CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 930

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3930L930LL1748LsynttGttA133012180.9157895507-5509
ORF1ab/nsp3930L930LL1748LsynTtgCtg13301120.08421055507-5509
ORF1ab/nsp3930L930ML1748MnonsynTtgAtg91791715507-5509
ORF1ab/nsp3930L930WL1748WnonsyntTgtGg939315507-5509
ORF1ab/nsp3930L930FL1748FnonsynttGttT83610.734945507-5509
ORF1ab/nsp3930L930FL1748FnonsynttGttC83220.265065507-5509
ORF1ab/nsp3930L930SL1748SnonsyntTgtCg797915507-5509
ORF1ab/nsp3930L930VL1748VnonsynTtgGtg727215507-5509
ORF1ab/nsp3930L930delL1748deldelTTG---252515507-5509
ORF1ab/nsp3930L930XL1748XnonsyntTgtAg540.85507-5509
ORF1ab/nsp3930L930XL1748XnonsyntTGtAA510.25507-5509
ORF1ab/nsp3930L930del1L1748del1delTtg-tg1115507-5509
ORF1ab/nsp3930L930QL1748QnonsynTTGCAA1115507-5509
ORF1ab/nsp3930L930del2L1748del2delTTg--g1115507-5509

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3930L930LttGttA12181330All0.000233
ORF1ab/nsp3930L930LTtgCtg1121330All0.000021
ORF1ab/nsp3930L930MTtgAtg917917All0.000175
ORF1ab/nsp3930L930LttGttA894917AY.40.001391
ORF1ab/nsp3930L930LTtgCtg23917AY.40.000036
ORF1ab/nsp3930L930MTtgAtg368368B.1.2350.926952
ORF1ab/nsp3930L930MTtgAtg273273B.1.6100.968085
ORF1ab/nsp3930L930MTtgAtg233233B.10.002134
ORF1ab/nsp3930L930LttGttA137168B.1.1.70.000123
ORF1ab/nsp3930L930LTtgCtg31168B.1.1.70.000028
ORF1ab/nsp3930L930WtTgtGg9393All0.000018
ORF1ab/nsp3930L930FttGttT6183All0.000012
ORF1ab/nsp3930L930FttGttC2283All0.000004
ORF1ab/nsp3930L930StTgtCg7979All0.000015
ORF1ab/nsp3930L930VTtgGtg7272All0.000014
ORF1ab/nsp3930L930WtTgtGg4848AY.440.000292
ORF1ab/nsp3930L930LttGttA4142AY.390.001013
ORF1ab/nsp3930L930LTtgCtg142AY.390.000025
ORF1ab/nsp3930L930WtTgtGg3737B.1.20.000326
ORF1ab/nsp3930L930LttGttA2333B.1.617.20.000087
ORF1ab/nsp3930L930LTtgCtg1033B.1.617.20.000038
ORF1ab/nsp3930L930StTgtCg2727AY.40.000042
ORF1ab/nsp3930L930delTTG---2525All0.000005
ORF1ab/nsp3930L930MTtgAtg2525P.1.140.001195
ORF1ab/nsp3930L930VTtgGtg2323B.1.1770.000303
ORF1ab/nsp3930L930FttGttT2121AY.430.000093
ORF1ab/nsp3930L930LttGttA2020AY.230.001395
ORF1ab/nsp3930L930LttGttA1318AY.250.000078
ORF1ab/nsp3930L930LTtgCtg518AY.250.00003
ORF1ab/nsp3930L930LttGttA1517B.1.6370.001096
ORF1ab/nsp3930L930LTtgCtg217B.1.6370.000146
ORF1ab/nsp3930L930StTgtCg1616B.1.1.70.000014
ORF1ab/nsp3930L930VTtgGtg1515AY.260.000425
ORF1ab/nsp3930L930FttGttC1113B.1.20.000097
ORF1ab/nsp3930L930FttGttT213B.1.20.000018
ORF1ab/nsp3930L930VTtgGtg1111B.10.000101
ORF1ab/nsp3930L930LttGttA89B.1.20.00007
ORF1ab/nsp3930L930LTtgCtg19B.1.20.000009
ORF1ab/nsp3930L930LttGttA99B.1.6280.003171
ORF1ab/nsp3930L930LTtgCtg88AY.1190.000282
ORF1ab/nsp3930L930delTTG---77B.1.1.70.000006
ORF1ab/nsp3930L930VTtgGtg77B.1.1.70.000006
ORF1ab/nsp3930L930LttGttA67P.10.000095
ORF1ab/nsp3930L930LTtgCtg17P.10.000016
ORF1ab/nsp3930L930FttGttT66AY.40.000009
ORF1ab/nsp3930L930WtTgtGg66AY.430.000027
ORF1ab/nsp3930L930LttGttA56AY.430.000022
ORF1ab/nsp3930L930LTtgCtg16AY.430.000004
ORF1ab/nsp3930L930LTtgCtg66AY.470.000187
ORF1ab/nsp3930L930FttGttT46B.10.000037
ORF1ab/nsp3930L930FttGttC26B.10.000018
ORF1ab/nsp3930L930XtTgtAg45All0.000001
ORF1ab/nsp3930L930XtTGtAA15All0
ORF1ab/nsp3930L930StTgtCg55AY.1030.000031
ORF1ab/nsp3930L930FttGttC35B.1.1.70.000003
ORF1ab/nsp3930L930FttGttT25B.1.1.70.000002
ORF1ab/nsp3930L930StTgtCg55B.1.5260.000118
ORF1ab/nsp3930L930FttGttC240.111111
ORF1ab/nsp3930L930FttGttT240.111111
ORF1ab/nsp3930L930LttGttA44AY.420.000161
ORF1ab/nsp3930L930StTgtCg44AY.430.000018
ORF1ab/nsp3930L930LttGttA44D.20.0003
ORF1ab/nsp3930L930LttGttA33AY.1080.003308
ORF1ab/nsp3930L930LttGttA23AY.260.000057
ORF1ab/nsp3930L930LTtgCtg13AY.260.000028
ORF1ab/nsp3930L930delTTG---33AY.40.000005
ORF1ab/nsp3930L930LttGttA33AY.440.000018
ORF1ab/nsp3930L930LttGttA23B.10.000018
ORF1ab/nsp3930L930LTtgCtg13B.10.000009
ORF1ab/nsp3930L930LTtgCtg23B.1.10.000036
ORF1ab/nsp3930L930LttGttA13B.1.10.000018
ORF1ab/nsp3930L930MTtgAtg33B.1.1.70.000003
ORF1ab/nsp3930L930LTtgCtg33B.1.1770.00004
ORF1ab/nsp3930L930FttGttT33B.1.617.20.000011
ORF1ab/nsp3930L930LttGttA33B.1.6210.000266
ORF1ab/nsp3930L930StTgtCg22AY.1000.000092
ORF1ab/nsp3930L930LTtgCtg12AY.1000.000046
ORF1ab/nsp3930L930LttGttA12AY.1000.000046
ORF1ab/nsp3930L930MTtgAtg22AY.1020.000053
ORF1ab/nsp3930L930LTtgCtg22AY.200.000078
ORF1ab/nsp3930L930FttGttC22AY.200.000078
ORF1ab/nsp3930L930FttGttT22AY.250.000012
ORF1ab/nsp3930L930FttGttT22AY.390.000049
ORF1ab/nsp3930L930VTtgGtg22AY.4.20.000043
ORF1ab/nsp3930L930FttGttT22AY.420.00008
ORF1ab/nsp3930L930MTtgAtg22AY.50.000041
ORF1ab/nsp3930L930VTtgGtg22B.1.20.000018
ORF1ab/nsp3930L930StTgtCg22B.1.2580.000133
ORF1ab/nsp3930L930MTtgAtg22B.1.2790.001027
ORF1ab/nsp3930L930delTTG---22B.1.360.000292
ORF1ab/nsp3930L930StTgtCg22B.1.5240.002813
ORF1ab/nsp3930L930VTtgGtg22B.1.617.20.000008
ORF1ab/nsp3930L930StTgtCg22B.1.617.20.000008
ORF1ab/nsp3930L930LTtgCtg22B.1.621.10.001012
ORF1ab/nsp3930L930FttGttT22D.20.00015
ORF1ab/nsp3930L930LttGttA22P.20.000373
ORF1ab/nsp3930L930LttGttA22Q.80.00033
ORF1ab/nsp3930L930FttGttT11A0.000387
ORF1ab/nsp3930L930LttGttA11A.10.000282
ORF1ab/nsp3930L930delTTG---11A.2.20.001689
ORF1ab/nsp3930L930QTTGCAA11All0
ORF1ab/nsp3930L930del2TTg--g11All0
ORF1ab/nsp3930L930del1Ttg-tg11All0
ORF1ab/nsp3930L930LTtgCtg11AU.10.001266
ORF1ab/nsp3930L930VTtgGtg11AY.1000.000046
ORF1ab/nsp3930L930XtTgtAg11AY.1030.000006
ORF1ab/nsp3930L930delTTG---11AY.1080.001103
ORF1ab/nsp3930L930LttGttA11AY.1130.000142
ORF1ab/nsp3930L930FttGttT11AY.1160.000287
ORF1ab/nsp3930L930FttGttT11AY.1170.000085
ORF1ab/nsp3930L930LttGttA11AY.1170.000085
ORF1ab/nsp3930L930StTgtCg11AY.1180.000063
ORF1ab/nsp3930L930WtTgtGg11AY.1190.000035
ORF1ab/nsp3930L930StTgtCg11AY.1200.000037
ORF1ab/nsp3930L930LttGttA11AY.120.10.000321
ORF1ab/nsp3930L930LttGttA11AY.23.10.000417
ORF1ab/nsp3930L930StTgtCg11AY.250.000006
ORF1ab/nsp3930L930delTTG---11AY.260.000028
ORF1ab/nsp3930L930LttGttA11AY.270.000065
ORF1ab/nsp3930L930LTtgCtg11AY.30.00001
ORF1ab/nsp3930L930FttGttT11AY.30.00001
ORF1ab/nsp3930L930delTTG---11AY.30.00001
ORF1ab/nsp3930L930LttGttA11AY.3.10.000085
ORF1ab/nsp3930L930StTgtCg11AY.330.000067
ORF1ab/nsp3930L930LttGttA11AY.330.000067
ORF1ab/nsp3930L930MTtgAtg11AY.390.000025
ORF1ab/nsp3930L930VTtgGtg11AY.40.000002
ORF1ab/nsp3930L930LTtgCtg11AY.4.20.000022
ORF1ab/nsp3930L930LttGttA11AY.4.2.10.000149
ORF1ab/nsp3930L930StTgtCg11AY.4.50.000107
ORF1ab/nsp3930L930QTTGCAA11AY.440.000006
ORF1ab/nsp3930L930FttGttT11AY.440.000006
ORF1ab/nsp3930L930XtTgtAg11AY.440.000006
ORF1ab/nsp3930L930VTtgGtg11AY.440.000006
ORF1ab/nsp3930L930VTtgGtg11AY.450.000122
ORF1ab/nsp3930L930LttGttA11AY.460.000104
ORF1ab/nsp3930L930LttGttA11AY.46.20.000635
ORF1ab/nsp3930L930StTgtCg11AY.470.000031
ORF1ab/nsp3930L930LTtgCtg11AY.50.000021
ORF1ab/nsp3930L930delTTG---11AY.660.00107
ORF1ab/nsp3930L930delTTG---11AY.670.000464
ORF1ab/nsp3930L930del2TTg--g11AY.670.000464
ORF1ab/nsp3930L930LttGttA11AY.750.000056
ORF1ab/nsp3930L930LTtgCtg11AY.75.10.00018
ORF1ab/nsp3930L930LttGttA11AY.820.001357
ORF1ab/nsp3930L930LttGttA11AY.980.000079
ORF1ab/nsp3930L930delTTG---11AY.99.10.001553
ORF1ab/nsp3930L930StTgtCg11B0.000128
ORF1ab/nsp3930L930VTtgGtg11B.1.10.000018
ORF1ab/nsp3930L930MTtgAtg11B.1.10.000018
ORF1ab/nsp3930L930MTtgAtg11B.1.1.100.001115
ORF1ab/nsp3930L930FttGttT11B.1.1.120.007463
ORF1ab/nsp3930L930LTtgCtg11B.1.1.1380.006061
ORF1ab/nsp3930L930delTTG---11B.1.1.1420.017544
ORF1ab/nsp3930L930FttGttC11B.1.1.1700.001247
ORF1ab/nsp3930L930VTtgGtg11B.1.1.2180.007692
ORF1ab/nsp3930L930MTtgAtg11B.1.1.270.00565
ORF1ab/nsp3930L930LttGttA11B.1.1.3000.010753
ORF1ab/nsp3930L930MTtgAtg11B.1.1.3690.000446
ORF1ab/nsp3930L930LTtgCtg11B.1.1.390.00051
ORF1ab/nsp3930L930VTtgGtg11B.1.1.4320.001266
ORF1ab/nsp3930L930FttGttT11B.1.1.4610.012048
ORF1ab/nsp3930L930WtTgtGg11B.1.1.70.000001
ORF1ab/nsp3930L930StTgtCg11B.1.1600.000031
ORF1ab/nsp3930L930LttGttA11B.1.1600.000031
ORF1ab/nsp3930L930delTTG---11B.1.1600.000031
ORF1ab/nsp3930L930FttGttT11B.1.1600.000031
ORF1ab/nsp3930L930FttGttT11B.1.1770.000013
ORF1ab/nsp3930L930StTgtCg11B.1.1770.000013
ORF1ab/nsp3930L930XtTgtAg11B.1.177.40.000211
ORF1ab/nsp3930L930LttGttA11B.1.177.90.001332
ORF1ab/nsp3930L930del1Ttg-tg11B.1.20.000009
ORF1ab/nsp3930L930delTTG---11B.1.20.000009
ORF1ab/nsp3930L930LTtgCtg11B.1.214.20.0006
ORF1ab/nsp3930L930FttGttT11B.1.2220.001692
ORF1ab/nsp3930L930MTtgAtg11B.1.2340.000132
ORF1ab/nsp3930L930StTgtCg11B.1.2360.002053
ORF1ab/nsp3930L930XtTGtAA11B.1.2580.000067
ORF1ab/nsp3930L930StTgtCg11B.1.258.170.000104
ORF1ab/nsp3930L930LTtgCtg11B.1.3110.000275
ORF1ab/nsp3930L930delTTG---11B.1.3190.003049
ORF1ab/nsp3930L930MTtgAtg11B.1.3320.003497
ORF1ab/nsp3930L930FttGttT11B.1.3510.00003
ORF1ab/nsp3930L930StTgtCg11B.1.351.20.000303
ORF1ab/nsp3930L930VTtgGtg11B.1.36.260.002857
ORF1ab/nsp3930L930FttGttC11B.1.36.290.000517
ORF1ab/nsp3930L930LTtgCtg11B.1.3610.001289
ORF1ab/nsp3930L930LttGttA11B.1.3750.00082
ORF1ab/nsp3930L930LttGttA11B.1.4110.003704
ORF1ab/nsp3930L930StTgtCg11B.1.4700.001404
ORF1ab/nsp3930L930FttGttT11B.1.5250.000113
ORF1ab/nsp3930L930VTtgGtg11B.1.5410.004425
ORF1ab/nsp3930L930VTtgGtg11B.1.5900.004545
ORF1ab/nsp3930L930LTtgCtg11B.1.5950.000261
ORF1ab/nsp3930L930MTtgAtg11B.1.6090.000479
ORF1ab/nsp3930L930MTtgAtg11B.1.617.20.000004
ORF1ab/nsp3930L930delTTG---11B.1.617.20.000004
ORF1ab/nsp3930L930delTTG---11B.150.017544
ORF1ab/nsp3930L930LttGttA11B.400.000364
ORF1ab/nsp3930L930FttGttT11B.6.60.000889
ORF1ab/nsp3930L930XtTgtAg11D.20.000075
ORF1ab/nsp3930L930StTgtCg11D.20.000075

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.