940QcaGcaA11B.1.1.3110.000358
ORF1ab/nsp3940Q940QcaGcaA11B.1.1.3730.02381
ORF1ab/nsp3940Q940ECagGag11B.1.1.390.00051
ORF1ab/nsp3940Q940QcaGcaA11B.1.1.3980.003226
ORF1ab/nsp3940Q940RcAgcGg11B.1.1.500.000679
ORF1ab/nsp3940Q940ECagGag11B.1.1.70.000001
ORF1ab/nsp3940Q940HcaGcaT11B.1.1580.02381
ORF1ab/nsp3940Q940delCAG---11B.1.1600.000031
ORF1ab/nsp3940Q940PcAgcCg11B.1.1600.000031
ORF1ab/nsp3940Q940QcaGcaA11B.1.160.280.002924
ORF1ab/nsp3940Q940HcaGcaT11B.1.1770.000013
ORF1ab/nsp3940Q940RcAgcGg11B.1.1770.000013
ORF1ab/nsp3940Q940RcAgcGg11B.1.177.100.000878
ORF1ab/nsp3940Q940QcaGcaA11B.1.177.210.000076
ORF1ab/nsp3940Q940RcAgcGg11B.1.177.320.00135
ORF1ab/nsp3940Q940QcaGcaA11B.1.177.810.000189
ORF1ab/nsp3940Q940QcaGcaA11B.1.177.860.000183
ORF1ab/nsp3940Q940KCagAag11B.1.20.000009
ORF1ab/nsp3940Q940ECagGag11B.1.20.000009
ORF1ab/nsp3940Q940LcAgcTg11B.1.20.000009
ORF1ab/nsp3940Q940delCAG---11B.1.20.000009
ORF1ab/nsp3940Q940QcaGcaA11B.1.2180.005155
ORF1ab/nsp3940Q940HcaGcaT11B.1.2210.000071
ORF1ab/nsp3940Q940KCagAag11B.1.2220.001692
ORF1ab/nsp3940Q940QcaGcaA11B.1.2340.000132
ORF1ab/nsp3940Q940HcaGcaT11B.1.2350.002519
ORF1ab/nsp3940Q940QcaGcaA11B.1.2430.00007
ORF1ab/nsp3940Q940RcAgcGg11B.1.2500.014493
ORF1ab/nsp3940Q940QcaGcaA11B.1.2580.000067
ORF1ab/nsp3940Q940QcaGcaA11B.1.258.170.000104
ORF1ab/nsp3940Q940HcaGcaC11B.1.3110.000275
ORF1ab/nsp3940Q940delCAG---11B.1.3190.003049
ORF1ab/nsp3940Q940QcaGcaA11B.1.3200.001245
ORF1ab/nsp3940Q940XCagTag11B.1.3380.008621
ORF1ab/nsp3940Q940LcAgcTg11B.1.3510.00003
ORF1ab/nsp3940Q940RcAgcGg11B.1.36.360.000602
ORF1ab/nsp3940Q940QcaGcaA11B.1.3670.000792
ORF1ab/nsp3940Q940del1cAgc-g11B.1.3690.000285
ORF1ab/nsp3940Q940RCAGAGA11B.1.4110.003704
ORF1ab/nsp3940Q940XCagTag11B.1.4270.00005
ORF1ab/nsp3940Q940QcaGcaA11B.1.4290.000024
ORF1ab/nsp3940Q940HcaGcaT11B.1.4800.002488
ORF1ab/nsp3940Q940HcaGcaT11B.1.4990.00105
ORF1ab/nsp3940Q940KCagAag11B.1.5960.000087
ORF1ab/nsp3940Q940QcaGcaA11B.1.6090.000479
ORF1ab/nsp3940Q940delCAG---11B.1.617.20.000004
ORF1ab/nsp3940Q940del1Cag-ag11B.1.617.20.000004
ORF1ab/nsp3940Q940KCagAag11B.1.617.20.000004
ORF1ab/nsp3940Q940LcAgcTg11B.1.617.20.000004
ORF1ab/nsp3940Q940HcaGcaT11B.1.6210.000089
ORF1ab/nsp3940Q940LcAgcTg11B.1.6210.000089
ORF1ab/nsp3940Q940QcaGcaA11B.1.6260.005714
ORF1ab/nsp3940Q940QcaGcaA11B.1.6370.000073
ORF1ab/nsp3940Q940delCAG---11B.150.017544
ORF1ab/nsp3940Q940HcaGcaT11B.390.002331
ORF1ab/nsp3940Q940QcaGcaA11B.430.014286
ORF1ab/nsp3940Q940RcAgcGg11D.20.000075
ORF1ab/nsp3940Q940QcaGcaA11D.20.000075
ORF1ab/nsp3940Q940RcAgcGg11P.10.000016
ORF1ab/nsp3940Q940KCagAag11R.10.00009