CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 93 | S93F | S911F | nonsyn | tCt | tTt | 1669 | 1668 | 0.999401 | 2996-2998 |
ORF1ab/nsp3 | 93 | S93F | S911F | nonsyn | tCT | tTC | 1669 | 1 | 0.000599161 | 2996-2998 |
ORF1ab/nsp3 | 93 | S93S | S911S | syn | tcT | tcC | 477 | 334 | 0.70021 | 2996-2998 |
ORF1ab/nsp3 | 93 | S93S | S911S | syn | tcT | tcG | 477 | 86 | 0.180294 | 2996-2998 |
ORF1ab/nsp3 | 93 | S93S | S911S | syn | tcT | tcA | 477 | 57 | 0.119497 | 2996-2998 |
ORF1ab/nsp3 | 93 | S93A | S911A | nonsyn | Tct | Gct | 385 | 385 | 1 | 2996-2998 |
ORF1ab/nsp3 | 93 | S93Y | S911Y | nonsyn | tCt | tAt | 210 | 210 | 1 | 2996-2998 |
ORF1ab/nsp3 | 93 | S93P | S911P | nonsyn | Tct | Cct | 40 | 36 | 0.9 | 2996-2998 |
ORF1ab/nsp3 | 93 | S93P | S911P | nonsyn | TcT | CcG | 40 | 2 | 0.05 | 2996-2998 |
ORF1ab/nsp3 | 93 | S93P | S911P | nonsyn | TcT | CcA | 40 | 2 | 0.05 | 2996-2998 |
ORF1ab/nsp3 | 93 | S93del | S911del | del | TCT | --- | 39 | 39 | 1 | 2996-2998 |
ORF1ab/nsp3 | 93 | S93T | S911T | nonsyn | Tct | Act | 2 | 2 | 1 | 2996-2998 |
ORF1ab/nsp3 | 93 | S93C | S911C | nonsyn | tCt | tGt | 2 | 2 | 1 | 2996-2998 |
ORF1ab/nsp3 | 93 | S93del1 | S911del1 | del | tCt | t-t | 2 | 1 | 0.5 | 2996-2998 |
ORF1ab/nsp3 | 93 | S93del2 | S911del2 | del | TCt | --t | 2 | 1 | 0.5 | 2996-2998 |
ORF1ab/nsp3 | 93 | S93del1 | S911del1 | del | tcT | tc- | 2 | 1 | 0.5 | 2996-2998 |
ORF1ab/nsp3 | 93 | S93del2 | S911del2 | del | TCT | --N | 2 | 1 | 0.5 | 2996-2998 |
ORF1ab/nsp3 | 93 | S93D | S911D | nonsyn | TCt | GAt | 1 | 1 | 1 | 2996-2998 |
ORF1ab/nsp3 | 93 | S93N | S911N | nonsyn | TCt | AAt | 1 | 1 | 1 | 2996-2998 |
ORF1ab/nsp3 | 93 | S93L | S911L | nonsyn | TCT | CTG | 1 | 1 | 1 | 2996-2998 |
ORF1ab/nsp3 | 93 | S93V | S911V | nonsyn | TCt | GTt | 1 | 1 | 1 | 2996-2998 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 1668 | 1669 | All | 0.000319 |
ORF1ab/nsp3 | 93 | S93F | tCT | tTC | 1 | 1669 | All | 0 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcC | 334 | 477 | All | 0.000064 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcG | 86 | 477 | All | 0.000016 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcA | 57 | 477 | All | 0.000011 |
ORF1ab/nsp3 | 93 | S93A | Tct | Gct | 385 | 385 | All | 0.000074 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 326 | 326 | B.1.351 | 0.009691 |
ORF1ab/nsp3 | 93 | S93A | Tct | Gct | 264 | 264 | B.1.429 | 0.006212 |
ORF1ab/nsp3 | 93 | S93Y | tCt | tAt | 210 | 210 | All | 0.00004 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 209 | 209 | B.1.1.348 | 0.166401 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 169 | 169 | B.1.1.7 | 0.000151 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 162 | 162 | AY.39 | 0.004003 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 139 | 139 | B.1.617.2 | 0.000523 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcC | 123 | 123 | AY.44 | 0.000749 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 88 | 88 | B.1.427 | 0.004444 |
ORF1ab/nsp3 | 93 | S93Y | tCt | tAt | 85 | 85 | AY.36 | 0.012598 |
ORF1ab/nsp3 | 93 | S93A | Tct | Gct | 84 | 84 | AY.25 | 0.000505 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 80 | 80 | AY.100 | 0.003681 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcG | 60 | 60 | AY.99.2 | 0.005529 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 56 | 56 | AY.103 | 0.000348 |
ORF1ab/nsp3 | 93 | S93Y | tCt | tAt | 52 | 52 | B.1.1.7 | 0.000047 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 42 | 42 | AY.4 | 0.000065 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 42 | 42 | B.1 | 0.000385 |
ORF1ab/nsp3 | 93 | S93P | Tct | Cct | 36 | 40 | All | 0.000007 |
ORF1ab/nsp3 | 93 | S93P | TcT | CcA | 2 | 40 | All | 0 |
ORF1ab/nsp3 | 93 | S93P | TcT | CcG | 2 | 40 | All | 0 |
ORF1ab/nsp3 | 93 | S93del | TCT | --- | 39 | 39 | All | 0.000007 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcC | 36 | 38 | B.1.617.2 | 0.000136 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcA | 2 | 38 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcC | 22 | 32 | B.1.1.7 | 0.00002 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcA | 9 | 32 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcG | 1 | 32 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 27 | 27 | AC.1 | 1 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcC | 20 | 21 | AY.39 | 0.000494 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcA | 1 | 21 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 21 | 21 | B.1.177.7 | 0.003462 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcC | 12 | 20 | AY.4 | 0.000019 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcA | 8 | 20 | AY.4 | 0.000012 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 20 | 20 | B.1.2 | 0.000176 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcC | 14 | 17 | B.1 | 0.000128 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcA | 2 | 17 | B.1 | 0.000018 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcG | 1 | 17 | B.1 | 0.000009 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcA | 9 | 16 | B.1.2 | 0.000079 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcC | 6 | 16 | B.1.2 | 0.000053 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcG | 1 | 16 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 15 | 15 | B.1.1 | 0.000272 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 15 | 15 | B.1.243 | 0.001044 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcC | 14 | 14 | AY.3 | 0.000139 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcA | 8 | 14 | AY.71 | 0.0038 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcC | 6 | 14 | AY.71 | 0.00285 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcG | 11 | 14 | B.1.1.519 | 0.000437 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcA | 3 | 14 | B.1.1.519 | 0.000119 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 13 | 13 | AY.25 | 0.000078 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcC | 12 | 12 | AY.20 | 0.000466 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 11 | 12 | AY.43 | 0.000049 |
ORF1ab/nsp3 | 93 | S93F | tCT | tTC | 1 | 12 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcC | 12 | 12 | AY.54 | 0.001144 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 12 | 12 | B.1.258 | 0.000799 |
ORF1ab/nsp3 | 93 | S93Y | tCt | tAt | 10 | 10 | AY.103 | 0.000062 |
ORF1ab/nsp3 | 93 | S93P | Tct | Cct | 10 | 10 | AY.7 | 0.00196 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 9 | 9 | AY.29 | 0.000142 |
ORF1ab/nsp3 | 93 | S93Y | tCt | tAt | 9 | 9 | AY.3 | 0.00009 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 9 | 9 | B.1.1.405 | 0.75 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 9 | 9 | B.1.177 | 0.000119 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 9 | 9 | P.1 | 0.000142 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 8 | 8 | AY.109 | 0.005917 |
ORF1ab/nsp3 | 93 | S93P | Tct | Cct | 8 | 8 | AY.4 | 0.000012 |
ORF1ab/nsp3 | 93 | S93A | Tct | Gct | 8 | 8 | B.1 | 0.000073 |
ORF1ab/nsp3 | 93 | S93A | Tct | Gct | 8 | 8 | B.1.2 | 0.00007 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 8 | 8 | B.1.526 | 0.000188 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 7 | 7 | AY.3 | 0.00007 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 7 | 7 | AY.7.2 | 0.003915 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 6 | 6 | B.1.177.4 | 0.001266 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcC | 6 | 6 | B.1.284 | 0.078947 |
ORF1ab/nsp3 | 93 | S93Y | tCt | tAt | 6 | 6 | B.1.621 | 0.000531 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 6 | 6 | P.1.14 | 0.000287 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcC | 4 | 5 | AY.25 | 0.000024 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcA | 1 | 5 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcG | 5 | 5 | AY.98.1 | 0.000242 |
ORF1ab/nsp3 | 93 | S93del | TCT | --- | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 5 | 5 | B.1.160 | 0.000156 |
ORF1ab/nsp3 | 93 | S93Y | tCt | tAt | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 93 | S93P | TcT | CcA | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 93 | S93P | TcT | CcG | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 93 | S93S | tcT | tcG | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 93 | S93S | tcT | tcA | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 4 | 4 | AY.117 | 0.000338 |
ORF1ab/nsp3 | 93 | S93A | Tct | Gct | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcC | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp3 | 93 | S93del | TCT | --- | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcC | 4 | 4 | B.1.1.222 | 0.000816 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 4 | 4 | B.1.1.417 | 0.010811 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcC | 4 | 4 | B.1.221 | 0.000284 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 4 | 4 | C.34 | 0.148148 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 3 | 3 | 0.166667 | |
ORF1ab/nsp3 | 93 | S93S | tcT | tcC | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcC | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp3 | 93 | S93Y | tCt | tAt | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcC | 3 | 3 | AY.9.1 | 0.000251 |
ORF1ab/nsp3 | 93 | S93Y | tCt | tAt | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 93 | S93Y | tCt | tAt | 3 | 3 | B.1.1.176 | 0.001318 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 3 | 3 | B.1.1.214 | 0.000166 |
ORF1ab/nsp3 | 93 | S93del | TCT | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcC | 2 | 3 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcA | 1 | 3 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 3 | 3 | B.1.36.7 | 0.012 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 3 | 3 | B.1.575 | 0.00091 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcC | 3 | 3 | B.1.621.1 | 0.001517 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcG | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp3 | 93 | S93Y | tCt | tAt | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 3 | 3 | P.4 | 0.011407 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp3 | 93 | S93del | TCT | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp3 | 93 | S93C | tCt | tGt | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 93 | S93T | Tct | Act | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 93 | S93del2 | TCT | --N | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 93 | S93del2 | TCt | --t | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 93 | S93del1 | tCt | t-t | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 93 | S93del1 | tcT | tc- | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 93 | S93Y | tCt | tAt | 2 | 2 | AY.108 | 0.002205 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 93 | S93Y | tCt | tAt | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 93 | S93P | Tct | Cct | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 93 | S93Y | tCt | tAt | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 93 | S93A | Tct | Gct | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp3 | 93 | S93Y | tCt | tAt | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 93 | S93del | TCT | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcC | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcC | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp3 | 93 | S93Y | tCt | tAt | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 2 | 2 | AY.7 | 0.000392 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp3 | 93 | S93Y | tCt | tAt | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcA | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcC | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp3 | 93 | S93del | TCT | --- | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 93 | S93A | Tct | Gct | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 93 | S93P | Tct | Cct | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcC | 2 | 2 | B.1.232 | 0.001075 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 93 | S93P | Tct | Cct | 2 | 2 | B.1.469 | 0.00722 |
ORF1ab/nsp3 | 93 | S93Y | tCt | tAt | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcC | 2 | 2 | B.1.564 | 0.000852 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 2 | 2 | B.1.588 | 0.00182 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp3 | 93 | S93del | TCT | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp3 | 93 | S93del | TCT | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp3 | 93 | S93del | TCT | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp3 | 93 | S93V | TCt | GTt | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 93 | S93A | Tct | Gct | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 93 | S93A | Tct | Gct | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 93 | S93Y | tCt | tAt | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcC | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 93 | S93N | TCt | AAt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 93 | S93D | TCt | GAt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 93 | S93L | TCT | CTG | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 93 | S93V | TCt | GTt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 93 | S93del | TCT | --- | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 93 | S93Y | tCt | tAt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 93 | S93P | Tct | Cct | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcA | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 93 | S93L | TCT | CTG | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcC | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 93 | S93A | Tct | Gct | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 93 | S93Y | tCt | tAt | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 93 | S93A | Tct | Gct | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 93 | S93del | TCT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 93 | S93P | Tct | Cct | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 93 | S93A | Tct | Gct | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 93 | S93P | Tct | Cct | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 93 | S93del | TCT | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 93 | S93P | Tct | Cct | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcC | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcC | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 93 | S93Y | tCt | tAt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 93 | S93del | TCT | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 93 | S93A | Tct | Gct | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 93 | S93Y | tCt | tAt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 93 | S93A | Tct | Gct | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 93 | S93P | Tct | Cct | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 93 | S93del | TCT | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcA | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 93 | S93A | Tct | Gct | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcA | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 93 | S93Y | tCt | tAt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 93 | S93P | Tct | Cct | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 93 | S93T | Tct | Act | 1 | 1 | AY.5.2 | 0.002463 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 93 | S93P | Tct | Cct | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcC | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 93 | S93Y | tCt | tAt | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 93 | S93Y | tCt | tAt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcC | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 93 | S93C | tCt | tGt | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 93 | S93del2 | TCT | --N | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 93 | S93P | Tct | Cct | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 93 | S93D | TCt | GAt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 93 | S93N | TCt | AAt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 93 | S93del | TCT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 93 | S93P | Tct | Cct | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 93 | S93Y | tCt | tAt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcC | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcA | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp3 | 93 | S93T | Tct | Act | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 93 | S93A | Tct | Gct | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 93 | S93del2 | TCt | --t | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp3 | 93 | S93A | Tct | Gct | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcA | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 93 | S93del1 | tCt | t-t | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 93 | S93del | TCT | --- | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 1 | 1 | B.1.160.28 | 0.002924 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp3 | 93 | S93Y | tCt | tAt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 93 | S93Y | tCt | tAt | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp3 | 93 | S93del | TCT | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcA | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 93 | S93A | Tct | Gct | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp3 | 93 | S93Y | tCt | tAt | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 93 | S93del | TCT | --- | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 93 | S93del | TCT | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 93 | S93Y | tCt | tAt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcA | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcC | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 93 | S93Y | tCt | tAt | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp3 | 93 | S93del | TCT | --- | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcA | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcG | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 1 | 1 | B.1.36.26 | 0.002857 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcG | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcC | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 93 | S93P | Tct | Cct | 1 | 1 | B.1.377 | 0.004566 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcA | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 93 | S93del | TCT | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 93 | S93A | Tct | Gct | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 93 | S93del | TCT | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcC | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 93 | S93Y | tCt | tAt | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcA | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 93 | S93del | TCT | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 1 | 1 | B.1.571 | 0.009709 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcC | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 93 | S93del | TCT | --- | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 93 | S93del1 | tcT | tc- | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 93 | S93C | tCt | tGt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 93 | S93P | Tct | Cct | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 93 | S93S | tcT | tcC | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 1 | 1 | B.1.9 | 0.006173 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 1 | 1 | C.1.2 | 0.004255 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 1 | 1 | C.11 | 0.010638 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp3 | 93 | S93P | Tct | Cct | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 93 | S93Y | tCt | tAt | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 93 | S93Y | tCt | tAt | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 93 | S93A | Tct | Gct | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 93 | S93F | tCt | tTt | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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