CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 931

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp3	931	N931N	N1749N	syn	aaC	aaT	23555	23555	1	5510-5512
ORF1ab/nsp3	931	N931S	N1749S	nonsyn	aAc	aGc	311	308	0.990354	5510-5512
ORF1ab/nsp3	931	N931S	N1749S	nonsyn	aAC	aGT	311	3	0.0096463	5510-5512
ORF1ab/nsp3	931	N931K	N1749K	nonsyn	aaC	aaA	66	63	0.954545	5510-5512
ORF1ab/nsp3	931	N931K	N1749K	nonsyn	aaC	aaG	66	3	0.0454545	5510-5512
ORF1ab/nsp3	931	N931D	N1749D	nonsyn	Aac	Gac	46	46	1	5510-5512
ORF1ab/nsp3	931	N931del	N1749del	del	AAC	---	26	26	1	5510-5512
ORF1ab/nsp3	931	N931T	N1749T	nonsyn	aAc	aCc	20	20	1	5510-5512
ORF1ab/nsp3	931	N931Y	N1749Y	nonsyn	Aac	Tac	8	8	1	5510-5512
ORF1ab/nsp3	931	N931H	N1749H	nonsyn	Aac	Cac	5	5	1	5510-5512
ORF1ab/nsp3	931	N931del1	N1749del1	del	aaC	aa-	5	2	0.4	5510-5512
ORF1ab/nsp3	931	N931del1	N1749del1	del	Aac	-ac	5	1	0.2	5510-5512
ORF1ab/nsp3	931	N931del1	N1749del1	del	AaC	-aT	5	1	0.2	5510-5512
ORF1ab/nsp3	931	N931del1	N1749del1	del	AaC	Ga-	5	1	0.2	5510-5512
ORF1ab/nsp3	931	N931I	N1749I	nonsyn	aAc	aTc	4	3	0.75	5510-5512
ORF1ab/nsp3	931	N931L	N1749L	nonsyn	AAC	TTA	4	2	0.5	5510-5512
ORF1ab/nsp3	931	N931L	N1749L	nonsyn	AAC	CTA	4	2	0.5	5510-5512
ORF1ab/nsp3	931	N931I	N1749I	nonsyn	aAC	aTT	4	1	0.25	5510-5512
ORF1ab/nsp3	931	N931P	N1749P	nonsyn	AAc	CCc	1	1	1	5510-5512
ORF1ab/nsp3	931	N931G	N1749G	nonsyn	AAC	GGA	1	1	1	5510-5512

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp3	931	N931N	aaC	aaT	23555	23555	All	0.004505
ORF1ab/nsp3	931	N931N	aaC	aaT	4293	4293	B.1.1.7	0.003843
ORF1ab/nsp3	931	N931N	aaC	aaT	3158	3158	AY.4	0.004915
ORF1ab/nsp3	931	N931N	aaC	aaT	2403	2403	B.1.617.2	0.009048
ORF1ab/nsp3	931	N931N	aaC	aaT	2194	2194	AY.20	0.08527
ORF1ab/nsp3	931	N931N	aaC	aaT	1112	1112	B.1.2	0.009792
ORF1ab/nsp3	931	N931N	aaC	aaT	865	865	AY.102	0.022935
ORF1ab/nsp3	931	N931N	aaC	aaT	727	727	AY.99.2	0.066998
ORF1ab/nsp3	931	N931N	aaC	aaT	692	692	B.1.351	0.020571
ORF1ab/nsp3	931	N931N	aaC	aaT	555	555	AY.60	0.520638
ORF1ab/nsp3	931	N931N	aaC	aaT	441	441	AY.3	0.004386
ORF1ab/nsp3	931	N931N	aaC	aaT	387	387	B.1.595	0.100992
ORF1ab/nsp3	931	N931N	aaC	aaT	376	376	AY.44	0.002289
ORF1ab/nsp3	931	N931N	aaC	aaT	349	349	AY.29	0.005505
ORF1ab/nsp3	931	N931N	aaC	aaT	332	332	B.1	0.003041
ORF1ab/nsp3	931	N931N	aaC	aaT	332	332	B.1.22	0.437418
ORF1ab/nsp3	931	N931N	aaC	aaT	329	329	AY.43	0.001458
ORF1ab/nsp3	931	N931N	aaC	aaT	312	312	AY.103	0.001937
ORF1ab/nsp3	931	N931S	aAc	aGc	308	311	All	0.000059
ORF1ab/nsp3	931	N931S	aAC	aGT	3	311	All	0.000001
ORF1ab/nsp3	931	N931N	aaC	aaT	290	290	AY.39	0.007166
ORF1ab/nsp3	931	N931N	aaC	aaT	290	290	P.1	0.004569
ORF1ab/nsp3	931	N931N	aaC	aaT	280	280	B.1.177	0.003687
ORF1ab/nsp3	931	N931N	aaC	aaT	159	159	B.1.1	0.002884
ORF1ab/nsp3	931	N931N	aaC	aaT	133	133	AY.25	0.0008
ORF1ab/nsp3	931	N931N	aaC	aaT	125	125	B.1.429	0.002941
ORF1ab/nsp3	931	N931N	aaC	aaT	116	116	AY.118	0.007267
ORF1ab/nsp3	931	N931N	aaC	aaT	107	107	AY.9	0.007233
ORF1ab/nsp3	931	N931N	aaC	aaT	86	86	B.1.160	0.002682
ORF1ab/nsp3	931	N931N	aaC	aaT	82	82	AY.120	0.003049
ORF1ab/nsp3	931	N931N	aaC	aaT	79	79	B.1.1.214	0.004381
ORF1ab/nsp3	931	N931N	aaC	aaT	75	75	AY.7	0.0147
ORF1ab/nsp3	931	N931N	aaC	aaT	73	73	AY.26	0.002067
ORF1ab/nsp3	931	N931S	aAc	aGc	72	72	AY.3	0.000716
ORF1ab/nsp3	931	N931S	aAc	aGc	71	71	AY.5	0.001466
ORF1ab/nsp3	931	N931N	aaC	aaT	69	69	AY.111	0.012637
ORF1ab/nsp3	931	N931S	aAc	aGc	69	69	B.1.2	0.000608
ORF1ab/nsp3	931	N931N	aaC	aaT	69	69	B.1.526	0.001622
ORF1ab/nsp3	931	N931K	aaC	aaA	63	66	All	0.000012
ORF1ab/nsp3	931	N931K	aaC	aaG	3	66	All	0.000001
ORF1ab/nsp3	931	N931N	aaC	aaT	65	65	B.1.177.7	0.010715
ORF1ab/nsp3	931	N931N	aaC	aaT	65	65	B.1.221	0.004617
ORF1ab/nsp3	931	N931N	aaC	aaT	61	61	AY.5	0.00126
ORF1ab/nsp3	931	N931N	aaC	aaT	57	57	B.1.177.54	0.034566
ORF1ab/nsp3	931	N931N	aaC	aaT	53	53	B.1.426	0.053481
ORF1ab/nsp3	931	N931N	aaC	aaT	52	52	B.1.1.1	0.016988
ORF1ab/nsp3	931	N931N	aaC	aaT	48	48	B.1.126	0.061224
ORF1ab/nsp3	931	N931N	aaC	aaT	48	48	P.1.14	0.002294
ORF1ab/nsp3	931	N931D	Aac	Gac	46	46	All	0.000009
ORF1ab/nsp3	931	N931N	aaC	aaT	46	46	AY.47	0.001431
ORF1ab/nsp3	931	N931N	aaC	aaT	46	46	B.1.177.75	0.047867
ORF1ab/nsp3	931	N931N	aaC	aaT	46	46	R.1	0.00414
ORF1ab/nsp3	931	N931N	aaC	aaT	35	35	B.1.1.176	0.015378
ORF1ab/nsp3	931	N931N	aaC	aaT	34	34	AY.23	0.002371
ORF1ab/nsp3	931	N931N	aaC	aaT	33	33	AY.46	0.003435
ORF1ab/nsp3	931	N931N	aaC	aaT	33	33	AY.46.2	0.020966
ORF1ab/nsp3	931	N931N	aaC	aaT	32	32	AY.74	0.003701
ORF1ab/nsp3	931	N931N	aaC	aaT	32	32	B.1.1.519	0.001271
ORF1ab/nsp3	931	N931N	aaC	aaT	32	32	B.1.22.1	1
ORF1ab/nsp3	931	N931K	aaC	aaA	31	31	AY.103	0.000192
ORF1ab/nsp3	931	N931N	aaC	aaT	30	30	C.37	0.003482
ORF1ab/nsp3	931	N931N	aaC	aaT	30	30	P.4	0.114068
ORF1ab/nsp3	931	N931N	aaC	aaT	29	29	C.36.3	0.016449
ORF1ab/nsp3	931	N931N	aaC	aaT	28	28	AY.121	0.003789
ORF1ab/nsp3	931	N931N	aaC	aaT	28	28	AY.42	0.001126
ORF1ab/nsp3	931	N931N	aaC	aaT	28	28	B.1.1.280	0.08642
ORF1ab/nsp3	931	N931N	aaC	aaT	28	28	B.1.302	0.373333
ORF1ab/nsp3	931	N931N	aaC	aaT	28	28	B.1.427	0.001414
ORF1ab/nsp3	931	N931N	aaC	aaT	27	27	AY.119	0.000953
ORF1ab/nsp3	931	N931N	aaC	aaT	27	27	AY.4.2	0.000586
ORF1ab/nsp3	931	N931N	aaC	aaT	27	27	P.1.12	0.013069
ORF1ab/nsp3	931	N931del	AAC	---	26	26	All	0.000005
ORF1ab/nsp3	931	N931N	aaC	aaT	25	25	AY.117	0.002113
ORF1ab/nsp3	931	N931N	aaC	aaT	25	25	B.1.623	0.013412
ORF1ab/nsp3	931	N931N	aaC	aaT	24	24	AY.98	0.001896
ORF1ab/nsp3	931	N931N	aaC	aaT	23	23	AY.98.1	0.001114
ORF1ab/nsp3	931	N931N	aaC	aaT	23	23	B.1.596	0.002004
ORF1ab/nsp3	931	N931N	aaC	aaT	22	22	AY.38	0.010984
ORF1ab/nsp3	931	N931N	aaC	aaT	22	22	Q.8	0.003628
ORF1ab/nsp3	931	N931N	aaC	aaT	21	21	B.1.243	0.001461
ORF1ab/nsp3	931	N931N	aaC	aaT	21	21	B.1.438.1	0.002252
ORF1ab/nsp3	931	N931N	aaC	aaT	21	21	B.1.561	0.008337
ORF1ab/nsp3	931	N931N	aaC	aaT	21	21	B.1.576	0.019039
ORF1ab/nsp3	931	N931T	aAc	aCc	20	20	All	0.000004
ORF1ab/nsp3	931	N931N	aaC	aaT	20	20	AY.33	0.001336
ORF1ab/nsp3	931	N931N	aaC	aaT	20	20	B.1.258.17	0.002079
ORF1ab/nsp3	931	N931N	aaC	aaT	19	19	AY.37	0.006005
ORF1ab/nsp3	931	N931N	aaC	aaT	19	19	AY.45	0.002312
ORF1ab/nsp3	931	N931N	aaC	aaT	19	19	AY.9.2	0.000698
ORF1ab/nsp3	931	N931N	aaC	aaT	19	19	B.1.258	0.001264
ORF1ab/nsp3	931	N931N	aaC	aaT	18	18	AY.1	0.007123
ORF1ab/nsp3	931	N931N	aaC	aaT	18	18	AY.100	0.000828
ORF1ab/nsp3	931	N931N	aaC	aaT	18	18	B.1.177.62	0.021454
ORF1ab/nsp3	931	N931N	aaC	aaT	17	17	AY.120.1	0.005457
ORF1ab/nsp3	931	N931N	aaC	aaT	17	17	AY.5.4	0.004704
ORF1ab/nsp3	931	N931N	aaC	aaT	17	17	AY.73	0.011311
ORF1ab/nsp3	931	N931N	aaC	aaT	17	17	B.1.1.33	0.007155
ORF1ab/nsp3	931	N931S	aAc	aGc	16	17	B.1.1.7	0.000014
ORF1ab/nsp3	931	N931S	aAC	aGT	1	17	B.1.1.7	0.000001
ORF1ab/nsp3	931	N931N	aaC	aaT	17	17	B.1.177.60	0.003713
ORF1ab/nsp3	931	N931N	aaC	aaT	16	16	AY.113	0.002278
ORF1ab/nsp3	931	N931N	aaC	aaT	16	16	AY.54	0.001526
ORF1ab/nsp3	931	N931D	Aac	Gac	16	16	P.1.15	0.003717
ORF1ab/nsp3	931	N931N	aaC	aaT	16	16	P.1.7	0.005109
ORF1ab/nsp3	931	N931N	aaC	aaT	15	15	B.1.311	0.004119
ORF1ab/nsp3	931	N931N	aaC	aaT	15	15	B.1.564.1	0.023659
ORF1ab/nsp3	931	N931N	aaC	aaT	14	14	AY.39.1	0.000555
ORF1ab/nsp3	931	N931N	aaC	aaT	14	14	AY.4.2.1	0.002086
ORF1ab/nsp3	931	N931N	aaC	aaT	14	14	B.1.232	0.007523
ORF1ab/nsp3	931	N931N	aaC	aaT	14	14	B.1.617.1	0.001806
ORF1ab/nsp3	931	N931N	aaC	aaT	13	13	AY.116	0.003728
ORF1ab/nsp3	931	N931N	aaC	aaT	13	13	AY.89	0.063725
ORF1ab/nsp3	931	N931N	aaC	aaT	13	13	B.1.551	0.016774
ORF1ab/nsp3	931	N931N	aaC	aaT	12	12	B.1.177.16	0.007973
ORF1ab/nsp3	931	N931N	aaC	aaT	12	12	B.1.466.2	0.004695
ORF1ab/nsp3	931	N931N	aaC	aaT	12	12	B.1.525	0.001358
ORF1ab/nsp3	931	N931N	aaC	aaT	12	12	B.1.637	0.000877
ORF1ab/nsp3	931	N931N	aaC	aaT	11	11	AY.4.5	0.001182
ORF1ab/nsp3	931	N931N	aaC	aaT	11	11	AY.75	0.000616
ORF1ab/nsp3	931	N931N	aaC	aaT	11	11	B.1.177.4	0.002322
ORF1ab/nsp3	931	N931K	aaC	aaA	11	11	B.1.617.2	0.000041
ORF1ab/nsp3	931	N931N	aaC	aaT	10	10	AY.29.1	0.002205
ORF1ab/nsp3	931	N931N	aaC	aaT	10	10	AY.61	0.001048
ORF1ab/nsp3	931	N931N	aaC	aaT	10	10	B.1.177.51	0.045662
ORF1ab/nsp3	931	N931N	aaC	aaT	10	10	B.1.497	0.003148
ORF1ab/nsp3	931	N931N	aaC	aaT	9	9	A.2.5	0.004491
ORF1ab/nsp3	931	N931S	aAc	aGc	9	9	AY.9.1	0.000754
ORF1ab/nsp3	931	N931T	aAc	aCc	9	9	B.1.177.24	0.011658
ORF1ab/nsp3	931	N931N	aaC	aaT	9	9	B.1.369	0.002567
ORF1ab/nsp3	931	N931N	aaC	aaT	9	9	B.1.409	0.007031
ORF1ab/nsp3	931	N931N	aaC	aaT	9	9	B.1.621	0.000797
ORF1ab/nsp3	931	N931N	aaC	aaT	9	9	D.2	0.000675
ORF1ab/nsp3	931	N931Y	Aac	Tac	8	8	All	0.000002
ORF1ab/nsp3	931	N931N	aaC	aaT	8	8	AY.5.3	0.002699
ORF1ab/nsp3	931	N931N	aaC	aaT	8	8	B.1.558	0.03653
ORF1ab/nsp3	931	N931N	aaC	aaT	8	8	B.3	0.006645
ORF1ab/nsp3	931	N931N	aaC	aaT	8	8	B.55	0.023599
ORF1ab/nsp3	931	N931N	aaC	aaT	8	8	P.1.15	0.001859
ORF1ab/nsp3	931	N931D	Aac	Gac	7	7	AY.103	0.000043
ORF1ab/nsp3	931	N931N	aaC	aaT	7	7	AY.35	0.001631
ORF1ab/nsp3	931	N931N	aaC	aaT	7	7	B	0.000895
ORF1ab/nsp3	931	N931S	aAc	aGc	7	7	B.1	0.000064
ORF1ab/nsp3	931	N931N	aaC	aaT	7	7	B.1.1.222	0.001428
ORF1ab/nsp3	931	N931N	aaC	aaT	7	7	B.1.1.297	0.01566
ORF1ab/nsp3	931	N931N	aaC	aaT	7	7	B.1.1.318	0.002112
ORF1ab/nsp3	931	N931N	aaC	aaT	7	7	B.1.1.39	0.003568
ORF1ab/nsp3	931	N931del	AAC	---	7	7	B.1.1.7	0.000006
ORF1ab/nsp3	931	N931N	aaC	aaT	7	7	B.1.177.44	0.003633
ORF1ab/nsp3	931	N931N	aaC	aaT	7	7	B.1.177.82	0.003341
ORF1ab/nsp3	931	N931N	aaC	aaT	7	7	B.1.177.86	0.001284
ORF1ab/nsp3	931	N931N	aaC	aaT	7	7	B.1.36	0.001021
ORF1ab/nsp3	931	N931N	aaC	aaT	7	7	B.1.436	0.007202
ORF1ab/nsp3	931	N931N	aaC	aaT	7	7	B.1.563	0.118644
ORF1ab/nsp3	931	N931S	aAc	aGc	7	7	B.1.617.2	0.000026
ORF1ab/nsp3	931	N931N	aaC	aaT	7	7	P.1.1	0.002224
ORF1ab/nsp3	931	N931N	aaC	aaT	6	6	AY.19	0.006842
ORF1ab/nsp3	931	N931N	aaC	aaT	6	6	AY.67	0.002786
ORF1ab/nsp3	931	N931N	aaC	aaT	6	6	B.1.1.284	0.000644
ORF1ab/nsp3	931	N931N	aaC	aaT	6	6	B.1.1.363	0.035928
ORF1ab/nsp3	931	N931N	aaC	aaT	6	6	B.1.1.432	0.007595
ORF1ab/nsp3	931	N931N	aaC	aaT	6	6	B.1.1.500	0.12
ORF1ab/nsp3	931	N931N	aaC	aaT	6	6	B.1.160.26	0.014528
ORF1ab/nsp3	931	N931N	aaC	aaT	6	6	B.1.177.43	0.008863
ORF1ab/nsp3	931	N931N	aaC	aaT	6	6	B.1.177.87	0.004367
ORF1ab/nsp3	931	N931N	aaC	aaT	6	6	C.36	0.005464
ORF1ab/nsp3	931	N931S	aAc	aGc	6	6	P.1	0.000095
ORF1ab/nsp3	931	N931N	aaC	aaT	6	6	P.2	0.00112
ORF1ab/nsp3	931	N931N	aaC	aaT	5	5	AA.1	0.036232
ORF1ab/nsp3	931	N931H	Aac	Cac	5	5	All	0.000001
ORF1ab/nsp3	931	N931del1	aaC	aa-	2	5	All	0
ORF1ab/nsp3	931	N931del1	Aac	-ac	1	5	All	0
ORF1ab/nsp3	931	N931del1	AaC	Ga-	1	5	All	0
ORF1ab/nsp3	931	N931del1	AaC	-aT	1	5	All	0
ORF1ab/nsp3	931	N931K	aaC	aaA	5	5	AY.100	0.00023
ORF1ab/nsp3	931	N931N	aaC	aaT	5	5	AY.107	0.00233
ORF1ab/nsp3	931	N931N	aaC	aaT	5	5	AY.13	0.000805
ORF1ab/nsp3	931	N931N	aaC	aaT	5	5	AY.34	0.000485
ORF1ab/nsp3	931	N931N	aaC	aaT	5	5	AY.59	0.002648
ORF1ab/nsp3	931	N931N	aaC	aaT	5	5	AY.70	0.001043
ORF1ab/nsp3	931	N931N	aaC	aaT	5	5	AY.72	0.006803
ORF1ab/nsp3	931	N931N	aaC	aaT	5	5	AY.88	0.004421
ORF1ab/nsp3	931	N931S	aAc	aGc	5	5	AY.99.2	0.000461
ORF1ab/nsp3	931	N931N	aaC	aaT	5	5	B.1.1.277	0.003794
ORF1ab/nsp3	931	N931N	aaC	aaT	5	5	B.1.1.28	0.001556
ORF1ab/nsp3	931	N931N	aaC	aaT	5	5	B.1.1.463	0.3125
ORF1ab/nsp3	931	N931N	aaC	aaT	5	5	B.1.177.21	0.000382
ORF1ab/nsp3	931	N931N	aaC	aaT	5	5	B.1.36.29	0.002587
ORF1ab/nsp3	931	N931N	aaC	aaT	5	5	B.1.416.1	0.007812
ORF1ab/nsp3	931	N931N	aaC	aaT	5	5	B.1.565	0.004052
ORF1ab/nsp3	931	N931N	aaC	aaT	5	5	B.1.575	0.001517
ORF1ab/nsp3	931	N931N	aaC	aaT	5	5	B.1.582	0.002453
ORF1ab/nsp3	931	N931N	aaC	aaT	5	5	P.1.17	0.000809
ORF1ab/nsp3	931	N931N	aaC	aaT	5	5	Q.1	0.000632
ORF1ab/nsp3	931	N931N	aaC	aaT	5	5	Q.3	0.000725
ORF1ab/nsp3	931	N931L	AAC	CTA	2	4		0.111111
ORF1ab/nsp3	931	N931L	AAC	TTA	2	4		0.111111
ORF1ab/nsp3	931	N931S	aAc	aGc	4	4	A.23.1	0.002817
ORF1ab/nsp3	931	N931I	aAc	aTc	3	4	All	0.000001
ORF1ab/nsp3	931	N931L	AAC	CTA	2	4	All	0
ORF1ab/nsp3	931	N931L	AAC	TTA	2	4	All	0
ORF1ab/nsp3	931	N931I	aAC	aTT	1	4	All	0
ORF1ab/nsp3	931	N931N	aaC	aaT	4	4	AY.110	0.000451
ORF1ab/nsp3	931	N931N	aaC	aaT	4	4	AY.36	0.000593
ORF1ab/nsp3	931	N931K	aaC	aaA	4	4	AY.43	0.000018
ORF1ab/nsp3	931	N931N	aaC	aaT	4	4	AY.62	0.001743
ORF1ab/nsp3	931	N931N	aaC	aaT	4	4	AY.77	0.00451
ORF1ab/nsp3	931	N931N	aaC	aaT	4	4	AY.93	0.001092
ORF1ab/nsp3	931	N931K	aaC	aaA	3	4	B.1	0.000027
ORF1ab/nsp3	931	N931K	aaC	aaG	1	4	B.1	0.000009
ORF1ab/nsp3	931	N931N	aaC	aaT	4	4	B.1.1.10	0.004459
ORF1ab/nsp3	931	N931N	aaC	aaT	4	4	B.1.1.220	0.007435
ORF1ab/nsp3	931	N931N	aaC	aaT	4	4	B.1.1.25	0.002274
ORF1ab/nsp3	931	N931N	aaC	aaT	4	4	B.1.1.306	0.001754
ORF1ab/nsp3	931	N931N	aaC	aaT	4	4	B.1.1.41	0.025316
ORF1ab/nsp3	931	N931N	aaC	aaT	4	4	B.1.1.412	0.030534
ORF1ab/nsp3	931	N931N	aaC	aaT	4	4	B.1.1.48	0.011494
ORF1ab/nsp3	931	N931N	aaC	aaT	4	4	B.1.1.5	0.033333
ORF1ab/nsp3	931	N931N	aaC	aaT	4	4	B.1.1.528	0.019231
ORF1ab/nsp3	931	N931T	aAc	aCc	4	4	B.1.1.7	0.000004
ORF1ab/nsp3	931	N931N	aaC	aaT	4	4	B.1.110.3	0.002874
ORF1ab/nsp3	931	N931N	aaC	aaT	4	4	B.1.179	0.015038
ORF1ab/nsp3	931	N931N	aaC	aaT	4	4	B.1.239	0.004884
ORF1ab/nsp3	931	N931N	aaC	aaT	4	4	B.1.240	0.000862
ORF1ab/nsp3	931	N931N	aaC	aaT	4	4	B.1.305	0.008602
ORF1ab/nsp3	931	N931N	aaC	aaT	4	4	B.1.320	0.004981
ORF1ab/nsp3	931	N931N	aaC	aaT	4	4	B.1.36.8	0.004
ORF1ab/nsp3	931	N931N	aaC	aaT	4	4	B.1.389	0.004008
ORF1ab/nsp3	931	N931N	aaC	aaT	4	4	B.1.396	0.002823
ORF1ab/nsp3	931	N931N	aaC	aaT	4	4	B.1.416	0.005076
ORF1ab/nsp3	931	N931N	aaC	aaT	4	4	B.1.517	0.001708
ORF1ab/nsp3	931	N931N	aaC	aaT	4	4	B.1.609	0.001918
ORF1ab/nsp3	931	N931N	aaC	aaT	4	4	P.1.2	0.004624
ORF1ab/nsp3	931	N931N	aaC	aaT	3	3	A	0.001161
ORF1ab/nsp3	931	N931N	aaC	aaT	3	3	AY.16	0.001139
ORF1ab/nsp3	931	N931N	aaC	aaT	3	3	AY.27	0.000194
ORF1ab/nsp3	931	N931N	aaC	aaT	3	3	AY.34.1	0.00153
ORF1ab/nsp3	931	N931D	Aac	Gac	3	3	AY.35	0.000699
ORF1ab/nsp3	931	N931del	AAC	---	3	3	AY.4	0.000005
ORF1ab/nsp3	931	N931D	Aac	Gac	3	3	AY.5	0.000062
ORF1ab/nsp3	931	N931N	aaC	aaT	3	3	AY.6	0.000123
ORF1ab/nsp3	931	N931N	aaC	aaT	3	3	AY.7.1	0.000338
ORF1ab/nsp3	931	N931S	aAc	aGc	3	3	AY.75	0.000168
ORF1ab/nsp3	931	N931N	aaC	aaT	3	3	AY.75.1	0.000541
ORF1ab/nsp3	931	N931N	aaC	aaT	3	3	AY.84	0.001312
ORF1ab/nsp3	931	N931N	aaC	aaT	3	3	B.1.1.317	0.001235
ORF1ab/nsp3	931	N931S	aAc	aGc	3	3	B.1.1.519	0.000119
ORF1ab/nsp3	931	N931D	Aac	Gac	3	3	B.1.1.7	0.000003
ORF1ab/nsp3	931	N931N	aaC	aaT	3	3	B.1.177.57	0.000843
ORF1ab/nsp3	931	N931N	aaC	aaT	3	3	B.1.177.69	0.004451
ORF1ab/nsp3	931	N931N	aaC	aaT	3	3	B.1.177.77	0.002179
ORF1ab/nsp3	931	N931N	aaC	aaT	3	3	B.1.177.81	0.000568
ORF1ab/nsp3	931	N931S	aAc	aGc	3	3	B.1.36	0.000438
ORF1ab/nsp3	931	N931N	aaC	aaT	3	3	B.1.36.17	0.001482
ORF1ab/nsp3	931	N931N	aaC	aaT	3	3	B.1.361	0.003866
ORF1ab/nsp3	931	N931N	aaC	aaT	3	3	B.1.420	0.03125
ORF1ab/nsp3	931	N931S	aAc	aGc	3	3	B.1.429	0.000071
ORF1ab/nsp3	931	N931N	aaC	aaT	3	3	B.12	0.019231
ORF1ab/nsp3	931	N931N	aaC	aaT	3	3	B.6	0.00273
ORF1ab/nsp3	931	N931N	aaC	aaT	3	3	P.1.10	0.000808
ORF1ab/nsp3	931	N931N	aaC	aaT	3	3	P.7	0.0131
ORF1ab/nsp3	931	N931N	aaC	aaT	3	3	Q.7	0.003333
ORF1ab/nsp3	931	N931Y	Aac	Tac	2	2		0.111111
ORF1ab/nsp3	931	N931S	aAC	aGT	2	2		0.111111
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	AU.3	0.004219
ORF1ab/nsp3	931	N931S	aAc	aGc	2	2	AY.103	0.000012
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	AY.106	0.00067
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	AY.12	0.000632
ORF1ab/nsp3	931	N931D	Aac	Gac	2	2	AY.25	0.000012
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	AY.3.1	0.000171
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	AY.32	0.001065
ORF1ab/nsp3	931	N931S	aAc	aGc	2	2	AY.39	0.000049
ORF1ab/nsp3	931	N931H	Aac	Cac	2	2	AY.4	0.000003
ORF1ab/nsp3	931	N931S	aAc	aGc	2	2	AY.4	0.000003
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	AY.4.3	0.001684
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	AY.46.1	0.002053
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	AY.46.3	0.001867
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	AY.46.4	0.000329
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	AY.46.6	0.000144
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	AY.51	0.001818
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	AY.57	0.001312
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	AY.64	0.00119
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	AY.65	0.001066
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	AY.68	0.000547
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	AY.69	0.000373
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	AY.91	0.001461
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	AY.99	0.002099
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	B.1.1.207	0.002364
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	B.1.1.216	0.001781
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	B.1.1.231	0.006192
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	B.1.1.243	0.008163
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	B.1.1.289	0.004167
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	B.1.1.291	0.001485
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	B.1.1.294	0.002532
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	B.1.1.326	0.003521
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	B.1.1.348	0.001592
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	B.1.1.37	0.000386
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	B.1.1.409	0.005666
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	B.1.1.420	0.002012
ORF1ab/nsp3	931	N931S	aAc	aGc	2	2	B.1.1.432	0.002532
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	B.1.1.44	0.004819
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	B.1.1.462	0.017241
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	B.1.1.63	0.000772
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	B.1.1.70	0.000682
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	B.1.160.15	0.009901
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	B.1.177.10	0.001756
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	B.1.177.17	0.001642
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	B.1.177.73	0.001133
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	B.1.177.83	0.002963
ORF1ab/nsp3	931	N931D	Aac	Gac	2	2	B.1.234	0.000264
ORF1ab/nsp3	931	N931S	aAc	aGc	2	2	B.1.243	0.000139
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	B.1.337	0.011173
ORF1ab/nsp3	931	N931del	AAC	---	2	2	B.1.36	0.000292
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	B.1.362.2	0.009434
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	B.1.391	0.002255
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	B.1.400	0.000858
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	B.1.432	0.022472
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	B.1.470	0.002809
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	B.1.499	0.002101
ORF1ab/nsp3	931	N931del	AAC	---	2	2	B.1.617.2	0.000008
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	B.1.621.1	0.001012
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	B.1.628	0.000705
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	B.4	0.004415
ORF1ab/nsp3	931	N931N	aaC	aaT	2	2	C.35	0.001548
ORF1ab/nsp3	931	N931I	aAc	aTc	1	2	D.2	0.000075
ORF1ab/nsp3	931	N931I	aAC	aTT	1	2	D.2	0.000075
ORF1ab/nsp3	931	N931G	AAC	GGA	1	1	A	0.000387
ORF1ab/nsp3	931	N931S	aAc	aGc	1	1	A.1	0.000282
ORF1ab/nsp3	931	N931I	aAc	aTc	1	1	A.2	0.000662
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	A.2	0.000662
ORF1ab/nsp3	931	N931del	AAC	---	1	1	A.2.2	0.001689
ORF1ab/nsp3	931	N931S	aAc	aGc	1	1	A.2.4	0.003367
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	A.2.5.1	0.004808
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	A.23.1	0.000704
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	A.27	0.001656
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	A.5	0.001923
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	AD.2	0.000219
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	AE.8	0.000489
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	AL.1	0.012987
ORF1ab/nsp3	931	N931P	AAc	CCc	1	1	All	0
ORF1ab/nsp3	931	N931G	AAC	GGA	1	1	All	0
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	AU.1	0.001266
ORF1ab/nsp3	931	N931Y	Aac	Tac	1	1	AY.103	0.000006
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	AY.105	0.000643
ORF1ab/nsp3	931	N931D	Aac	Gac	1	1	AY.106	0.000335
ORF1ab/nsp3	931	N931S	aAc	aGc	1	1	AY.108	0.001103
ORF1ab/nsp3	931	N931del	AAC	---	1	1	AY.108	0.001103
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	AY.109	0.00074
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	AY.114	0.000231
ORF1ab/nsp3	931	N931D	Aac	Gac	1	1	AY.116	0.000287
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	AY.116.1	0.000311
ORF1ab/nsp3	931	N931S	aAc	aGc	1	1	AY.13	0.000161
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	AY.14	0.000088
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	AY.16.1	0.00047
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	AY.17	0.008197
ORF1ab/nsp3	931	N931K	aaC	aaA	1	1	AY.19	0.00114
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	AY.21	0.001898
ORF1ab/nsp3	931	N931S	aAc	aGc	1	1	AY.23	0.00007
ORF1ab/nsp3	931	N931del	AAC	---	1	1	AY.26	0.000028
ORF1ab/nsp3	931	N931del	AAC	---	1	1	AY.3	0.00001
ORF1ab/nsp3	931	N931T	aAc	aCc	1	1	AY.3	0.00001
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	AY.30	0.000396
ORF1ab/nsp3	931	N931T	aAc	aCc	1	1	AY.34	0.000097
ORF1ab/nsp3	931	N931H	Aac	Cac	1	1	AY.39	0.000025
ORF1ab/nsp3	931	N931K	aaC	aaA	1	1	AY.39	0.000025
ORF1ab/nsp3	931	N931K	aaC	aaG	1	1	AY.4	0.000002
ORF1ab/nsp3	931	N931T	aAc	aCc	1	1	AY.4	0.000002
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	AY.4.1	0.000737
ORF1ab/nsp3	931	N931D	Aac	Gac	1	1	AY.4.2	0.000022
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	AY.4.4	0.000409
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	AY.40	0.000964
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	AY.41	0.000294
ORF1ab/nsp3	931	N931S	aAc	aGc	1	1	AY.43	0.000004
ORF1ab/nsp3	931	N931S	aAc	aGc	1	1	AY.44	0.000006
ORF1ab/nsp3	931	N931del1	AaC	Ga-	1	1	AY.44	0.000006
ORF1ab/nsp3	931	N931T	aAc	aCc	1	1	AY.46	0.000104
ORF1ab/nsp3	931	N931S	aAc	aGc	1	1	AY.47	0.000031
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	AY.48	0.000465
ORF1ab/nsp3	931	N931K	aaC	aaA	1	1	AY.5	0.000021
ORF1ab/nsp3	931	N931S	aAc	aGc	1	1	AY.5.3	0.000337
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	AY.53	0.000288
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	AY.55	0.000917
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	AY.56	0.001605
ORF1ab/nsp3	931	N931S	aAc	aGc	1	1	AY.6	0.000041
ORF1ab/nsp3	931	N931del	AAC	---	1	1	AY.66	0.00107
ORF1ab/nsp3	931	N931del	AAC	---	1	1	AY.67	0.000464
ORF1ab/nsp3	931	N931I	aAc	aTc	1	1	AY.7.1	0.000113
ORF1ab/nsp3	931	N931T	aAc	aCc	1	1	AY.70	0.000209
ORF1ab/nsp3	931	N931S	aAc	aGc	1	1	AY.77	0.001127
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	AY.78	0.001541
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	AY.82	0.001357
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	AY.83	0.001724
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	AY.87	0.000833
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	AY.9.1	0.000084
ORF1ab/nsp3	931	N931D	Aac	Gac	1	1	AY.9.1	0.000084
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	AY.90	0.000684
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	AY.92	0.000287
ORF1ab/nsp3	931	N931Y	Aac	Tac	1	1	AY.96	0.002075
ORF1ab/nsp3	931	N931del	AAC	---	1	1	AY.99.1	0.001553
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	AY.99.1	0.001553
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	AZ.1	0.000867
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	AZ.2	0.000821
ORF1ab/nsp3	931	N931S	aAc	aGc	1	1	B	0.000128
ORF1ab/nsp3	931	N931T	aAc	aCc	1	1	B.1	0.000009
ORF1ab/nsp3	931	N931Y	Aac	Tac	1	1	B.1.1	0.000018
ORF1ab/nsp3	931	N931S	aAc	aGc	1	1	B.1.1	0.000018
ORF1ab/nsp3	931	N931K	aaC	aaG	1	1	B.1.1	0.000018
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.1.101	0.01
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.1.13	0.035714
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.1.135	0.004695
ORF1ab/nsp3	931	N931del	AAC	---	1	1	B.1.1.142	0.017544
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.1.153	0.001095
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.1.170	0.001247
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.1.171	0.003676
ORF1ab/nsp3	931	N931Y	Aac	Tac	1	1	B.1.1.192	0.002309
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.1.241	0.00207
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.1.255	0.00303
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.1.263	0.001558
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.1.265	0.003155
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.1.268	0.014925
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.1.279	0.001121
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.1.301	0.001179
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.1.302	0.002075
ORF1ab/nsp3	931	N931del1	aaC	aa-	1	1	B.1.1.306	0.000438
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.1.31	0.066667
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.1.311	0.000358
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.1.316	0.000925
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.1.328	0.016949
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.1.333	0.001076
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.1.358	0.034483
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.1.369	0.000446
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.1.375	0.011905
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.1.385	0.004464
ORF1ab/nsp3	931	N931D	Aac	Gac	1	1	B.1.1.397	0.002252
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.1.397	0.002252
ORF1ab/nsp3	931	N931del1	AaC	-aT	1	1	B.1.1.409	0.002833
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.1.416	0.000905
ORF1ab/nsp3	931	N931Y	Aac	Tac	1	1	B.1.1.432	0.001266
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.1.433	0.001425
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.1.434	0.000349
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.1.448	0.002033
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.1.486	0.001577
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.1.521	0.005348
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.1.54	0.003021
ORF1ab/nsp3	931	N931H	Aac	Cac	1	1	B.1.1.7	0.000001
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.1.83	0.00271
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.139	0.000733
ORF1ab/nsp3	931	N931D	Aac	Gac	1	1	B.1.146	0.004237
ORF1ab/nsp3	931	N931del	AAC	---	1	1	B.1.160	0.000031
ORF1ab/nsp3	931	N931K	aaC	aaA	1	1	B.1.160	0.000031
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.160.16	0.000929
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.160.29	0.004219
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.177.19	0.001431
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.177.33	0.001645
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.177.35	0.000691
ORF1ab/nsp3	931	N931S	aAc	aGc	1	1	B.1.177.45	0.000381
ORF1ab/nsp3	931	N931K	aaC	aaA	1	1	B.1.2	0.000009
ORF1ab/nsp3	931	N931T	aAc	aCc	1	1	B.1.2	0.000009
ORF1ab/nsp3	931	N931del	AAC	---	1	1	B.1.2	0.000009
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.203	0.0625
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.206	0.000816
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.214	0.003663
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.214.2	0.0006
ORF1ab/nsp3	931	N931S	aAc	aGc	1	1	B.1.221	0.000071
ORF1ab/nsp3	931	N931P	AAc	CCc	1	1	B.1.222	0.001692
ORF1ab/nsp3	931	N931S	aAc	aGc	1	1	B.1.234	0.000132
ORF1ab/nsp3	931	N931S	aAc	aGc	1	1	B.1.240	0.000216
ORF1ab/nsp3	931	N931D	Aac	Gac	1	1	B.1.243	0.00007
ORF1ab/nsp3	931	N931K	aaC	aaA	1	1	B.1.243	0.00007
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.258.14	0.00098
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.270	0.005618
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.281	0.021739
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.319	0.003049
ORF1ab/nsp3	931	N931del	AAC	---	1	1	B.1.319	0.003049
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.325	0.006897
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.332	0.003497
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.351.2	0.000303
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.351.3	0.000876
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.355	0.011111
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.36.1	0.00114
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.36.18	0.00042
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.36.21	0.00216
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.36.24	0.006173
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.36.26	0.002857
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.36.36	0.000602
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.36.38	0.001642
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.367	0.000792
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.370	0.008
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.375	0.00082
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.381	0.007812
ORF1ab/nsp3	931	N931H	Aac	Cac	1	1	B.1.399	0.001934
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.408	0.00369
ORF1ab/nsp3	931	N931K	aaC	aaA	1	1	B.1.429	0.000024
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.456	0.003268
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.480	0.002488
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.500	0.052632
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.501	0.007353
ORF1ab/nsp3	931	N931D	Aac	Gac	1	1	B.1.503	0.002488
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.509	0.000866
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.521	0.004975
ORF1ab/nsp3	931	N931K	aaC	aaA	1	1	B.1.526	0.000024
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.527	0.003704
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.554	0.004405
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.556	0.007519
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.560	0.00463
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.564	0.000426
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.580	0.004065
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.588	0.00091
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.589	0.007576
ORF1ab/nsp3	931	N931del1	aaC	aa-	1	1	B.1.596	0.000087
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.596.1	0.009346
ORF1ab/nsp3	931	N931K	aaC	aaA	1	1	B.1.617.1	0.000129
ORF1ab/nsp3	931	N931D	Aac	Gac	1	1	B.1.617.2	0.000004
ORF1ab/nsp3	931	N931del1	Aac	-ac	1	1	B.1.617.2	0.000004
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.617.3	0.002985
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.618	0.004032
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.619.1	0.000641
ORF1ab/nsp3	931	N931S	aAc	aGc	1	1	B.1.621	0.000089
ORF1ab/nsp3	931	N931D	Aac	Gac	1	1	B.1.628	0.000352
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.9.5	0.005682
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.1.93	0.000934
ORF1ab/nsp3	931	N931del	AAC	---	1	1	B.15	0.017544
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.33	0.021277
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	B.4.7	0.010101
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	C.1	0.002392
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	C.1.2	0.004255
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	C.18	0.002591
ORF1ab/nsp3	931	N931Y	Aac	Tac	1	1	D.2	0.000075
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	N.5	0.001767
ORF1ab/nsp3	931	N931S	aAc	aGc	1	1	P.1.7	0.000319
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	P.1.9	0.004808
ORF1ab/nsp3	931	N931S	aAc	aGc	1	1	Q.8	0.000165
ORF1ab/nsp3	931	N931N	aaC	aaT	1	1	S.1	0.00495

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.