CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 931

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3931N931NN1749NsynaaCaaT235552355515510-5512
ORF1ab/nsp3931N931SN1749SnonsynaAcaGc3113080.9903545510-5512
ORF1ab/nsp3931N931SN1749SnonsynaACaGT31130.00964635510-5512
ORF1ab/nsp3931N931KN1749KnonsynaaCaaA66630.9545455510-5512
ORF1ab/nsp3931N931KN1749KnonsynaaCaaG6630.04545455510-5512
ORF1ab/nsp3931N931DN1749DnonsynAacGac464615510-5512
ORF1ab/nsp3931N931delN1749deldelAAC---262615510-5512
ORF1ab/nsp3931N931TN1749TnonsynaAcaCc202015510-5512
ORF1ab/nsp3931N931YN1749YnonsynAacTac8815510-5512
ORF1ab/nsp3931N931HN1749HnonsynAacCac5515510-5512
ORF1ab/nsp3931N931del1N1749del1delaaCaa-520.45510-5512
ORF1ab/nsp3931N931del1N1749del1delAac-ac510.25510-5512
ORF1ab/nsp3931N931del1N1749del1delAaC-aT510.25510-5512
ORF1ab/nsp3931N931del1N1749del1delAaCGa-510.25510-5512
ORF1ab/nsp3931N931IN1749InonsynaAcaTc430.755510-5512
ORF1ab/nsp3931N931LN1749LnonsynAACTTA420.55510-5512
ORF1ab/nsp3931N931LN1749LnonsynAACCTA420.55510-5512
ORF1ab/nsp3931N931IN1749InonsynaACaTT410.255510-5512
ORF1ab/nsp3931N931PN1749PnonsynAAcCCc1115510-5512
ORF1ab/nsp3931N931GN1749GnonsynAACGGA1115510-5512

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3931N931NaaCaaT2355523555All0.004505
ORF1ab/nsp3931N931NaaCaaT42934293B.1.1.70.003843
ORF1ab/nsp3931N931NaaCaaT31583158AY.40.004915
ORF1ab/nsp3931N931NaaCaaT24032403B.1.617.20.009048
ORF1ab/nsp3931N931NaaCaaT21942194AY.200.08527
ORF1ab/nsp3931N931NaaCaaT11121112B.1.20.009792
ORF1ab/nsp3931N931NaaCaaT865865AY.1020.022935
ORF1ab/nsp3931N931NaaCaaT727727AY.99.20.066998
ORF1ab/nsp3931N931NaaCaaT692692B.1.3510.020571
ORF1ab/nsp3931N931NaaCaaT555555AY.600.520638
ORF1ab/nsp3931N931NaaCaaT441441AY.30.004386
ORF1ab/nsp3931N931NaaCaaT387387B.1.5950.100992
ORF1ab/nsp3931N931NaaCaaT376376AY.440.002289
ORF1ab/nsp3931N931NaaCaaT349349AY.290.005505
ORF1ab/nsp3931N931NaaCaaT332332B.10.003041
ORF1ab/nsp3931N931NaaCaaT332332B.1.220.437418
ORF1ab/nsp3931N931NaaCaaT329329AY.430.001458
ORF1ab/nsp3931N931NaaCaaT312312AY.1030.001937
ORF1ab/nsp3931N931SaAcaGc308311All0.000059
ORF1ab/nsp3931N931SaACaGT3311All0.000001
ORF1ab/nsp3931N931NaaCaaT290290AY.390.007166
ORF1ab/nsp3931N931NaaCaaT290290P.10.004569
ORF1ab/nsp3931N931NaaCaaT280280B.1.1770.003687
ORF1ab/nsp3931N931NaaCaaT159159B.1.10.002884
ORF1ab/nsp3931N931NaaCaaT133133AY.250.0008
ORF1ab/nsp3931N931NaaCaaT125125B.1.4290.002941
ORF1ab/nsp3931N931NaaCaaT116116AY.1180.007267
ORF1ab/nsp3931N931NaaCaaT107107AY.90.007233
ORF1ab/nsp3931N931NaaCaaT8686B.1.1600.002682
ORF1ab/nsp3931N931NaaCaaT8282AY.1200.003049
ORF1ab/nsp3931N931NaaCaaT7979B.1.1.2140.004381
ORF1ab/nsp3931N931NaaCaaT7575AY.70.0147
ORF1ab/nsp3931N931NaaCaaT7373AY.260.002067
ORF1ab/nsp3931N931SaAcaGc7272AY.30.000716
ORF1ab/nsp3931N931SaAcaGc7171AY.50.001466
ORF1ab/nsp3931N931NaaCaaT6969AY.1110.012637
ORF1ab/nsp3931N931SaAcaGc6969B.1.20.000608
ORF1ab/nsp3931N931NaaCaaT6969B.1.5260.001622
ORF1ab/nsp3931N931KaaCaaA6366All0.000012
ORF1ab/nsp3931N931KaaCaaG366All0.000001
ORF1ab/nsp3931N931NaaCaaT6565B.1.177.70.010715
ORF1ab/nsp3931N931NaaCaaT6565B.1.2210.004617
ORF1ab/nsp3931N931NaaCaaT6161AY.50.00126
ORF1ab/nsp3931N931NaaCaaT5757B.1.177.540.034566
ORF1ab/nsp3931N931NaaCaaT5353B.1.4260.053481
ORF1ab/nsp3931N931NaaCaaT5252B.1.1.10.016988
ORF1ab/nsp3931N931NaaCaaT4848B.1.1260.061224
ORF1ab/nsp3931N931NaaCaaT4848P.1.140.002294
ORF1ab/nsp3931N931DAacGac4646All0.000009
ORF1ab/nsp3931N931NaaCaaT4646AY.470.001431
ORF1ab/nsp3931N931NaaCaaT4646B.1.177.750.047867
ORF1ab/nsp3931N931NaaCaaT4646R.10.00414
ORF1ab/nsp3931N931NaaCaaT3535B.1.1.1760.015378
ORF1ab/nsp3931N931NaaCaaT3434AY.230.002371
ORF1ab/nsp3931N931NaaCaaT3333AY.460.003435
ORF1ab/nsp3931N931NaaCaaT3333AY.46.20.020966
ORF1ab/nsp3931N931NaaCaaT3232AY.740.003701
ORF1ab/nsp3931N931NaaCaaT3232B.1.1.5190.001271
ORF1ab/nsp3931N931NaaCaaT3232B.1.22.11
ORF1ab/nsp3931N931KaaCaaA3131AY.1030.000192
ORF1ab/nsp3931N931NaaCaaT3030C.370.003482
ORF1ab/nsp3931N931NaaCaaT3030P.40.114068
ORF1ab/nsp3931N931NaaCaaT2929C.36.30.016449
ORF1ab/nsp3931N931NaaCaaT2828AY.1210.003789
ORF1ab/nsp3931N931NaaCaaT2828AY.420.001126
ORF1ab/nsp3931N931NaaCaaT2828B.1.1.2800.08642
ORF1ab/nsp3931N931NaaCaaT2828B.1.3020.373333
ORF1ab/nsp3931N931NaaCaaT2828B.1.4270.001414
ORF1ab/nsp3931N931NaaCaaT2727AY.1190.000953
ORF1ab/nsp3931N931NaaCaaT2727AY.4.20.000586
ORF1ab/nsp3931N931NaaCaaT2727P.1.120.013069
ORF1ab/nsp3931N931delAAC---2626All0.000005
ORF1ab/nsp3931N931NaaCaaT2525AY.1170.002113
ORF1ab/nsp3931N931NaaCaaT2525B.1.6230.013412
ORF1ab/nsp3931N931NaaCaaT2424AY.980.001896
ORF1ab/nsp3931N931NaaCaaT2323AY.98.10.001114
ORF1ab/nsp3931N931NaaCaaT2323B.1.5960.002004
ORF1ab/nsp3931N931NaaCaaT2222AY.380.010984
ORF1ab/nsp3931N931NaaCaaT2222Q.80.003628
ORF1ab/nsp3931N931NaaCaaT2121B.1.2430.001461
ORF1ab/nsp3931N931NaaCaaT2121B.1.438.10.002252
ORF1ab/nsp3931N931NaaCaaT2121B.1.5610.008337
ORF1ab/nsp3931N931NaaCaaT2121B.1.5760.019039
ORF1ab/nsp3931N931TaAcaCc2020All0.000004
ORF1ab/nsp3931N931NaaCaaT2020AY.330.001336
ORF1ab/nsp3931N931NaaCaaT2020B.1.258.170.002079
ORF1ab/nsp3931N931NaaCaaT1919AY.370.006005
ORF1ab/nsp3931N931NaaCaaT1919AY.450.002312
ORF1ab/nsp3931N931NaaCaaT1919AY.9.20.000698
ORF1ab/nsp3931N931NaaCaaT1919B.1.2580.001264
ORF1ab/nsp3931N931NaaCaaT1818AY.10.007123
ORF1ab/nsp3931N931NaaCaaT1818AY.1000.000828
ORF1ab/nsp3931N931NaaCaaT1818B.1.177.620.021454
ORF1ab/nsp3931N931NaaCaaT1717AY.120.10.005457
ORF1ab/nsp3931N931NaaCaaT1717AY.5.40.004704
ORF1ab/nsp3931N931NaaCaaT1717AY.730.011311
ORF1ab/nsp3931N931NaaCaaT1717B.1.1.330.007155
ORF1ab/nsp3931N931SaAcaGc1617B.1.1.70.000014
ORF1ab/nsp3931N931SaACaGT117B.1.1.70.000001
ORF1ab/nsp3931N931NaaCaaT1717B.1.177.600.003713
ORF1ab/nsp3931N931NaaCaaT1616AY.1130.002278
ORF1ab/nsp3931N931NaaCaaT1616AY.540.001526
ORF1ab/nsp3931N931DAacGac1616P.1.150.003717
ORF1ab/nsp3931N931NaaCaaT1616P.1.70.005109
ORF1ab/nsp3931N931NaaCaaT1515B.1.3110.004119
ORF1ab/nsp3931N931NaaCaaT1515B.1.564.10.023659
ORF1ab/nsp3931N931NaaCaaT1414AY.39.10.000555
ORF1ab/nsp3931N931NaaCaaT1414AY.4.2.10.002086
ORF1ab/nsp3931N931NaaCaaT1414B.1.2320.007523
ORF1ab/nsp3931N931NaaCaaT1414B.1.617.10.001806
ORF1ab/nsp3931N931NaaCaaT1313AY.1160.003728
ORF1ab/nsp3931N931NaaCaaT1313AY.890.063725
ORF1ab/nsp3931N931NaaCaaT1313B.1.5510.016774
ORF1ab/nsp3931N931NaaCaaT1212B.1.177.160.007973
ORF1ab/nsp3931N931NaaCaaT1212B.1.466.20.004695
ORF1ab/nsp3931N931NaaCaaT1212B.1.5250.001358
ORF1ab/nsp3931N931NaaCaaT1212B.1.6370.000877
ORF1ab/nsp3931N931NaaCaaT1111AY.4.50.001182
ORF1ab/nsp3931N931NaaCaaT1111AY.750.000616
ORF1ab/nsp3931N931NaaCaaT1111B.1.177.40.002322
ORF1ab/nsp3931N931KaaCaaA1111B.1.617.20.000041
ORF1ab/nsp3931N931NaaCaaT1010AY.29.10.002205
ORF1ab/nsp3931N931NaaCaaT1010AY.610.001048
ORF1ab/nsp3931N931NaaCaaT1010B.1.177.510.045662
ORF1ab/nsp3931N931NaaCaaT1010B.1.4970.003148
ORF1ab/nsp3931N931NaaCaaT99A.2.50.004491
ORF1ab/nsp3931N931SaAcaGc99AY.9.10.000754
ORF1ab/nsp3931N931TaAcaCc99B.1.177.240.011658
ORF1ab/nsp3931N931NaaCaaT99B.1.3690.002567
ORF1ab/nsp3931N931NaaCaaT99B.1.4090.007031
ORF1ab/nsp3931N931NaaCaaT99B.1.6210.000797
ORF1ab/nsp3931N931NaaCaaT99D.20.000675
ORF1ab/nsp3931N931YAacTac88All0.000002
ORF1ab/nsp3931N931NaaCaaT88AY.5.30.002699
ORF1ab/nsp3931N931NaaCaaT88B.1.5580.03653
ORF1ab/nsp3931N931NaaCaaT88B.30.006645
ORF1ab/nsp3931N931NaaCaaT88B.550.023599
ORF1ab/nsp3931N931NaaCaaT88P.1.150.001859
ORF1ab/nsp3931N931DAacGac77AY.1030.000043
ORF1ab/nsp3931N931NaaCaaT77AY.350.001631
ORF1ab/nsp3931N931NaaCaaT77B0.000895
ORF1ab/nsp3931N931SaAcaGc77B.10.000064
ORF1ab/nsp3931N931NaaCaaT77B.1.1.2220.001428
ORF1ab/nsp3931N931NaaCaaT77B.1.1.2970.01566
ORF1ab/nsp3931N931NaaCaaT77B.1.1.3180.002112
ORF1ab/nsp3931N931NaaCaaT77B.1.1.390.003568
ORF1ab/nsp3931N931delAAC---77B.1.1.70.000006
ORF1ab/nsp3931N931NaaCaaT77B.1.177.440.003633
ORF1ab/nsp3931N931NaaCaaT77B.1.177.820.003341
ORF1ab/nsp3931N931NaaCaaT77B.1.177.860.001284
ORF1ab/nsp3931N931NaaCaaT77B.1.360.001021
ORF1ab/nsp3931N931NaaCaaT77B.1.4360.007202
ORF1ab/nsp3931N931NaaCaaT77B.1.5630.118644
ORF1ab/nsp3931N931SaAcaGc77B.1.617.20.000026
ORF1ab/nsp3931N931NaaCaaT77P.1.10.002224
ORF1ab/nsp3931N931NaaCaaT66AY.190.006842
ORF1ab/nsp3931N931NaaCaaT66AY.670.002786
ORF1ab/nsp3931N931NaaCaaT66B.1.1.2840.000644
ORF1ab/nsp3931N931NaaCaaT66B.1.1.3630.035928
ORF1ab/nsp3931N931NaaCaaT66B.1.1.4320.007595
ORF1ab/nsp3931N931NaaCaaT66B.1.1.5000.12
ORF1ab/nsp3931N931NaaCaaT66B.1.160.260.014528
ORF1ab/nsp3931N931NaaCaaT66B.1.177.430.008863
ORF1ab/nsp3931N931NaaCaaT66B.1.177.870.004367
ORF1ab/nsp3931N931NaaCaaT66C.360.005464
ORF1ab/nsp3931N931SaAcaGc66P.10.000095
ORF1ab/nsp3931N931NaaCaaT66P.20.00112
ORF1ab/nsp3931N931NaaCaaT55AA.10.036232
ORF1ab/nsp3931N931HAacCac55All0.000001
ORF1ab/nsp3931N931del1aaCaa-25All0
ORF1ab/nsp3931N931del1Aac-ac15All0
ORF1ab/nsp3931N931del1AaCGa-15All0
ORF1ab/nsp3931N931del1AaC-aT15All0
ORF1ab/nsp3931N931KaaCaaA55AY.1000.00023
ORF1ab/nsp3931N931NaaCaaT55AY.1070.00233
ORF1ab/nsp3931N931NaaCaaT55AY.130.000805
ORF1ab/nsp3931N931NaaCaaT55AY.340.000485
ORF1ab/nsp3931N931NaaCaaT55AY.590.002648
ORF1ab/nsp3931N931NaaCaaT55AY.700.001043
ORF1ab/nsp3931N931NaaCaaT55AY.720.006803
ORF1ab/nsp3931N931NaaCaaT55AY.880.004421
ORF1ab/nsp3931N931SaAcaGc55AY.99.20.000461
ORF1ab/nsp3931N931NaaCaaT55B.1.1.2770.003794
ORF1ab/nsp3931N931NaaCaaT55B.1.1.280.001556
ORF1ab/nsp3931N931NaaCaaT55B.1.1.4630.3125
ORF1ab/nsp3931N931NaaCaaT55B.1.177.210.000382
ORF1ab/nsp3931N931NaaCaaT55B.1.36.290.002587
ORF1ab/nsp3931N931NaaCaaT55B.1.416.10.007812
ORF1ab/nsp3931N931NaaCaaT55B.1.5650.004052
ORF1ab/nsp3931N931NaaCaaT55B.1.5750.001517
ORF1ab/nsp3931N931NaaCaaT55B.1.5820.002453
ORF1ab/nsp3931N931NaaCaaT55P.1.170.000809
ORF1ab/nsp3931N931NaaCaaT55Q.10.000632
ORF1ab/nsp3931N931NaaCaaT55Q.30.000725
ORF1ab/nsp3931N931LAACCTA240.111111
ORF1ab/nsp3931N931LAACTTA240.111111
ORF1ab/nsp3931N931SaAcaGc44A.23.10.002817
ORF1ab/nsp3931N931IaAcaTc34All0.000001
ORF1ab/nsp3931N931LAACCTA24All0
ORF1ab/nsp3931N931LAACTTA24All0
ORF1ab/nsp3931N931IaACaTT14All0
ORF1ab/nsp3931N931NaaCaaT44AY.1100.000451
ORF1ab/nsp3931N931NaaCaaT44AY.360.000593
ORF1ab/nsp3931N931KaaCaaA44AY.430.000018
ORF1ab/nsp3931N931NaaCaaT44AY.620.001743
ORF1ab/nsp3931N931NaaCaaT44AY.770.00451
ORF1ab/nsp3931N931NaaCaaT44AY.930.001092
ORF1ab/nsp3931N931KaaCaaA34B.10.000027
ORF1ab/nsp3931N931KaaCaaG14B.10.000009
ORF1ab/nsp3931N931NaaCaaT44B.1.1.100.004459
ORF1ab/nsp3931N931NaaCaaT44B.1.1.2200.007435
ORF1ab/nsp3931N931NaaCaaT44B.1.1.250.002274
ORF1ab/nsp3931N931NaaCaaT44B.1.1.3060.001754
ORF1ab/nsp3931N931NaaCaaT44B.1.1.410.025316
ORF1ab/nsp3931N931NaaCaaT44B.1.1.4120.030534
ORF1ab/nsp3931N931NaaCaaT44B.1.1.480.011494
ORF1ab/nsp3931N931NaaCaaT44B.1.1.50.033333
ORF1ab/nsp3931N931NaaCaaT44B.1.1.5280.019231
ORF1ab/nsp3931N931TaAcaCc44B.1.1.70.000004
ORF1ab/nsp3931N931NaaCaaT44B.1.110.30.002874
ORF1ab/nsp3931N931NaaCaaT44B.1.1790.015038
ORF1ab/nsp3931N931NaaCaaT44B.1.2390.004884
ORF1ab/nsp3931N931NaaCaaT44B.1.2400.000862
ORF1ab/nsp3931N931NaaCaaT44B.1.3050.008602
ORF1ab/nsp3931N931NaaCaaT44B.1.3200.004981
ORF1ab/nsp3931N931NaaCaaT44B.1.36.80.004
ORF1ab/nsp3931N931NaaCaaT44B.1.3890.004008
ORF1ab/nsp3931N931NaaCaaT44B.1.3960.002823
ORF1ab/nsp3931N931NaaCaaT44B.1.4160.005076
ORF1ab/nsp3931N931NaaCaaT44B.1.5170.001708
ORF1ab/nsp3931N931NaaCaaT44B.1.6090.001918
ORF1ab/nsp3931N931NaaCaaT44P.1.20.004624
ORF1ab/nsp3931N931NaaCaaT33A0.001161
ORF1ab/nsp3931N931NaaCaaT33AY.160.001139
ORF1ab/nsp3931N931NaaCaaT33AY.270.000194
ORF1ab/nsp3931N931NaaCaaT33AY.34.10.00153
ORF1ab/nsp3931N931DAacGac33AY.350.000699
ORF1ab/nsp3931N931delAAC---33AY.40.000005
ORF1ab/nsp3931N931DAacGac33AY.50.000062
ORF1ab/nsp3931N931NaaCaaT33AY.60.000123
ORF1ab/nsp3931N931NaaCaaT33AY.7.10.000338
ORF1ab/nsp3931N931SaAcaGc33AY.750.000168
ORF1ab/nsp3931N931NaaCaaT33AY.75.10.000541
ORF1ab/nsp3931N931NaaCaaT33AY.840.001312
ORF1ab/nsp3931N931NaaCaaT33B.1.1.3170.001235
ORF1ab/nsp3931N931SaAcaGc33B.1.1.5190.000119
ORF1ab/nsp3931N931DAacGac33B.1.1.70.000003
ORF1ab/nsp3931N931NaaCaaT33B.1.177.570.000843
ORF1ab/nsp3931N931NaaCaaT33B.1.177.690.004451
ORF1ab/nsp3931N931NaaCaaT33B.1.177.770.002179
ORF1ab/nsp3931N931NaaCaaT33B.1.177.810.000568
ORF1ab/nsp3931N931SaAcaGc33B.1.360.000438
ORF1ab/nsp3931N931NaaCaaT33B.1.36.170.001482
ORF1ab/nsp3931N931NaaCaaT33B.1.3610.003866
ORF1ab/nsp3931N931NaaCaaT33B.1.4200.03125
ORF1ab/nsp3931N931SaAcaGc33B.1.4290.000071
ORF1ab/nsp3931N931NaaCaaT33B.120.019231
ORF1ab/nsp3931N931NaaCaaT33B.60.00273
ORF1ab/nsp3931N931NaaCaaT33P.1.100.000808
ORF1ab/nsp3931N931NaaCaaT33P.70.0131
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