CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 926 | C926C | C1744C | syn | tgC | tgT | 19501 | 19501 | 1 | 5495-5497 |
ORF1ab/nsp3 | 926 | C926Y | C1744Y | nonsyn | tGc | tAc | 405 | 405 | 1 | 5495-5497 |
ORF1ab/nsp3 | 926 | C926F | C1744F | nonsyn | tGc | tTc | 238 | 238 | 1 | 5495-5497 |
ORF1ab/nsp3 | 926 | C926S | C1744S | nonsyn | Tgc | Agc | 62 | 57 | 0.919355 | 5495-5497 |
ORF1ab/nsp3 | 926 | C926S | C1744S | nonsyn | tGc | tCc | 62 | 4 | 0.0645161 | 5495-5497 |
ORF1ab/nsp3 | 926 | C926S | C1744S | nonsyn | tGC | tCA | 62 | 1 | 0.016129 | 5495-5497 |
ORF1ab/nsp3 | 926 | C926del | C1744del | del | TGC | --- | 29 | 29 | 1 | 5495-5497 |
ORF1ab/nsp3 | 926 | C926X | C1744X | nonsyn | tgC | tgA | 12 | 12 | 1 | 5495-5497 |
ORF1ab/nsp3 | 926 | C926R | C1744R | nonsyn | Tgc | Cgc | 7 | 7 | 1 | 5495-5497 |
ORF1ab/nsp3 | 926 | C926W | C1744W | nonsyn | tgC | tgG | 4 | 4 | 1 | 5495-5497 |
ORF1ab/nsp3 | 926 | C926G | C1744G | nonsyn | TgC | GgT | 4 | 2 | 0.5 | 5495-5497 |
ORF1ab/nsp3 | 926 | C926G | C1744G | nonsyn | Tgc | Ggc | 4 | 2 | 0.5 | 5495-5497 |
ORF1ab/nsp3 | 926 | C926del1 | C1744del1 | del | tGc | t-c | 1 | 1 | 1 | 5495-5497 |
ORF1ab/nsp3 | 926 | C926P | C1744P | nonsyn | TGC | CCT | 1 | 1 | 1 | 5495-5497 |
ORF1ab/nsp3 | 926 | C926A | C1744A | nonsyn | TGC | GCA | 1 | 1 | 1 | 5495-5497 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 19501 | 19501 | All | 0.00373 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 3284 | 3284 | AY.23 | 0.229058 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2419 | 2419 | B.1.1.7 | 0.002166 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2393 | 2393 | AY.23.1 | 0.998748 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1922 | 1922 | AY.103 | 0.011934 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1881 | 1881 | B.1.2 | 0.016563 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1264 | 1264 | AY.57 | 0.829396 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 735 | 735 | AY.4.2.1 | 0.109505 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 599 | 599 | AY.43 | 0.002654 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 563 | 563 | AY.4 | 0.000876 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 516 | 516 | B.1.617.2 | 0.001943 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 484 | 484 | B.1.311 | 0.132894 |
ORF1ab/nsp3 | 926 | C926Y | tGc | tAc | 405 | 405 | All | 0.000077 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 242 | 242 | AY.26 | 0.006851 |
ORF1ab/nsp3 | 926 | C926F | tGc | tTc | 238 | 238 | All | 0.000046 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 205 | 205 | AY.3 | 0.002039 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 195 | 195 | B.1.349 | 0.139385 |
ORF1ab/nsp3 | 926 | C926Y | tGc | tAc | 182 | 182 | AY.36 | 0.026975 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 128 | 128 | B.1 | 0.001172 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 124 | 124 | AY.33 | 0.00828 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 122 | 122 | B.1.177 | 0.001606 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 107 | 107 | B.1.399 | 0.206963 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 106 | 106 | AY.98.1 | 0.005134 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 93 | 93 | B.1.1.377 | 0.128453 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 85 | 85 | B.1.637 | 0.006211 |
ORF1ab/nsp3 | 926 | C926F | tGc | tTc | 84 | 84 | AY.75 | 0.004706 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 82 | 82 | P.1.14 | 0.00392 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 79 | 79 | AY.44 | 0.000481 |
ORF1ab/nsp3 | 926 | C926F | tGc | tTc | 78 | 78 | AY.102 | 0.002068 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 78 | 78 | AY.54 | 0.007437 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 74 | 74 | AY.25 | 0.000445 |
ORF1ab/nsp3 | 926 | C926Y | tGc | tAc | 73 | 73 | B.1.221 | 0.005185 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 71 | 71 | P.1 | 0.001119 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 66 | 66 | AY.117 | 0.005578 |
ORF1ab/nsp3 | 926 | C926S | Tgc | Agc | 57 | 62 | All | 0.000011 |
ORF1ab/nsp3 | 926 | C926S | tGc | tCc | 4 | 62 | All | 0.000001 |
ORF1ab/nsp3 | 926 | C926S | tGC | tCA | 1 | 62 | All | 0 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 53 | 53 | B.1.596 | 0.004618 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 51 | 51 | B.1.160 | 0.001591 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 47 | 47 | B.1.1 | 0.000853 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 40 | 40 | AY.5 | 0.000826 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 39 | 39 | AY.20 | 0.001516 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 36 | 36 | AY.113 | 0.005126 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 34 | 34 | B.1.1.222 | 0.006936 |
ORF1ab/nsp3 | 926 | C926Y | tGc | tAc | 32 | 32 | AY.4 | 0.00005 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 31 | 31 | B.1.243 | 0.002157 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 30 | 30 | B.1.1.316 | 0.027752 |
ORF1ab/nsp3 | 926 | C926del | TGC | --- | 29 | 29 | All | 0.000006 |
ORF1ab/nsp3 | 926 | C926S | Tgc | Agc | 29 | 29 | B.1.351 | 0.000862 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 28 | 28 | B.1.1.519 | 0.001112 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 28 | 28 | B.1.438.1 | 0.003003 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 27 | 27 | AY.102 | 0.000716 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 26 | 26 | AY.85 | 0.011106 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 26 | 26 | B.1.526 | 0.000611 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 24 | 24 | AY.39 | 0.000593 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 24 | 24 | AY.4.2 | 0.000521 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 23 | 23 | AY.119 | 0.000812 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 23 | 23 | AY.29 | 0.000363 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 22 | 22 | B.1.351 | 0.000654 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 21 | 21 | AY.47 | 0.000653 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 21 | 21 | Q.1 | 0.002653 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 20 | 20 | AY.35 | 0.004661 |
ORF1ab/nsp3 | 926 | C926F | tGc | tTc | 20 | 20 | B.1.617.2 | 0.000075 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 19 | 19 | B.1.258 | 0.001264 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 18 | 18 | B.1.351.2 | 0.005446 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 17 | 17 | B.1.221 | 0.001208 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 16 | 16 | AY.120 | 0.000595 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 16 | 16 | AY.9 | 0.001082 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 16 | 16 | B.1.1.523 | 0.025 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 16 | 16 | B.1.427 | 0.000808 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 16 | 16 | B.1.429 | 0.000376 |
ORF1ab/nsp3 | 926 | C926Y | tGc | tAc | 15 | 15 | AY.43 | 0.000066 |
ORF1ab/nsp3 | 926 | C926Y | tGc | tAc | 15 | 15 | B.1.177.35 | 0.010366 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 15 | 15 | D.4 | 1 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 14 | 14 | AY.42 | 0.000563 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 13 | 13 | AY.98 | 0.001027 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 13 | 13 | B.1.177.86 | 0.002385 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 13 | 13 | B.1.36 | 0.001897 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 13 | 13 | B.1.527 | 0.048148 |
ORF1ab/nsp3 | 926 | C926Y | tGc | tAc | 13 | 13 | B.1.617.2 | 0.000049 |
ORF1ab/nsp3 | 926 | C926X | tgC | tgA | 12 | 12 | All | 0.000002 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 12 | 12 | AY.100 | 0.000552 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 12 | 12 | AY.39.1 | 0.000475 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 12 | 12 | B.1.1.294 | 0.01519 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 12 | 12 | B.1.177.35 | 0.008293 |
ORF1ab/nsp3 | 926 | C926Y | tGc | tAc | 11 | 11 | B.1.1.7 | 0.00001 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 10 | 10 | B.1.1.189 | 0.015129 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 9 | 9 | AY.13 | 0.001449 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 9 | 9 | AY.62 | 0.003922 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 9 | 9 | AY.99.2 | 0.000829 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 9 | 9 | B.1.1.265 | 0.028391 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 9 | 9 | B.1.525 | 0.001018 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 9 | 9 | B.1.575 | 0.002731 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 9 | 9 | C.36.3 | 0.005105 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 8 | 8 | AY.24 | 0.003448 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 8 | 8 | AY.3.1 | 0.000682 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 8 | 8 | AY.4.5 | 0.00086 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 8 | 8 | AY.60 | 0.007505 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 8 | 8 | AY.61 | 0.000838 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 8 | 8 | AY.7 | 0.001568 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 8 | 8 | B.1.1.33 | 0.003367 |
ORF1ab/nsp3 | 926 | C926del | TGC | --- | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 8 | 8 | B.1.234 | 0.001056 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 8 | 8 | B.1.621 | 0.000708 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 8 | 8 | Q.8 | 0.001319 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 7 | 7 | A.21 | 0.019391 |
ORF1ab/nsp3 | 926 | C926F | tGc | tTc | 7 | 7 | AD.2 | 0.001533 |
ORF1ab/nsp3 | 926 | C926R | Tgc | Cgc | 7 | 7 | All | 0.000001 |
ORF1ab/nsp3 | 926 | C926F | tGc | tTc | 7 | 7 | AY.118 | 0.000439 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 7 | 7 | AY.121 | 0.000947 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 7 | 7 | AY.36 | 0.001037 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 7 | 7 | AY.46 | 0.000729 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 7 | 7 | B.1.1.39 | 0.003568 |
ORF1ab/nsp3 | 926 | C926S | Tgc | Agc | 7 | 7 | B.1.177 | 0.000092 |
ORF1ab/nsp3 | 926 | C926Y | tGc | tAc | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 7 | 7 | B.1.362.2 | 0.033019 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 7 | 7 | B.1.617.1 | 0.000903 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 7 | 7 | C.37 | 0.000812 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 7 | 7 | P.2 | 0.001306 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 7 | 7 | R.1 | 0.00063 |
ORF1ab/nsp3 | 926 | C926F | tGc | tTc | 6 | 6 | 0.333333 | |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 6 | 6 | AY.16.1 | 0.00282 |
ORF1ab/nsp3 | 926 | C926S | Tgc | Agc | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp3 | 926 | C926F | tGc | tTc | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 6 | 6 | AY.58 | 0.005445 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 6 | 6 | AY.9.1 | 0.000502 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 6 | 6 | AY.9.2 | 0.00022 |
ORF1ab/nsp3 | 926 | C926Y | tGc | tAc | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp3 | 926 | C926Y | tGc | tAc | 6 | 6 | B.1.177.42 | 0.005367 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 6 | 6 | B.1.36.22 | 0.007246 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 6 | 6 | D.2 | 0.00045 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 5 | 5 | AY.34 | 0.000485 |
ORF1ab/nsp3 | 926 | C926F | tGc | tTc | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp3 | 926 | C926S | Tgc | Agc | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 5 | 5 | AY.46.6 | 0.000361 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 5 | 5 | AY.55 | 0.004587 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 5 | 5 | AY.68 | 0.001369 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 5 | 5 | AY.7.1 | 0.000564 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 5 | 5 | AY.75.1 | 0.000902 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 5 | 5 | AZ.2 | 0.004105 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 5 | 5 | B.1.1.128 | 0.035461 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 5 | 5 | B.1.1.317 | 0.002058 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 5 | 5 | B.1.1.417 | 0.013514 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 5 | 5 | B.1.1.70 | 0.001705 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 5 | 5 | B.1.177.12 | 0.000758 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 5 | 5 | B.1.621.1 | 0.002529 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 5 | 5 | K.3 | 0.030864 |
ORF1ab/nsp3 | 926 | C926W | tgC | tgG | 4 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 926 | C926G | TgC | GgT | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 926 | C926G | Tgc | Ggc | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 4 | 4 | AY.12 | 0.001264 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 4 | 4 | AY.27 | 0.000259 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 4 | 4 | AY.41 | 0.001176 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 4 | 4 | AY.59 | 0.002119 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 4 | 4 | AY.71 | 0.0019 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp3 | 926 | C926R | Tgc | Cgc | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 4 | 4 | B.1.1.216 | 0.003562 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 4 | 4 | B.1.1.243 | 0.016327 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 4 | 4 | B.1.1.25 | 0.002274 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 4 | 4 | B.1.1.382 | 0.142857 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 4 | 4 | B.1.1.416 | 0.00362 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 4 | 4 | B.1.177.21 | 0.000306 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 4 | 4 | B.1.177.42 | 0.003578 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 4 | 4 | B.1.177.81 | 0.000757 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 4 | 4 | B.1.298 | 0.008457 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 4 | 4 | B.1.499 | 0.004202 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 4 | 4 | B.1.630 | 0.020942 |
ORF1ab/nsp3 | 926 | C926Y | tGc | tAc | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 4 | 4 | Q.3 | 0.00058 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 3 | 3 | AY.106 | 0.001005 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 3 | 3 | AY.114 | 0.000693 |
ORF1ab/nsp3 | 926 | C926Y | tGc | tAc | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp3 | 926 | C926F | tGc | tTc | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 926 | C926F | tGc | tTc | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp3 | 926 | C926del | TGC | --- | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 926 | C926Y | tGc | tAc | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 926 | C926Y | tGc | tAc | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 3 | 3 | AY.88 | 0.002653 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 3 | 3 | AY.92 | 0.000862 |
ORF1ab/nsp3 | 926 | C926Y | tGc | tAc | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp3 | 926 | C926X | tgC | tgA | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 3 | 3 | B.1.1.1 | 0.00098 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 3 | 3 | B.1.1.192 | 0.006928 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 3 | 3 | B.1.1.214 | 0.000166 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 3 | 3 | B.1.1.336 | 0.05 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 3 | 3 | B.1.1.362 | 0.016854 |
ORF1ab/nsp3 | 926 | C926R | Tgc | Cgc | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 926 | C926W | tgC | tgG | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 3 | 3 | B.1.177.62 | 0.003576 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 3 | 3 | B.1.177.75 | 0.003122 |
ORF1ab/nsp3 | 926 | C926X | tgC | tgA | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 3 | 3 | B.1.240 | 0.000647 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 3 | 3 | B.1.351.5 | 0.001799 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 3 | 3 | B.1.369 | 0.000856 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 3 | 3 | B.1.561 | 0.001191 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 3 | 3 | B.1.596.1 | 0.028037 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 3 | 3 | B.1.628 | 0.001057 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 3 | 3 | P.1.10 | 0.000808 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 3 | 3 | P.1.2 | 0.003468 |
ORF1ab/nsp3 | 926 | C926G | TgC | GgT | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2 | 2 | A | 0.000774 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2 | 2 | A.18 | 0.1 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2 | 2 | A.23.1 | 0.001408 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2 | 2 | AY.101 | 0.000981 |
ORF1ab/nsp3 | 926 | C926Y | tGc | tAc | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2 | 2 | AY.105 | 0.001286 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp3 | 926 | C926F | tGc | tTc | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp3 | 926 | C926F | tGc | tTc | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 926 | C926F | tGc | tTc | 2 | 2 | AY.46.1 | 0.002053 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2 | 2 | AY.48 | 0.00093 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2 | 2 | AY.91 | 0.001461 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2 | 2 | B | 0.000256 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2 | 2 | B.1.1.157 | 0.001826 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2 | 2 | B.1.1.175 | 0.153846 |
ORF1ab/nsp3 | 926 | C926Y | tGc | tAc | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp3 | 926 | C926Y | tGc | tAc | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2 | 2 | B.1.1.312 | 0.003824 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2 | 2 | B.1.1.322 | 0.017544 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2 | 2 | B.1.1.397 | 0.004505 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2 | 2 | B.1.1.420 | 0.002012 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp3 | 926 | C926S | Tgc | Agc | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2 | 2 | B.1.157 | 0.00597 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2 | 2 | B.1.177.28 | 0.014815 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp3 | 926 | C926del | TGC | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 926 | C926S | Tgc | Agc | 2 | 2 | B.1.36.1 | 0.002281 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2 | 2 | B.1.36.10 | 0.009569 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2 | 2 | B.1.577 | 0.001375 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp3 | 926 | C926del | TGC | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2 | 2 | B.3 | 0.001661 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp3 | 926 | C926F | tGc | tTc | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp3 | 926 | C926G | Tgc | Ggc | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 926 | C926del | TGC | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 926 | C926X | tgC | tgA | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | AH.3 | 0.003802 |
ORF1ab/nsp3 | 926 | C926A | TGC | GCA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 926 | C926P | TGC | CCT | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 926 | C926del1 | tGc | t-c | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | AM.4 | 0.003571 |
ORF1ab/nsp3 | 926 | C926X | tgC | tgA | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp3 | 926 | C926Y | tGc | tAc | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 926 | C926W | tgC | tgG | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 926 | C926del | TGC | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 926 | C926F | tGc | tTc | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 926 | C926Y | tGc | tAc | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 926 | C926Y | tGc | tAc | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 926 | C926S | tGC | tCA | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp3 | 926 | C926F | tGc | tTc | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 926 | C926del | TGC | --- | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 926 | C926Y | tGc | tAc | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 926 | C926del | TGC | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 926 | C926F | tGc | tTc | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 926 | C926F | tGc | tTc | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 926 | C926Y | tGc | tAc | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 926 | C926S | Tgc | Agc | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 926 | C926S | Tgc | Agc | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 926 | C926Y | tGc | tAc | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 926 | C926del | TGC | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 926 | C926del | TGC | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 926 | C926Y | tGc | tAc | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 926 | C926S | tGc | tCc | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp3 | 926 | C926Y | tGc | tAc | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 926 | C926Y | tGc | tAc | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp3 | 926 | C926del | TGC | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp3 | 926 | C926X | tgC | tgA | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 926 | C926S | Tgc | Agc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 926 | C926F | tGc | tTc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 926 | C926Y | tGc | tAc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 926 | C926del | TGC | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 926 | C926Y | tGc | tAc | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.1.13 | 0.035714 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.1.134 | 0.011364 |
ORF1ab/nsp3 | 926 | C926del | TGC | --- | 1 | 1 | B.1.1.142 | 0.017544 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.1.165 | 0.015385 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.1.204 | 0.00304 |
ORF1ab/nsp3 | 926 | C926X | tgC | tgA | 1 | 1 | B.1.1.210 | 0.005714 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp3 | 926 | C926Y | tGc | tAc | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.1.253 | 0.002506 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.1.267 | 0.010101 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.1.298 | 0.000862 |
ORF1ab/nsp3 | 926 | C926Y | tGc | tAc | 1 | 1 | B.1.1.309 | 0.005848 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 926 | C926Y | tGc | tAc | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.1.34 | 0.013158 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 926 | C926X | tgC | tgA | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 926 | C926F | tGc | tTc | 1 | 1 | B.1.1.440 | 0.011765 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.1.56 | 0.017857 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp3 | 926 | C926del | TGC | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 926 | C926Y | tGc | tAc | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp3 | 926 | C926Y | tGc | tAc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 926 | C926F | tGc | tTc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.177.49 | 0.037037 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp3 | 926 | C926Y | tGc | tAc | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 926 | C926S | Tgc | Agc | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp3 | 926 | C926del | TGC | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 926 | C926A | TGC | GCA | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 926 | C926S | tGc | tCc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp3 | 926 | C926F | tGc | tTc | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.229 | 0.009709 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.235 | 0.002519 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.251 | 0.021739 |
ORF1ab/nsp3 | 926 | C926del | TGC | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp3 | 926 | C926del | TGC | --- | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp3 | 926 | C926G | Tgc | Ggc | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 926 | C926Y | tGc | tAc | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp3 | 926 | C926Y | tGc | tAc | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.393 | 0.028571 |
ORF1ab/nsp3 | 926 | C926S | tGc | tCc | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 926 | C926P | TGC | CCT | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp3 | 926 | C926F | tGc | tTc | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp3 | 926 | C926S | Tgc | Agc | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 926 | C926S | tGc | tCc | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp3 | 926 | C926X | tgC | tgA | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp3 | 926 | C926S | Tgc | Agc | 1 | 1 | B.1.466.1 | 0.007194 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 926 | C926Y | tGc | tAc | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp3 | 926 | C926Y | tGc | tAc | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.530 | 0.007143 |
ORF1ab/nsp3 | 926 | C926Y | tGc | tAc | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.558 | 0.004566 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.581 | 0.009434 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.605 | 0.005952 |
ORF1ab/nsp3 | 926 | C926Y | tGc | tAc | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 926 | C926del1 | tGc | t-c | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp3 | 926 | C926del | TGC | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.23 | 0.002924 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 926 | C926F | tGc | tTc | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | C.23 | 0.005814 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | C.36.1 | 0.004149 |
ORF1ab/nsp3 | 926 | C926F | tGc | tTc | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | C.40 | 0.027778 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | D.5 | 0.004975 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 926 | C926C | tgC | tgT | 1 | 1 | Q.4 | 0.000455 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|