CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 932

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3932V932AV1750AnonsyngTggCg68606685890.9997525513-5515
ORF1ab/nsp3932V932AV1750AnonsyngTGgCA6860690.0001311845513-5515
ORF1ab/nsp3932V932AV1750AnonsyngTGgCT6860680.0001166085513-5515
ORF1ab/nsp3932V932VV1750VsyngtGgtT399737060.9271955513-5515
ORF1ab/nsp3932V932VV1750VsyngtGgtA39972900.07255445513-5515
ORF1ab/nsp3932V932VV1750VsyngtGgtC399710.0002501885513-5515
ORF1ab/nsp3932V932MV1750MnonsynGtgAtg1117111715513-5515
ORF1ab/nsp3932V932LV1750LnonsynGtgTtg2402070.86255513-5515
ORF1ab/nsp3932V932LV1750LnonsynGtgCtg240310.1291675513-5515
ORF1ab/nsp3932V932LV1750LnonsynGtGTtA24020.008333335513-5515
ORF1ab/nsp3932V932delV1750deldelGTG---272715513-5515
ORF1ab/nsp3932V932GV1750GnonsyngTggGg23220.9565225513-5515
ORF1ab/nsp3932V932GV1750GnonsyngTGgGT2310.04347835513-5515
ORF1ab/nsp3932V932EV1750EnonsyngTggAg131315513-5515
ORF1ab/nsp3932V932TV1750TnonsynGTgACg7715513-5515
ORF1ab/nsp3932V932del1V1750del1delGTgA-g520.45513-5515
ORF1ab/nsp3932V932del1V1750del1delGtg-tg510.25513-5515
ORF1ab/nsp3932V932del1V1750del1delgtGgt-510.25513-5515
ORF1ab/nsp3932V932del1V1750del1delgTgg-g510.25513-5515
ORF1ab/nsp3932V932RV1750RnonsynGTgAGg4415513-5515
ORF1ab/nsp3932V932FV1750FnonsynGtGTtC2215513-5515
ORF1ab/nsp3932V932YV1750YnonsynGTGTAC2215513-5515
ORF1ab/nsp3932V932IV1750InonsynGtGAtT2215513-5515
ORF1ab/nsp3932V932del2V1750del2delGTg--g1115513-5515

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3932V932AgTggCg6858968606All0.013118
ORF1ab/nsp3932V932AgTGgCA968606All0.000002
ORF1ab/nsp3932V932AgTGgCT868606All0.000002
ORF1ab/nsp3932V932AgTggCg6333963353AY.290.999085
ORF1ab/nsp3932V932AgTGgCA763353AY.290.00011
ORF1ab/nsp3932V932AgTGgCT763353AY.290.00011
ORF1ab/nsp3932V932AgTggCg45284530AY.29.10.998456
ORF1ab/nsp3932V932AgTGgCA24530AY.29.10.000441
ORF1ab/nsp3932V932VgtGgtT37063997All0.000709
ORF1ab/nsp3932V932VgtGgtA2903997All0.000055
ORF1ab/nsp3932V932VgtGgtC13997All0
ORF1ab/nsp3932V932VgtGgtT18231895B.1.1.70.001632
ORF1ab/nsp3932V932VgtGgtA721895B.1.1.70.000064
ORF1ab/nsp3932V932MGtgAtg11171117All0.000214
ORF1ab/nsp3932V932VgtGgtT985994AY.40.001533
ORF1ab/nsp3932V932VgtGgtA9994AY.40.000014
ORF1ab/nsp3932V932MGtgAtg542542AY.40.000844
ORF1ab/nsp3932V932VgtGgtT391391AY.30.003889
ORF1ab/nsp3932V932MGtgAtg254254B.1.1.70.000227
ORF1ab/nsp3932V932LGtgTtg207240All0.00004
ORF1ab/nsp3932V932LGtgCtg31240All0.000006
ORF1ab/nsp3932V932LGtGTtA2240All0
ORF1ab/nsp3932V932AgTggCg128128B.1.617.20.000482
ORF1ab/nsp3932V932AgTggCg127127AY.740.014687
ORF1ab/nsp3932V932VgtGgtT7599B.1.617.20.000282
ORF1ab/nsp3932V932VgtGgtA2399B.1.617.20.000087
ORF1ab/nsp3932V932VgtGgtC199B.1.617.20.000004
ORF1ab/nsp3932V932VgtGgtA9999C.36.3.10.269022
ORF1ab/nsp3932V932AgTggCg7575AY.930.020481
ORF1ab/nsp3932V932MGtgAtg6969B.1.617.20.00026
ORF1ab/nsp3932V932VgtGgtT6464AY.470.001991
ORF1ab/nsp3932V932MGtgAtg6262B.1.1.2740.313131
ORF1ab/nsp3932V932AgTggCg5454AY.40.000084
ORF1ab/nsp3932V932LGtgCtg2743B.1.1.70.000024
ORF1ab/nsp3932V932LGtgTtg1543B.1.1.70.000013
ORF1ab/nsp3932V932LGtGTtA143B.1.1.70.000001
ORF1ab/nsp3932V932VgtGgtT4141AY.1200.001524
ORF1ab/nsp3932V932LGtgTtg4040B.1.1770.000527
ORF1ab/nsp3932V932AgTggCg3535AY.1170.002958
ORF1ab/nsp3932V932VgtGgtT3335AY.440.000201
ORF1ab/nsp3932V932VgtGgtA235AY.440.000012
ORF1ab/nsp3932V932AgTggCg3333AY.1020.000875
ORF1ab/nsp3932V932VgtGgtT2731AY.430.00012
ORF1ab/nsp3932V932VgtGgtA431AY.430.000018
ORF1ab/nsp3932V932VgtGgtT2329B.1.20.000203
ORF1ab/nsp3932V932VgtGgtA629B.1.20.000053
ORF1ab/nsp3932V932AgTggCg2828AY.360.00415
ORF1ab/nsp3932V932delGTG---2727All0.000005
ORF1ab/nsp3932V932VgtGgtT1726AY.250.000102
ORF1ab/nsp3932V932VgtGgtA926AY.250.000054
ORF1ab/nsp3932V932LGtgTtg2424AY.1030.000149
ORF1ab/nsp3932V932AgTggCg2424AY.460.002498
ORF1ab/nsp3932V932LGtgTtg2424B.1.20.000211
ORF1ab/nsp3932V932GgTggGg2223All0.000004
ORF1ab/nsp3932V932GgTGgGT123All0
ORF1ab/nsp3932V932LGtgTtg2323AY.40.000036
ORF1ab/nsp3932V932VgtGgtT1721B.10.000156
ORF1ab/nsp3932V932VgtGgtA421B.10.000037
ORF1ab/nsp3932V932MGtgAtg2020AY.1030.000124
ORF1ab/nsp3932V932MGtgAtg2020B.1.4290.000471
ORF1ab/nsp3932V932AgTggCg1616AY.420.000644
ORF1ab/nsp3932V932AgTggCg1616AY.790.01937
ORF1ab/nsp3932V932AgTggCg1515AY.1110.002747
ORF1ab/nsp3932V932VgtGgtT1515AY.480.006977
ORF1ab/nsp3932V932VgtGgtA1414AY.90.000946
ORF1ab/nsp3932V932EgTggAg1313All0.000002
ORF1ab/nsp3932V932MGtgAtg1313B.1.1600.000405
ORF1ab/nsp3932V932MGtgAtg1212AY.30.000119
ORF1ab/nsp3932V932MGtgAtg1212AY.430.000053
ORF1ab/nsp3932V932VgtGgtT1212B.1.3960.008469
ORF1ab/nsp3932V932VgtGgtT611AY.1190.000212
ORF1ab/nsp3932V932VgtGgtA511AY.1190.000177
ORF1ab/nsp3932V932VgtGgtT910P.10.000142
ORF1ab/nsp3932V932VgtGgtA110P.10.000016
ORF1ab/nsp3932V932VgtGgtT99AY.260.000255
ORF1ab/nsp3932V932AgTggCg99AY.390.000222
ORF1ab/nsp3932V932AgTggCg99AY.50.000186
ORF1ab/nsp3932V932MGtgAtg99B.10.000082
ORF1ab/nsp3932V932LGtgTtg89B.10.000073
ORF1ab/nsp3932V932LGtgCtg19B.10.000009
ORF1ab/nsp3932V932MGtgAtg99B.1.10.000163
ORF1ab/nsp3932V932LGtgTtg99B.1.617.20.000034
ORF1ab/nsp3932V932VgtGgtT68AY.1030.000037
ORF1ab/nsp3932V932VgtGgtA28AY.1030.000012
ORF1ab/nsp3932V932TGTgACg77All0.000001
ORF1ab/nsp3932V932AgTggCg77AY.1180.000439
ORF1ab/nsp3932V932AgTggCg77AY.340.000679
ORF1ab/nsp3932V932VgtGgtT67AY.390.000148
ORF1ab/nsp3932V932VgtGgtA17AY.390.000025
ORF1ab/nsp3932V932AgTggCg77AY.39.10.000277
ORF1ab/nsp3932V932GgTggGg77AY.40.000011
ORF1ab/nsp3932V932VgtGgtT77AY.4.20.000152
ORF1ab/nsp3932V932GgTggGg77AY.4.50.000752
ORF1ab/nsp3932V932AgTggCg77AY.410.002058
ORF1ab/nsp3932V932AgTggCg77AY.430.000031
ORF1ab/nsp3932V932AgTggCg77AY.880.006189
ORF1ab/nsp3932V932VgtGgtT77B.1.10.000127
ORF1ab/nsp3932V932VgtGgtT77B.1.1.2160.006233
ORF1ab/nsp3932V932AgTggCg77B.1.1.70.000006
ORF1ab/nsp3932V932delGTG---77B.1.1.70.000006
ORF1ab/nsp3932V932VgtGgtT77B.1.2140.025641
ORF1ab/nsp3932V932LGtgTtg67D.20.00045
ORF1ab/nsp3932V932LGtgCtg17D.20.000075
ORF1ab/nsp3932V932VgtGgtT66AY.330.000401
ORF1ab/nsp3932V932MGtgAtg66AY.440.000037
ORF1ab/nsp3932V932AgTggCg66AY.9.20.00022
ORF1ab/nsp3932V932AgTggCg66P.10.000095
ORF1ab/nsp3932V932del1GTgA-g25All0
ORF1ab/nsp3932V932del1gTgg-g15All0
ORF1ab/nsp3932V932del1Gtg-tg15All0
ORF1ab/nsp3932V932del1gtGgt-15All0
ORF1ab/nsp3932V932AgTggCg45AY.1030.000025
ORF1ab/nsp3932V932AgTGgCT15AY.1030.000006
ORF1ab/nsp3932V932VgtGgtT55AY.1180.000313
ORF1ab/nsp3932V932MGtgAtg55AY.230.000349
ORF1ab/nsp3932V932TGTgACg55AY.290.000079
ORF1ab/nsp3932V932MGtgAtg55AY.98.10.000242
ORF1ab/nsp3932V932VgtGgtT35B.1.1770.00004
ORF1ab/nsp3932V932VgtGgtA25B.1.1770.000026
ORF1ab/nsp3932V932AgTggCg55B.1.5510.006452
ORF1ab/nsp3932V932VgtGgtT55B.1.6210.000443
ORF1ab/nsp3932V932RGTgAGg440.222222
ORF1ab/nsp3932V932RGTgAGg44All0.000001
ORF1ab/nsp3932V932MGtgAtg44AY.1110.000733
ORF1ab/nsp3932V932MGtgAtg44AY.39.1.10.002899
ORF1ab/nsp3932V932VgtGgtT44AY.420.000161
ORF1ab/nsp3932V932VgtGgtT44AY.930.001092
ORF1ab/nsp3932V932VgtGgtT44B0.000511
ORF1ab/nsp3932V932GgTggGg34B.10.000027
ORF1ab/nsp3932V932GgTGgGT14B.10.000009
ORF1ab/nsp3932V932LGtgTtg44B.1.1.2940.005063
ORF1ab/nsp3932V932VgtGgtT34B.1.1600.000094
ORF1ab/nsp3932V932VgtGgtA14B.1.1600.000031
ORF1ab/nsp3932V932MGtgAtg44B.1.160.260.009685
ORF1ab/nsp3932V932MGtgAtg44B.1.3510.000119
ORF1ab/nsp3932V932VgtGgtA34B.1.3510.000089
ORF1ab/nsp3932V932VgtGgtT14B.1.3510.00003
ORF1ab/nsp3932V932LGtgTtg44B.1.36.220.004831
ORF1ab/nsp3932V932MGtgAtg44Q.80.00066
ORF1ab/nsp3932V932AgTggCg33AD.20.000657
ORF1ab/nsp3932V932VgtGgtT23AY.1000.000092
ORF1ab/nsp3932V932VgtGgtA13AY.1000.000046
ORF1ab/nsp3932V932MGtgAtg33AY.1020.00008
ORF1ab/nsp3932V932LGtgTtg33AY.1020.00008
ORF1ab/nsp3932V932AgTggCg33AY.1050.001929
ORF1ab/nsp3932V932VgtGgtT33AY.1130.000427
ORF1ab/nsp3932V932AgTggCg33AY.1130.000427
ORF1ab/nsp3932V932VgtGgtT33AY.1170.000254
ORF1ab/nsp3932V932VgtGgtT33AY.120.000948
ORF1ab/nsp3932V932AgTggCg33AY.190.003421
ORF1ab/nsp3932V932VgtGgtA23AY.200.000078
ORF1ab/nsp3932V932VgtGgtT13AY.200.000039
ORF1ab/nsp3932V932MGtgAtg33AY.390.000074
ORF1ab/nsp3932V932delGTG---33AY.40.000005
ORF1ab/nsp3932V932VgtGgtT23AY.4.50.000215
ORF1ab/nsp3932V932VgtGgtA13AY.4.50.000107
ORF1ab/nsp3932V932AgTggCg33AY.400.002893
ORF1ab/nsp3932V932LGtgTtg33AY.440.000018
ORF1ab/nsp3932V932AgTggCg33AY.480.001395
ORF1ab/nsp3932V932VgtGgtT33AY.50.000062
ORF1ab/nsp3932V932AgTggCg33AY.5.30.001012
ORF1ab/nsp3932V932MGtgAtg33AY.610.000314
ORF1ab/nsp3932V932AgTggCg33AY.680.000821
ORF1ab/nsp3932V932VgtGgtT33AY.910.002191
ORF1ab/nsp3932V932AgTggCg33B.10.000027
ORF1ab/nsp3932V932VgtGgtT23B.1.1.10.000653
ORF1ab/nsp3932V932VgtGgtA13B.1.1.10.000327
ORF1ab/nsp3932V932VgtGgtT33B.1.1.3050.011583
ORF1ab/nsp3932V932MGtgAtg33B.1.1.390.001529
ORF1ab/nsp3932V932VgtGgtA23B.1.1.5190.000079
ORF1ab/nsp3932V932VgtGgtT13B.1.1.5190.00004
ORF1ab/nsp3932V932MGtgAtg33B.1.2210.000213
ORF1ab/nsp3932V932AgTggCg33B.1.2430.000209
ORF1ab/nsp3932V932MGtgAtg33B.1.5260.000071
ORF1ab/nsp3932V932VgtGgtT33C.36.30.001702
ORF1ab/nsp3932V932VgtGgtT33C.370.000348
ORF1ab/nsp3932V932YGTGTAC220.111111
ORF1ab/nsp3932V932VgtGgtA220.111111
ORF1ab/nsp3932V932LGtgTtg22A.23.10.001408
ORF1ab/nsp3932V932IGtGAtT22All0
ORF1ab/nsp3932V932YGTGTAC22All0
ORF1ab/nsp3932V932FGtGTtC22All0
ORF1ab/nsp3932V932AgTggCg22AY.1000.000092
ORF1ab/nsp3932V932VgtGgtT22AY.1020.000053
ORF1ab/nsp3932V932AgTggCg22AY.1040.003968
ORF1ab/nsp3932V932AgTggCg22AY.1060.00067
ORF1ab/nsp3932V932AgTggCg22AY.1100.000225
ORF1ab/nsp3932V932AgTggCg22AY.120.000632
ORF1ab/nsp3932V932AgTggCg22AY.1200.000074
ORF1ab/nsp3932V932LGtgTtg22AY.1210.000271
ORF1ab/nsp3932V932VgtGgtT22AY.16.10.00094
ORF1ab/nsp3932V932MGtgAtg22AY.250.000012
ORF1ab/nsp3932V932AgTggCg22AY.250.000012
ORF1ab/nsp3932V932AgTggCg22AY.30.00002
ORF1ab/nsp3932V932LGtgTtg22AY.30.00002
ORF1ab/nsp3932V932MGtgAtg22AY.360.000296
ORF1ab/nsp3932V932VgtGgtT22AY.39.10.000079
ORF1ab/nsp3932V932VgtGgtT22AY.46.60.000144
ORF1ab/nsp3932V932AgTggCg22AY.540.000191
ORF1ab/nsp3932V932VgtGgtT12AY.550.000917
ORF1ab/nsp3932V932VgtGgtA12AY.550.000917
ORF1ab/nsp3932V932AgTggCg22AY.580.001815
ORF1ab/nsp3932V932AgTggCg22AY.590.001059
ORF1ab/nsp3932V932AgTggCg22AY.60.000082
ORF1ab/nsp3932V932VgtGgtT12AY.610.000105
ORF1ab/nsp3932V932VgtGgtA12AY.610.000105
ORF1ab/nsp3932V932AgTggCg22AY.630.000774
ORF1ab/nsp3932V932AgTggCg22AY.640.00119
ORF1ab/nsp3932V932AgTggCg22AY.690.000373
ORF1ab/nsp3932V932VgtGgtT22AY.70.000392
ORF1ab/nsp3932V932AgTggCg22AY.70.000392
ORF1ab/nsp3932V932VgtGgtA22AY.750.000112
ORF1ab/nsp3932V932AgTggCg22AY.780.003082
ORF1ab/nsp3932V932AgTggCg22AY.840.000875
ORF1ab/nsp3932V932AgTggCg22AY.860.00166
ORF1ab/nsp3932V932AgTggCg22AY.950.001522
ORF1ab/nsp3932V932VgtGgtT22AY.99.20.000184
ORF1ab/nsp3932V932del1GTgA-g22B.1.10.000036
ORF1ab/nsp3932V932LGtgTtg12B.1.10.000018
ORF1ab/nsp3932V932LGtgCtg12B.1.10.000018
ORF1ab/nsp3932V932VgtGgtT22B.1.1.3060.000877
ORF1ab/nsp3932V932LGtgTtg22B.1.1.3060.000877
ORF1ab/nsp3932V932VgtGgtA22B.1.1.540.006042
ORF1ab/nsp3932V932EgTggAg22B.1.1.70.000002
ORF1ab/nsp3932V932MGtgAtg22B.1.20.000018
ORF1ab/nsp3932V932VgtGgtA22B.1.2060.001631
ORF1ab/nsp3932V932VgtGgtT22B.1.2340.000264
ORF1ab/nsp3932V932MGtgAtg22B.1.258.170.000208
ORF1ab/nsp3932V932delGTG---22B.1.360.000292
ORF1ab/nsp3932V932VgtGgtA12B.1.4290.000024
ORF1ab/nsp3932V932VgtGgtT12B.1.4290.000024
ORF1ab/nsp3932V932VgtGgtT22B.1.5260.000047
ORF1ab/nsp3932V932EgTggAg22B.1.617.20.000008
ORF1ab/nsp3932V932delGTG---22B.1.617.20.000008
ORF1ab/nsp3932V932EgTggAg22C.370.000232
ORF1ab/nsp3932V932VgtGgtT22N.50.003534
ORF1ab/nsp3932V932LGtgTtg22P.10.000032
ORF1ab/nsp3932V932VgtGgtA22Q.10.000253
ORF1ab/nsp3932V932TGTgACg11A0.000387
ORF1ab/nsp3932V932GgTggGg11A.20.000662
ORF1ab/nsp3932V932delGTG---11A.2.20.001689
ORF1ab/nsp3932V932VgtGgtT11A.2.40.003367
ORF1ab/nsp3932V932VgtGgtT11A.250.018182
ORF1ab/nsp3932V932VgtGgtA11A.50.001923
ORF1ab/nsp3932V932MGtgAtg11AD.20.000219
ORF1ab/nsp3932V932VgtGgtT11AE.80.000489
ORF1ab/nsp3932V932del2GTg--g11All0
ORF1ab/nsp3932V932MGtgAtg11AY.1000.000046
ORF1ab/nsp3932V932VgtGgtT11AY.1050.000643
ORF1ab/nsp3932V932AgTggCg11AY.1080.001103
ORF1ab/nsp3932V932delGTG---11AY.1080.001103
ORF1ab/nsp3932V932VgtGgtA11AY.1090.00074
ORF1ab/nsp3932V932VgtGgtA11AY.1100.000113
ORF1ab/nsp3932V932MGtgAtg11AY.116.10.000311
ORF1ab/nsp3932V932MGtgAtg11AY.1170.000085
ORF1ab/nsp3932V932LGtgTtg11AY.1180.000063
ORF1ab/nsp3932V932LGtgTtg11AY.1190.000035
ORF1ab/nsp3932V932LGtgTtg11AY.120.000316
ORF1ab/nsp3932V932LGtgTtg11AY.1200.000037
ORF1ab/nsp3932V932IGtGAtT11AY.1200.000037
ORF1ab/nsp3932V932delGTG---11AY.120.10.000321
ORF1ab/nsp3932V932VgtGgtA11AY.160.00038
ORF1ab/nsp3932V932GgTggGg11AY.170.008197
ORF1ab/nsp3932V932LGtgTtg11AY.200.000039
ORF1ab/nsp3932V932MGtgAtg11AY.200.000039
ORF1ab/nsp3932V932VgtGgtT11AY.230.00007
ORF1ab/nsp3932V932AgTggCg11AY.230.00007
ORF1ab/nsp3932V932LGtgTtg11AY.240.000431
ORF1ab/nsp3932V932EgTggAg11AY.250.000006
ORF1ab/nsp3932V932delGTG---11AY.260.000028
ORF1ab/nsp3932V932MGtgAtg11AY.270.000065
ORF1ab/nsp3932V932VgtGgtT11AY.270.000065
ORF1ab/nsp3932V932VgtGgtA11AY.280.00189
ORF1ab/nsp3932V932delGTG---11AY.30.00001
ORF1ab/nsp3932V932MGtgAtg11AY.3.10.000085
ORF1ab/nsp3932V932VgtGgtT11AY.300.000396
ORF1ab/nsp3932V932EgTggAg11AY.330.000067
ORF1ab/nsp3932V932EgTggAg11AY.340.000097
ORF1ab/nsp3932V932VgtGgtA11AY.340.000097
ORF1ab/nsp3932V932AgTggCg11AY.370.000316
ORF1ab/nsp3932V932LGtgTtg11AY.390.000025
ORF1ab/nsp3932V932LGtgTtg11AY.4.20.000022
ORF1ab/nsp3932V932MGtgAtg11AY.4.2.10.000149
ORF1ab/nsp3932V932MGtgAtg11AY.420.00004
ORF1ab/nsp3932V932LGtgTtg11AY.430.000004
ORF1ab/nsp3932V932EgTggAg11AY.430.000004
ORF1ab/nsp3932V932TGTgACg11AY.440.000006
ORF1ab/nsp3932V932VgtGgtA11AY.450.000122
ORF1ab/nsp3932V932LGtgTtg11AY.450.000122
ORF1ab/nsp3932V932AgTggCg11AY.450.000122
ORF1ab/nsp3932V932MGtgAtg11AY.450.000122
ORF1ab/nsp3932V932EgTggAg11AY.460.000104
ORF1ab/nsp3932V932VgtGgtT11AY.460.000104
ORF1ab/nsp3932V932MGtgAtg11AY.470.000031
ORF1ab/nsp3932V932MGtgAtg11AY.50.000021
ORF1ab/nsp3932V932LGtgTtg11AY.50.000021
ORF1ab/nsp3932V932LGtgTtg11AY.5.30.000337
ORF1ab/nsp3932V932MGtgAtg11AY.500.000799
ORF1ab/nsp3932V932MGtgAtg11AY.510.000909
ORF1ab/nsp3932V932GgTggGg11AY.580.000907
ORF1ab/nsp3932V932LGtgTtg11AY.590.00053
ORF1ab/nsp3932V932VgtGgtT11AY.60.000041
ORF1ab/nsp3932V932LGtgTtg11AY.60.000041
ORF1ab/nsp3932V932AgTggCg11AY.600.000938
ORF1ab/nsp3932V932LGtgTtg11AY.610.000105
ORF1ab/nsp3932V932MGtgAtg11AY.640.000595
ORF1ab/nsp3932V932delGTG---11AY.660.00107
ORF1ab/nsp3932V932delGTG---11AY.670.000464
ORF1ab/nsp3932V932MGtgAtg11AY.70.000196
ORF1ab/nsp3932V932delGTG---11AY.700.000209
ORF1ab/nsp3932V932AgTggCg11AY.730.000665
ORF1ab/nsp3932V932MGtgAtg11AY.750.000056
ORF1ab/nsp3932V932MGtgAtg11AY.75.10.00018
ORF1ab/nsp3932V932MGtgAtg11AY.770.001127
ORF1ab/nsp3932V932del1gTgg-g11AY.790.001211
ORF1ab/nsp3932V932GgTggGg11AY.80.000606
ORF1ab/nsp3932V932MGtgAtg11AY.840.000437
ORF1ab/nsp3932V932VgtGgtT11AY.9.10.000084
ORF1ab/nsp3932V932VgtGgtT11AY.9.20.000037
ORF1ab/nsp3932V932VgtGgtT11AY.920.000287
ORF1ab/nsp3932V932VgtGgtA11AY.970.001701
ORF1ab/nsp3932V932LGtgTtg11AY.980.000079
ORF1ab/nsp3932V932VgtGgtT11AY.98.10.000048
ORF1ab/nsp3932V932EgTggAg11AY.98.10.000048
ORF1ab/nsp3932V932del2GTg--g11AY.99.10.001553
ORF1ab/nsp3932V932LGtgTtg11B0.000128
ORF1ab/nsp3932V932FGtGTtC11B.1.10.000018
ORF1ab/nsp3932V932delGTG---11B.1.1.1420.017544
ORF1ab/nsp3932V932MGtgAtg11B.1.1.2160.00089
ORF1ab/nsp3932V932MGtgAtg11B.1.1.2200.001859
ORF1ab/nsp3932V932VgtGgtT11B.1.1.2220.000204
ORF1ab/nsp3932V932VgtGgtT11B.1.1.2790.001121
ORF1ab/nsp3932V932LGtGTtA11B.1.1.3000.010753
ORF1ab/nsp3932V932LGtgTtg11B.1.1.3050.003861
ORF1ab/nsp3932V932VgtGgtA11B.1.1.3170.000412
ORF1ab/nsp3932V932MGtgAtg11B.1.1.3240.052632
ORF1ab/nsp3932V932VgtGgtT11B.1.1.330.000421
ORF1ab/nsp3932V932VgtGgtT11B.1.1.3440.010753
ORF1ab/nsp3932V932MGtgAtg11B.1.1.3540.004386
ORF1ab/nsp3932V932LGtgTtg11B.1.1.3740.002375
ORF1ab/nsp3932V932LGtgTtg11B.1.1.390.00051
ORF1ab/nsp3932V932LGtgTtg11B.1.1.4160.000905
ORF1ab/nsp3932V932LGtgTtg11B.1.1.5260.003546
ORF1ab/nsp3932V932FGtGTtC11B.1.1.70.000001
ORF1ab/nsp3932V932LGtgTtg11B.1.1.700.000341
ORF1ab/nsp3932V932delGTG---11B.1.1600.000031
ORF1ab/nsp3932V932LGtgTtg11B.1.177.110.001698
ORF1ab/nsp3932V932LGtgTtg11B.1.177.200.001517
ORF1ab/nsp3932V932LGtgTtg11B.1.177.70.000165
ORF1ab/nsp3932V932VgtGgtT11B.1.177.730.000566
ORF1ab/nsp3932V932AgTggCg11B.1.20.000009
ORF1ab/nsp3932V932delGTG---11B.1.20.000009
ORF1ab/nsp3932V932LGtgTtg11B.1.2220.001692
ORF1ab/nsp3932V932VgtGgtA11B.1.2430.00007
ORF1ab/nsp3932V932IGtGAtT11B.1.2580.000067
ORF1ab/nsp3932V932VgtGgtT11B.1.258.170.000104
ORF1ab/nsp3932V932LGtgTtg11B.1.2890.00266
ORF1ab/nsp3932V932delGTG---11B.1.3190.003049
ORF1ab/nsp3932V932AgTggCg11B.1.3510.00003
ORF1ab/nsp3932V932VgtGgtT11B.1.351.50.0006
ORF1ab/nsp3932V932MGtgAtg11B.1.3560.001727
ORF1ab/nsp3932V932AgTggCg11B.1.360.000146
ORF1ab/nsp3932V932VgtGgtT11B.1.36.80.001
ORF1ab/nsp3932V932MGtgAtg11B.1.3890.001002
ORF1ab/nsp3932V932VgtGgtA11B.1.4090.000781
ORF1ab/nsp3932V932VgtGgtA11B.1.416.10.001563
ORF1ab/nsp3932V932VgtGgtT11B.1.4270.00005
ORF1ab/nsp3932V932MGtgAtg11B.1.4530.003236
ORF1ab/nsp3932V932LGtgTtg11B.1.4560.003268
ORF1ab/nsp3932V932AgTggCg11B.1.466.20.000391
ORF1ab/nsp3932V932VgtGgtT11B.1.4800.002488
ORF1ab/nsp3932V932VgtGgtA11B.1.5250.000113
ORF1ab/nsp3932V932del1Gtg-tg11B.1.5260.000024
ORF1ab/nsp3932V932VgtGgtT11B.1.5370.02
ORF1ab/nsp3932V932LGtgTtg11B.1.5400.009709
ORF1ab/nsp3932V932AgTggCg11B.1.5490.007194
ORF1ab/nsp3932V932VgtGgtT11B.1.5720.025
ORF1ab/nsp3932V932LGtgTtg11B.1.5950.000261
ORF1ab/nsp3932V932LGtgTtg11B.1.5960.000087
ORF1ab/nsp3932V932MGtgAtg11B.1.6090.000479
ORF1ab/nsp3932V932GgTggGg11B.1.617.20.000004
ORF1ab/nsp3932V932del1gtGgt-11B.1.617.20.000004
ORF1ab/nsp3932V932LGtgTtg11B.1.80.001972
ORF1ab/nsp3932V932delGTG---11B.150.017544
ORF1ab/nsp3932V932VgtGgtT11B.400.000364
ORF1ab/nsp3932V932AgTggCg11B.6.60.000889
ORF1ab/nsp3932V932MGtgAtg11C.1.20.004255
ORF1ab/nsp3932V932MGtgAtg11C.370.000116
ORF1ab/nsp3932V932AgTggCg11D.20.000075
ORF1ab/nsp3932V932VgtGgtT11D.20.000075
ORF1ab/nsp3932V932EgTggAg11P.10.000016
ORF1ab/nsp3932V932MGtgAtg11P.10.000016
ORF1ab/nsp3932V932VgtGgtT11P.1.170.000162
ORF1ab/nsp3932V932MGtgAtg11P.60.003145
ORF1ab/nsp3932V932MGtgAtg11Q.10.000126
ORF1ab/nsp3932V932VgtGgtT11Q.30.000145
ORF1ab/nsp3932V932LGtgCtg11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.