CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 93

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp393S93FS911FnonsyntCttTt166916680.9994012996-2998
ORF1ab/nsp393S93FS911FnonsyntCTtTC166910.0005991612996-2998
ORF1ab/nsp393S93SS911SsyntcTtcC4773340.700212996-2998
ORF1ab/nsp393S93SS911SsyntcTtcG477860.1802942996-2998
ORF1ab/nsp393S93SS911SsyntcTtcA477570.1194972996-2998
ORF1ab/nsp393S93AS911AnonsynTctGct38538512996-2998
ORF1ab/nsp393S93YS911YnonsyntCttAt21021012996-2998
ORF1ab/nsp393S93PS911PnonsynTctCct40360.92996-2998
ORF1ab/nsp393S93PS911PnonsynTcTCcG4020.052996-2998
ORF1ab/nsp393S93PS911PnonsynTcTCcA4020.052996-2998
ORF1ab/nsp393S93delS911deldelTCT---393912996-2998
ORF1ab/nsp393S93TS911TnonsynTctAct2212996-2998
ORF1ab/nsp393S93CS911CnonsyntCttGt2212996-2998
ORF1ab/nsp393S93del1S911del1deltCtt-t210.52996-2998
ORF1ab/nsp393S93del2S911del2delTCt--t210.52996-2998
ORF1ab/nsp393S93del1S911del1deltcTtc-210.52996-2998
ORF1ab/nsp393S93del2S911del2delTCT--N210.52996-2998
ORF1ab/nsp393S93DS911DnonsynTCtGAt1112996-2998
ORF1ab/nsp393S93NS911NnonsynTCtAAt1112996-2998
ORF1ab/nsp393S93LS911LnonsynTCTCTG1112996-2998
ORF1ab/nsp393S93VS911VnonsynTCtGTt1112996-2998

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp393S93FtCttTt16681669All0.000319
ORF1ab/nsp393S93FtCTtTC11669All0
ORF1ab/nsp393S93StcTtcC334477All0.000064
ORF1ab/nsp393S93StcTtcG86477All0.000016
ORF1ab/nsp393S93StcTtcA57477All0.000011
ORF1ab/nsp393S93ATctGct385385All0.000074
ORF1ab/nsp393S93FtCttTt326326B.1.3510.009691
ORF1ab/nsp393S93ATctGct264264B.1.4290.006212
ORF1ab/nsp393S93YtCttAt210210All0.00004
ORF1ab/nsp393S93FtCttTt209209B.1.1.3480.166401
ORF1ab/nsp393S93FtCttTt169169B.1.1.70.000151
ORF1ab/nsp393S93FtCttTt162162AY.390.004003
ORF1ab/nsp393S93FtCttTt139139B.1.617.20.000523
ORF1ab/nsp393S93StcTtcC123123AY.440.000749
ORF1ab/nsp393S93FtCttTt8888B.1.4270.004444
ORF1ab/nsp393S93YtCttAt8585AY.360.012598
ORF1ab/nsp393S93ATctGct8484AY.250.000505
ORF1ab/nsp393S93FtCttTt8080AY.1000.003681
ORF1ab/nsp393S93StcTtcG6060AY.99.20.005529
ORF1ab/nsp393S93FtCttTt5656AY.1030.000348
ORF1ab/nsp393S93YtCttAt5252B.1.1.70.000047
ORF1ab/nsp393S93FtCttTt4242AY.40.000065
ORF1ab/nsp393S93FtCttTt4242B.10.000385
ORF1ab/nsp393S93PTctCct3640All0.000007
ORF1ab/nsp393S93PTcTCcA240All0
ORF1ab/nsp393S93PTcTCcG240All0
ORF1ab/nsp393S93delTCT---3939All0.000007
ORF1ab/nsp393S93StcTtcC3638B.1.617.20.000136
ORF1ab/nsp393S93StcTtcA238B.1.617.20.000008
ORF1ab/nsp393S93StcTtcC2232B.1.1.70.00002
ORF1ab/nsp393S93StcTtcA932B.1.1.70.000008
ORF1ab/nsp393S93StcTtcG132B.1.1.70.000001
ORF1ab/nsp393S93FtCttTt2727AC.11
ORF1ab/nsp393S93StcTtcC2021AY.390.000494
ORF1ab/nsp393S93StcTtcA121AY.390.000025
ORF1ab/nsp393S93FtCttTt2121B.1.177.70.003462
ORF1ab/nsp393S93StcTtcC1220AY.40.000019
ORF1ab/nsp393S93StcTtcA820AY.40.000012
ORF1ab/nsp393S93FtCttTt2020B.1.20.000176
ORF1ab/nsp393S93StcTtcC1417B.10.000128
ORF1ab/nsp393S93StcTtcA217B.10.000018
ORF1ab/nsp393S93StcTtcG117B.10.000009
ORF1ab/nsp393S93StcTtcA916B.1.20.000079
ORF1ab/nsp393S93StcTtcC616B.1.20.000053
ORF1ab/nsp393S93StcTtcG116B.1.20.000009
ORF1ab/nsp393S93FtCttTt1515B.1.10.000272
ORF1ab/nsp393S93FtCttTt1515B.1.2430.001044
ORF1ab/nsp393S93StcTtcC1414AY.30.000139
ORF1ab/nsp393S93StcTtcA814AY.710.0038
ORF1ab/nsp393S93StcTtcC614AY.710.00285
ORF1ab/nsp393S93StcTtcG1114B.1.1.5190.000437
ORF1ab/nsp393S93StcTtcA314B.1.1.5190.000119
ORF1ab/nsp393S93FtCttTt1313AY.250.000078
ORF1ab/nsp393S93StcTtcC1212AY.200.000466
ORF1ab/nsp393S93FtCttTt1112AY.430.000049
ORF1ab/nsp393S93FtCTtTC112AY.430.000004
ORF1ab/nsp393S93StcTtcC1212AY.540.001144
ORF1ab/nsp393S93FtCttTt1212B.1.2580.000799
ORF1ab/nsp393S93YtCttAt1010AY.1030.000062
ORF1ab/nsp393S93PTctCct1010AY.70.00196
ORF1ab/nsp393S93FtCttTt99AY.290.000142
ORF1ab/nsp393S93YtCttAt99AY.30.00009
ORF1ab/nsp393S93FtCttTt99B.1.1.4050.75
ORF1ab/nsp393S93FtCttTt99B.1.1770.000119
ORF1ab/nsp393S93FtCttTt99P.10.000142
ORF1ab/nsp393S93FtCttTt88AY.1090.005917
ORF1ab/nsp393S93PTctCct88AY.40.000012
ORF1ab/nsp393S93ATctGct88B.10.000073
ORF1ab/nsp393S93ATctGct88B.1.20.00007
ORF1ab/nsp393S93FtCttTt88B.1.5260.000188
ORF1ab/nsp393S93FtCttTt77AY.1020.000186
ORF1ab/nsp393S93FtCttTt77AY.30.00007
ORF1ab/nsp393S93FtCttTt77AY.440.000043
ORF1ab/nsp393S93FtCttTt77AY.7.20.003915
ORF1ab/nsp393S93FtCttTt66B.1.177.40.001266
ORF1ab/nsp393S93StcTtcC66B.1.2840.078947
ORF1ab/nsp393S93YtCttAt66B.1.6210.000531
ORF1ab/nsp393S93FtCttTt66P.1.140.000287
ORF1ab/nsp393S93StcTtcC45AY.250.000024
ORF1ab/nsp393S93StcTtcA15AY.250.000006
ORF1ab/nsp393S93StcTtcG55AY.98.10.000242
ORF1ab/nsp393S93delTCT---55B.1.1.70.000004
ORF1ab/nsp393S93FtCttTt55B.1.1600.000156
ORF1ab/nsp393S93YtCttAt55B.1.617.20.000019
ORF1ab/nsp393S93PTcTCcA240.111111
ORF1ab/nsp393S93PTcTCcG240.111111
ORF1ab/nsp393S93StcTtcG240.111111
ORF1ab/nsp393S93StcTtcA240.111111
ORF1ab/nsp393S93FtCttTt44AY.1170.000338
ORF1ab/nsp393S93ATctGct44AY.40.000006
ORF1ab/nsp393S93StcTtcC44AY.430.000018
ORF1ab/nsp393S93delTCT---44B.10.000037
ORF1ab/nsp393S93StcTtcC44B.1.1.2220.000816
ORF1ab/nsp393S93FtCttTt44B.1.1.4170.010811
ORF1ab/nsp393S93StcTtcC44B.1.2210.000284
ORF1ab/nsp393S93FtCttTt44C.340.148148
ORF1ab/nsp393S93FtCttTt330.166667
ORF1ab/nsp393S93StcTtcC33AY.1030.000019
ORF1ab/nsp393S93FtCttTt33AY.1210.000406
ORF1ab/nsp393S93StcTtcC33AY.290.000047
ORF1ab/nsp393S93FtCttTt33AY.4.20.000065
ORF1ab/nsp393S93YtCttAt33AY.440.000018
ORF1ab/nsp393S93FtCttTt33AY.450.000365
ORF1ab/nsp393S93FtCttTt33AY.740.000347
ORF1ab/nsp393S93StcTtcC33AY.9.10.000251
ORF1ab/nsp393S93YtCttAt33B.10.000027
ORF1ab/nsp393S93YtCttAt33B.1.1.1760.001318
ORF1ab/nsp393S93FtCttTt33B.1.1.2140.000166
ORF1ab/nsp393S93delTCT---33B.1.1.330.001263
ORF1ab/nsp393S93StcTtcC23B.1.3510.000059
ORF1ab/nsp393S93StcTtcA13B.1.3510.00003
ORF1ab/nsp393S93FtCttTt33B.1.36.70.012
ORF1ab/nsp393S93FtCttTt33B.1.5250.000339
ORF1ab/nsp393S93FtCttTt33B.1.5750.00091
ORF1ab/nsp393S93StcTtcC33B.1.621.10.001517
ORF1ab/nsp393S93StcTtcG33C.370.000348
ORF1ab/nsp393S93YtCttAt33C.370.000348
ORF1ab/nsp393S93FtCttTt33P.40.011407
ORF1ab/nsp393S93FtCttTt33R.10.00027
ORF1ab/nsp393S93delTCT---220.111111
ORF1ab/nsp393S93FtCttTt22A.2.50.000998
ORF1ab/nsp393S93CtCttGt22All0
ORF1ab/nsp393S93TTctAct22All0
ORF1ab/nsp393S93del2TCT--N12All0
ORF1ab/nsp393S93del2TCt--t12All0
ORF1ab/nsp393S93del1tCtt-t12All0
ORF1ab/nsp393S93del1tcTtc-12All0
ORF1ab/nsp393S93YtCttAt22AY.1080.002205
ORF1ab/nsp393S93FtCttTt22AY.1180.000125
ORF1ab/nsp393S93YtCttAt22AY.1190.000071
ORF1ab/nsp393S93FtCttTt22AY.1190.000071
ORF1ab/nsp393S93PTctCct22AY.250.000012
ORF1ab/nsp393S93FtCttTt22AY.260.000057
ORF1ab/nsp393S93YtCttAt22AY.290.000032
ORF1ab/nsp393S93ATctGct22AY.30.00002
ORF1ab/nsp393S93FtCttTt22AY.3.10.000171
ORF1ab/nsp393S93FtCttTt22AY.330.000134
ORF1ab/nsp393S93YtCttAt22AY.40.000003
ORF1ab/nsp393S93FtCttTt22AY.420.00008
ORF1ab/nsp393S93delTCT---22AY.430.000009
ORF1ab/nsp393S93StcTtcC22AY.450.000243
ORF1ab/nsp393S93StcTtcC22AY.470.000062
ORF1ab/nsp393S93FtCttTt22AY.50.000041
ORF1ab/nsp393S93FtCttTt22AY.60.000082
ORF1ab/nsp393S93YtCttAt22AY.610.00021
ORF1ab/nsp393S93FtCttTt22AY.70.000392
ORF1ab/nsp393S93FtCttTt22AY.850.000854
ORF1ab/nsp393S93YtCttAt22B.1.10.000036
ORF1ab/nsp393S93StcTtcA12B.1.10.000018
ORF1ab/nsp393S93StcTtcC12B.1.10.000018
ORF1ab/nsp393S93FtCttTt22B.1.1.3060.000877
ORF1ab/nsp393S93delTCT---22B.1.1.3480.001592
ORF1ab/nsp393S93FtCttTt22B.1.1.5190.000079
ORF1ab/nsp393S93ATctGct22B.1.1.5190.000079
ORF1ab/nsp393S93PTctCct22B.1.1.70.000002
ORF1ab/nsp393S93StcTtcC22B.1.2320.001075
ORF1ab/nsp393S93FtCttTt22B.1.4290.000047
ORF1ab/nsp393S93PTctCct22B.1.4690.00722
ORF1ab/nsp393S93YtCttAt22B.1.5610.000794
ORF1ab/nsp393S93StcTtcC22B.1.5640.000852
ORF1ab/nsp393S93FtCttTt22B.1.5880.00182
ORF1ab/nsp393S93FtCttTt22B.1.5950.000522
ORF1ab/nsp393S93FtCttTt22B.1.617.10.000258
ORF1ab/nsp393S93delTCT---22B.1.617.20.000008
ORF1ab/nsp393S93FtCttTt22C.370.000232
ORF1ab/nsp393S93delTCT---22N.60.014184
ORF1ab/nsp393S93delTCT---22P.10.000032
ORF1ab/nsp393S93FtCttTt22P.1.150.000465
ORF1ab/nsp393S93VTCtGTt110.055556
ORF1ab/nsp393S93ATctGct110.055556
ORF1ab/nsp393S93ATctGct11A.20.000662
ORF1ab/nsp393S93YtCttAt11A.20.000662
ORF1ab/nsp393S93StcTtcC11AD.20.000219
ORF1ab/nsp393S93NTCtAAt11All0
ORF1ab/nsp393S93DTCtGAt11All0
ORF1ab/nsp393S93LTCTCTG11All0
ORF1ab/nsp393S93VTCtGTt11All0
ORF1ab/nsp393S93FtCttTt11AY.10.000396
ORF1ab/nsp393S93delTCT---11AY.1000.000046
ORF1ab/nsp393S93YtCttAt11AY.1000.000046
ORF1ab/nsp393S93PTctCct11AY.1000.000046
ORF1ab/nsp393S93StcTtcA11AY.1020.000027
ORF1ab/nsp393S93FtCttTt11AY.1060.000335
ORF1ab/nsp393S93FtCttTt11AY.1110.000183
ORF1ab/nsp393S93FtCttTt11AY.1130.000142
ORF1ab/nsp393S93LTCTCTG11AY.1130.000142
ORF1ab/nsp393S93StcTtcC11AY.1160.000287
ORF1ab/nsp393S93FtCttTt11AY.1160.000287
ORF1ab/nsp393S93FtCttTt11AY.1200.000037
ORF1ab/nsp393S93ATctGct11AY.1200.000037
ORF1ab/nsp393S93YtCttAt11AY.140.000088
ORF1ab/nsp393S93FtCttTt11AY.140.000088
ORF1ab/nsp393S93FtCttTt11AY.200.000039
ORF1ab/nsp393S93ATctGct11AY.240.000431
ORF1ab/nsp393S93delTCT---11AY.250.000006
ORF1ab/nsp393S93PTctCct11AY.270.000065
ORF1ab/nsp393S93ATctGct11AY.290.000016
ORF1ab/nsp393S93PTctCct11AY.30.00001
ORF1ab/nsp393S93delTCT---11AY.30.00001
ORF1ab/nsp393S93PTctCct11AY.390.000025
ORF1ab/nsp393S93FtCttTt11AY.39.10.00004
ORF1ab/nsp393S93StcTtcC11AY.39.10.00004
ORF1ab/nsp393S93StcTtcC11AY.4.20.000022
ORF1ab/nsp393S93YtCttAt11AY.4.2.10.000149
ORF1ab/nsp393S93delTCT---11AY.420.00004
ORF1ab/nsp393S93ATctGct11AY.430.000004
ORF1ab/nsp393S93YtCttAt11AY.430.000004
ORF1ab/nsp393S93ATctGct11AY.440.000006
ORF1ab/nsp393S93PTctCct11AY.440.000006
ORF1ab/nsp393S93FtCttTt11AY.460.000104
ORF1ab/nsp393S93delTCT---11AY.460.000104
ORF1ab/nsp393S93FtCttTt11AY.46.20.000635
ORF1ab/nsp393S93StcTtcA11AY.46.50.000198
ORF1ab/nsp393S93FtCttTt11AY.470.000031
ORF1ab/nsp393S93ATctGct11AY.50.000021
ORF1ab/nsp393S93StcTtcA11AY.50.000021
ORF1ab/nsp393S93YtCttAt11AY.50.000021
ORF1ab/nsp393S93PTctCct11AY.50.000021
ORF1ab/nsp393S93TTctAct11AY.5.20.002463
ORF1ab/nsp393S93FtCttTt11AY.5.40.000277
ORF1ab/nsp393S93PTctCct11AY.540.000095
ORF1ab/nsp393S93FtCttTt11AY.670.000464
ORF1ab/nsp393S93StcTtcC11AY.670.000464
ORF1ab/nsp393S93FtCttTt11AY.750.000056
ORF1ab/nsp393S93FtCttTt11AY.80.000606
ORF1ab/nsp393S93FtCttTt11AY.840.000437
ORF1ab/nsp393S93YtCttAt11AY.840.000437
ORF1ab/nsp393S93FtCttTt11AY.9.10.000084
ORF1ab/nsp393S93YtCttAt11AY.9.20.000037
ORF1ab/nsp393S93StcTtcC11AY.980.000079
ORF1ab/nsp393S93CtCttGt11AY.990.001049
ORF1ab/nsp393S93del2TCT--N11AZ.20.000821
ORF1ab/nsp393S93PTctCct11B.10.000009
ORF1ab/nsp393S93DTCtGAt11B.1.10.000018
ORF1ab/nsp393S93NTCtAAt11B.1.10.000018
ORF1ab/nsp393S93delTCT---11B.1.10.000018
ORF1ab/nsp393S93PTctCct11B.1.10.000018
ORF1ab/nsp393S93YtCttAt11B.1.1.10.000327
ORF1ab/nsp393S93FtCttTt11B.1.1.280.000311
ORF1ab/nsp393S93StcTtcC11B.1.1.280.000311
ORF1ab/nsp393S93FtCttTt11B.1.1.3170.000412
ORF1ab/nsp393S93FtCttTt11B.1.1.3690.000446
ORF1ab/nsp393S93StcTtcA11B.1.1.4200.001006
ORF1ab/nsp393S93TTctAct11B.1.1.70.000001
ORF1ab/nsp393S93ATctGct11B.1.1.70.000001
ORF1ab/nsp393S93del2TCt--t11B.1.1.70.000001
ORF1ab/nsp393S93FtCttTt11B.1.1260.001276
ORF1ab/nsp393S93ATctGct11B.1.1600.000031
ORF1ab/nsp393S93StcTtcA11B.1.1600.000031
ORF1ab/nsp393S93del1tCtt-t11B.1.1600.000031
ORF1ab/nsp393S93delTCT---11B.1.160.160.000929
ORF1ab/nsp393S93FtCttTt11B.1.160.280.002924
ORF1ab/nsp393S93FtCttTt11B.1.1700.00431
ORF1ab/nsp393S93YtCttAt11B.1.1770.000013
ORF1ab/nsp393S93YtCttAt11B.1.177.100.000878
ORF1ab/nsp393S93delTCT---11B.1.177.540.000606
ORF1ab/nsp393S93StcTtcA11B.1.177.540.000606
ORF1ab/nsp393S93ATctGct11B.1.177.560.000668
ORF1ab/nsp393S93FtCttTt11B.1.177.580.001332
ORF1ab/nsp393S93FtCttTt11B.1.177.770.000726
ORF1ab/nsp393S93YtCttAt11B.1.177.860.000183
ORF1ab/nsp393S93delTCT---11B.1.177.860.000183
ORF1ab/nsp393S93delTCT---11B.1.20.000009
ORF1ab/nsp393S93YtCttAt11B.1.20.000009
ORF1ab/nsp393S93FtCttTt11B.1.2220.001692
ORF1ab/nsp393S93StcTtcA11B.1.2340.000132
ORF1ab/nsp393S93StcTtcC11B.1.258.170.000104
ORF1ab/nsp393S93FtCttTt11B.1.258.170.000104
ORF1ab/nsp393S93YtCttAt11B.1.2790.000514
ORF1ab/nsp393S93delTCT---11B.1.3490.000715
ORF1ab/nsp393S93StcTtcA11B.1.351.20.000303
ORF1ab/nsp393S93StcTtcG11B.1.360.000146
ORF1ab/nsp393S93FtCttTt11B.1.360.000146
ORF1ab/nsp393S93FtCttTt11B.1.36.260.002857
ORF1ab/nsp393S93StcTtcG11B.1.36.290.000517
ORF1ab/nsp393S93StcTtcC11B.1.3690.000285
ORF1ab/nsp393S93PTctCct11B.1.3770.004566
ORF1ab/nsp393S93StcTtcA11B.1.4160.001269
ORF1ab/nsp393S93delTCT---11B.1.416.10.001563
ORF1ab/nsp393S93FtCttTt11B.1.416.10.001563
ORF1ab/nsp393S93ATctGct11B.1.4270.00005
ORF1ab/nsp393S93delTCT---11B.1.4290.000024
ORF1ab/nsp393S93StcTtcC11B.1.4290.000024
ORF1ab/nsp393S93YtCttAt11B.1.4560.003268
ORF1ab/nsp393S93StcTtcA11B.1.466.20.000391
ORF1ab/nsp393S93delTCT---11B.1.5610.000397
ORF1ab/nsp393S93FtCttTt11B.1.5710.009709
ORF1ab/nsp393S93StcTtcC11B.1.5770.000687
ORF1ab/nsp393S93delTCT---11B.1.5770.000687
ORF1ab/nsp393S93del1tcTtc-11B.1.5820.000491
ORF1ab/nsp393S93FtCttTt11B.1.5960.000087
ORF1ab/nsp393S93CtCttGt11B.1.617.20.000004
ORF1ab/nsp393S93PTctCct11B.1.617.20.000004
ORF1ab/nsp393S93StcTtcC11B.1.617.30.002985
ORF1ab/nsp393S93FtCttTt11B.1.90.006173
ORF1ab/nsp393S93FtCttTt11C.1.20.004255
ORF1ab/nsp393S93FtCttTt11C.110.010638
ORF1ab/nsp393S93FtCttTt11C.360.000911
ORF1ab/nsp393S93FtCttTt11C.36.30.000567
ORF1ab/nsp393S93PTctCct11P.10.000016
ORF1ab/nsp393S93FtCttTt11P.1.10.000318
ORF1ab/nsp393S93YtCttAt11P.1.120.000484
ORF1ab/nsp393S93YtCttAt11P.1.150.000232
ORF1ab/nsp393S93FtCttTt11P.20.000187
ORF1ab/nsp393S93ATctGct11Q.80.000165
ORF1ab/nsp393S93FtCttTt11Q.80.000165