CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 930

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3930L930LL1748LsynttGttA133012180.9157895507-5509
ORF1ab/nsp3930L930LL1748LsynTtgCtg13301120.08421055507-5509
ORF1ab/nsp3930L930ML1748MnonsynTtgAtg91791715507-5509
ORF1ab/nsp3930L930WL1748WnonsyntTgtGg939315507-5509
ORF1ab/nsp3930L930FL1748FnonsynttGttT83610.734945507-5509
ORF1ab/nsp3930L930FL1748FnonsynttGttC83220.265065507-5509
ORF1ab/nsp3930L930SL1748SnonsyntTgtCg797915507-5509
ORF1ab/nsp3930L930VL1748VnonsynTtgGtg727215507-5509
ORF1ab/nsp3930L930delL1748deldelTTG---252515507-5509
ORF1ab/nsp3930L930XL1748XnonsyntTgtAg540.85507-5509
ORF1ab/nsp3930L930XL1748XnonsyntTGtAA510.25507-5509
ORF1ab/nsp3930L930del1L1748del1delTtg-tg1115507-5509
ORF1ab/nsp3930L930QL1748QnonsynTTGCAA1115507-5509
ORF1ab/nsp3930L930del2L1748del2delTTg--g1115507-5509

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3930L930LttGttA12181330All0.000233
ORF1ab/nsp3930L930LTtgCtg1121330All0.000021
ORF1ab/nsp3930L930MTtgAtg917917All0.000175
ORF1ab/nsp3930L930LttGttA894917AY.40.001391
ORF1ab/nsp3930L930LTtgCtg23917AY.40.000036
ORF1ab/nsp3930L930MTtgAtg368368B.1.2350.926952
ORF1ab/nsp3930L930MTtgAtg273273B.1.6100.968085
ORF1ab/nsp3930L930MTtgAtg233233B.10.002134
ORF1ab/nsp3930L930LttGttA137168B.1.1.70.000123
ORF1ab/nsp3930L930LTtgCtg31168B.1.1.70.000028
ORF1ab/nsp3930L930WtTgtGg9393All0.000018
ORF1ab/nsp3930L930FttGttT6183All0.000012
ORF1ab/nsp3930L930FttGttC2283All0.000004
ORF1ab/nsp3930L930StTgtCg7979All0.000015
ORF1ab/nsp3930L930VTtgGtg7272All0.000014
ORF1ab/nsp3930L930WtTgtGg4848AY.440.000292
ORF1ab/nsp3930L930LttGttA4142AY.390.001013
ORF1ab/nsp3930L930LTtgCtg142AY.390.000025
ORF1ab/nsp3930L930WtTgtGg3737B.1.20.000326
ORF1ab/nsp3930L930LttGttA2333B.1.617.20.000087
ORF1ab/nsp3930L930LTtgCtg1033B.1.617.20.000038
ORF1ab/nsp3930L930StTgtCg2727AY.40.000042
ORF1ab/nsp3930L930delTTG---2525All0.000005
ORF1ab/nsp3930L930MTtgAtg2525P.1.140.001195
ORF1ab/nsp3930L930VTtgGtg2323B.1.1770.000303
ORF1ab/nsp3930L930FttGttT2121AY.430.000093
ORF1ab/nsp3930L930LttGttA2020AY.230.001395
ORF1ab/nsp3930L930LttGttA1318AY.250.000078
ORF1ab/nsp3930L930LTtgCtg518AY.250.00003
ORF1ab/nsp3930L930LttGttA1517B.1.6370.001096
ORF1ab/nsp3930L930LTtgCtg217B.1.6370.000146
ORF1ab/nsp3930L930StTgtCg1616B.1.1.70.000014
ORF1ab/nsp3930L930VTtgGtg1515AY.260.000425
ORF1ab/nsp3930L930FttGttC1113B.1.20.000097
ORF1ab/nsp3930L930FttGttT213B.1.20.000018
ORF1ab/nsp3930L930VTtgGtg1111B.10.000101
ORF1ab/nsp3930L930LttGttA89B.1.20.00007
ORF1ab/nsp3930L930LTtgCtg19B.1.20.000009
ORF1ab/nsp3930L930LttGttA99B.1.6280.003171
ORF1ab/nsp3930L930LTtgCtg88AY.1190.000282
ORF1ab/nsp3930L930delTTG---77B.1.1.70.000006
ORF1ab/nsp3930L930VTtgGtg77B.1.1.70.000006
ORF1ab/nsp3930L930LttGttA67P.10.000095
ORF1ab/nsp3930L930LTtgCtg17P.10.000016
ORF1ab/nsp3930L930FttGttT66AY.40.000009
ORF1ab/nsp3930L930WtTgtGg66AY.430.000027
ORF1ab/nsp3930L930LttGttA56AY.430.000022
ORF1ab/nsp3930L930LTtgCtg16AY.430.000004
ORF1ab/nsp3930L930LTtgCtg66AY.470.000187
ORF1ab/nsp3930L930FttGttT46B.10.000037
ORF1ab/nsp3930L930FttGttC26B.10.000018
ORF1ab/nsp3930L930XtTgtAg45All0.000001
ORF1ab/nsp3930L930XtTGtAA15All0
ORF1ab/nsp3930L930StTgtCg55AY.1030.000031
ORF1ab/nsp3930L930FttGttC35B.1.1.70.000003
ORF1ab/nsp3930L930FttGttT25B.1.1.70.000002
ORF1ab/nsp3930L930StTgtCg55B.1.5260.000118
ORF1ab/nsp3930L930FttGttC240.111111
ORF1ab/nsp3930L930FttGttT240.111111
ORF1ab/nsp3930L930LttGttA44AY.420.000161
ORF1ab/nsp3930L930StTgtCg44AY.430.000018
ORF1ab/nsp3930L930LttGttA44D.20.0003
ORF1ab/nsp3930L930LttGttA33AY.1080.003308
ORF1ab/nsp3930L930LttGttA23AY.260.000057
ORF1ab/nsp3930L930LTtgCtg13AY.260.000028
ORF1ab/nsp3930L930delTTG---33AY.40.000005
ORF1ab/nsp3930L930LttGttA33AY.440.000018
ORF1ab/nsp3930L930LttGttA23B.10.000018
ORF1ab/nsp3930L930LTtgCtg13B.10.000009
ORF1ab/nsp3930L930LTtgCtg23B.1.10.000036
ORF1ab/nsp3930L930LttGttA13B.1.10.000018
ORF1ab/nsp3930L930MTtgAtg33B.1.1.70.000003
ORF1ab/nsp3930L930LTtgCtg33B.1.1770.00004
ORF1ab/nsp3930L930FttGttT33B.1.617.20.000011
ORF1ab/nsp3930L930LttGttA33B.1.6210.000266
ORF1ab/nsp3930L930StTgtCg22AY.1000.000092
ORF1ab/nsp3930L930LTtgCtg12AY.1000.000046
ORF1ab/nsp3930L930LttGttA12AY.1000.000046
ORF1ab/nsp3930L930MTtgAtg22AY.1020.000053
ORF1ab/nsp3930L930LTtgCtg22AY.200.000078
ORF1ab/nsp3930L930FttGttC22AY.200.000078
ORF1ab/nsp3930L930FttGttT22AY.250.000012
ORF1ab/nsp3930L930FttGttT22AY.390.000049
ORF1ab/nsp3930L930VTtgGtg22AY.4.20.000043
ORF1ab/nsp3930L930FttGttT22AY.420.00008
ORF1ab/nsp3930L930MTtgAtg22AY.50.000041
ORF1ab/nsp3930L930VTtgGtg22B.1.20.000018
ORF1ab/nsp3930L930StTgtCg22B.1.2580.000133
ORF1ab/nsp3930L930MTtgAtg22B.1.2790.001027
ORF1ab/nsp3930L930delTTG---22B.1.360.000292
ORF1ab/nsp3930L930StTgtCg22B.1.5240.002813
ORF1ab/nsp3930L930VTtgGtg22B.1.617.20.000008
ORF1ab/nsp3930L930StTgtCg22B.1.617.20.000008
ORF1ab/nsp3930L930LTtgCtg22B.1.621.10.001012
ORF1ab/nsp3930L930FttGttT22D.20.00015
ORF1ab/nsp3930L930LttGttA22P.20.000373
ORF1ab/nsp3930L930LttGttA22Q.80.00033
ORF1ab/nsp3930L930FttGttT11A0.000387
ORF1ab/nsp3930L930LttGttA11A.10.000282
ORF1ab/nsp3930L930delTTG---11A.2.20.001689
ORF1ab/nsp3930L930QTTGCAA11All0
ORF1ab/nsp3930L930del2TTg--g11All0
ORF1ab/nsp3930L930del1Ttg-tg11All0
ORF1ab/nsp3930L930LTtgCtg11AU.10.001266
ORF1ab/nsp3930L930VTtgGtg11AY.1000.000046
ORF1ab/nsp3930L930XtTgtAg11AY.1030.000006
ORF1ab/nsp3930L930delTTG---11AY.1080.001103
ORF1ab/nsp3930L930LttGttA11AY.1130.000142
ORF1ab/nsp3930L930FttGttT11AY.1160.000287
ORF1ab/nsp3930L930FttGttT11AY.1170.000085
ORF1ab/nsp3930L930LttGttA11AY.1170.000085
ORF1ab/nsp3930L930StTgtCg11AY.1180.000063
ORF1ab/nsp3930L930WtTgtGg11AY.1190.000035
ORF1ab/nsp3930L930StTgtCg11AY.1200.000037
ORF1ab/nsp3930L930LttGttA11AY.120.10.000321
ORF1ab/nsp3930L930LttGttA11AY.23.10.000417
ORF1ab/nsp3930L930StTgtCg11AY.250.000006
ORF1ab/nsp3930L930delTTG---11AY.260.000028
ORF1ab/nsp3930L930LttGttA11AY.270.000065
ORF1ab/nsp3930L930LTtgCtg11AY.30.00001
ORF1ab/nsp3930L930FttGttT11AY.30.00001
ORF1ab/nsp3930L930delTTG---11AY.30.00001
ORF1ab/nsp3930L930LttGttA11AY.3.10.000085
ORF1ab/nsp3930L930StTgtCg11AY.330.000067
ORF1ab/nsp3930L930LttGttA11AY.330.000067
ORF1ab/nsp3930L930MTtgAtg11AY.390.000025
ORF1ab/nsp3930L930VTtgGtg11AY.40.000002
ORF1ab/nsp3930L930LTtgCtg11AY.4.20.000022
ORF1ab/nsp3930L930LttGttA11AY.4.2.10.000149
ORF1ab/nsp3930L930StTgtCg11AY.4.50.000107
ORF1ab/nsp3930L930QTTGCAA11AY.440.000006
ORF1ab/nsp3930L930FttGttT11AY.440.000006
ORF1ab/nsp3930L930XtTgtAg11AY.440.000006
ORF1ab/nsp3930L930VTtgGtg11AY.440.000006
ORF1ab/nsp3930L930VTtgGtg11AY.450.000122
ORF1ab/nsp3930L930LttGttA11AY.460.000104
ORF1ab/nsp3930L930LttGttA11AY.46.20.000635
ORF1ab/nsp3930L930StTgtCg11AY.470.000031
ORF1ab/nsp3930L930LTtgCtg11AY.50.000021
ORF1ab/nsp3930L930delTTG---11AY.660.00107
ORF1ab/nsp3930L930delTTG---11AY.670.000464
ORF1ab/nsp3930L930del2TTg--g11AY.670.000464
ORF1ab/nsp3930L930LttGttA11AY.750.000056
ORF1ab/nsp3930L930LTtgCtg11AY.75.10.00018
ORF1ab/nsp3930L930LttGttA11AY.820.001357
ORF1ab/nsp3930L930LttGttA11AY.980.000079
ORF1ab/nsp3930L930delTTG---11AY.99.10.001553
ORF1ab/nsp3930L930StTgtCg11B0.000128
ORF1ab/nsp3930L930VTtgGtg11B.1.10.000018
ORF1ab/nsp3930L930MTtgAtg11B.1.10.000018
ORF1ab/nsp3930L930MTtgAtg11B.1.1.100.001115
ORF1ab/nsp3930L930FttGttT11B.1.1.120.007463
ORF1ab/nsp3930L930LTtgCtg11B.1.1.1380.006061
ORF1ab/nsp3930L930delTTG---11B.1.1.1420.017544
ORF1ab/nsp3930L930FttGttC11B.1.1.1700.001247
ORF1ab/nsp3930L930VTtgGtg11B.1.1.2180.007692
ORF1ab/nsp3930L930MTtgAtg11B.1.1.270.00565
ORF1ab/nsp3930L930LttGttA11B.1.1.3000.010753
ORF1ab/nsp3930L930MTtgAtg11B.1.1.3690.000446
ORF1ab/nsp3930L930LTtgCtg11B.1.1.390.00051
ORF1ab/nsp3930L930VTtgGtg11B.1.1.4320.001266
ORF1ab/nsp3930L930FttGttT11B.1.1.4610.012048
ORF1ab/nsp3930L930WtTgtGg11B.1.1.70.000001
ORF1ab/nsp3930L930StTgtCg11B.1.1600.000031
ORF1ab/nsp3930L930LttGttA11B.1.1600.000031
ORF1ab/nsp3930L930delTTG---11B.1.1600.000031
ORF1ab/nsp3930L930FttGttT11B.1.1600.000031
ORF1ab/nsp3930L930FttGttT11B.1.1770.000013
ORF1ab/nsp3930L930StTgtCg11B.1.1770.000013
ORF1ab/nsp3930L930XtTgtAg11B.1.177.40.000211
ORF1ab/nsp3930L930LttGttA11B.1.177.90.001332
ORF1ab/nsp3930L930del1Ttg-tg11B.1.20.000009
ORF1ab/nsp3930L930delTTG---11B.1.20.000009
ORF1ab/nsp3930L930LTtgCtg11B.1.214.20.0006
ORF1ab/nsp3930L930FttGttT11B.1.2220.001692
ORF1ab/nsp3930L930MTtgAtg11B.1.2340.000132
ORF1ab/nsp3930L930StTgtCg11B.1.2360.002053
ORF1ab/nsp3930L930XtTGtAA11B.1.2580.000067
ORF1ab/nsp3930L930StTgtCg11B.1.258.170.000104
ORF1ab/nsp3930L930LTtgCtg11B.1.3110.000275
ORF1ab/nsp3930L930delTTG---11B.1.3190.003049
ORF1ab/nsp3930L930MTtgAtg11B.1.3320.003497
ORF1ab/nsp3930L930FttGttT11B.1.3510.00003
ORF1ab/nsp3930L930StTgtCg11B.1.351.20.000303
ORF1ab/nsp3930L930VTtgGtg11B.1.36.260.002857
ORF1ab/nsp3930L930FttGttC11B.1.36.290.000517
ORF1ab/nsp3930L930LTtgCtg11B.1.3610.001289
ORF1ab/nsp3930L930LttGttA11B.1.3750.00082
ORF1ab/nsp3930L930LttGttA11B.1.4110.003704
ORF1ab/nsp3930L930StTgtCg11B.1.4700.001404
ORF1ab/nsp3930L930FttGttT11B.1.5250.000113
ORF1ab/nsp3930L930VTtgGtg11B.1.5410.004425
ORF1ab/nsp3930L930VTtgGtg11B.1.5900.004545
ORF1ab/nsp3930L930LTtgCtg11B.1.5950.000261
ORF1ab/nsp3930L930MTtgAtg11B.1.6090.000479
ORF1ab/nsp3930L930MTtgAtg11B.1.617.20.000004
ORF1ab/nsp3930L930delTTG---11B.1.617.20.000004
ORF1ab/nsp3930L930delTTG---11B.150.017544
ORF1ab/nsp3930L930LttGttA11B.400.000364
ORF1ab/nsp3930L930FttGttT11B.6.60.000889
ORF1ab/nsp3930L930XtTgtAg11D.20.000075
ORF1ab/nsp3930L930StTgtCg11D.20.000075