CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 921 | A921A | A1739A | syn | gcC | gcT | 1054 | 927 | 0.879507 | 5480-5482 |
ORF1ab/nsp3 | 921 | A921A | A1739A | syn | gcC | gcA | 1054 | 126 | 0.119545 | 5480-5482 |
ORF1ab/nsp3 | 921 | A921A | A1739A | syn | gcC | gcG | 1054 | 1 | 0.000948767 | 5480-5482 |
ORF1ab/nsp3 | 921 | A921T | A1739T | nonsyn | Gcc | Acc | 276 | 276 | 1 | 5480-5482 |
ORF1ab/nsp3 | 921 | A921V | A1739V | nonsyn | gCc | gTc | 222 | 221 | 0.995495 | 5480-5482 |
ORF1ab/nsp3 | 921 | A921V | A1739V | nonsyn | gCC | gTT | 222 | 1 | 0.0045045 | 5480-5482 |
ORF1ab/nsp3 | 921 | A921S | A1739S | nonsyn | Gcc | Tcc | 31 | 31 | 1 | 5480-5482 |
ORF1ab/nsp3 | 921 | A921del | A1739del | del | GCC | --- | 26 | 26 | 1 | 5480-5482 |
ORF1ab/nsp3 | 921 | A921D | A1739D | nonsyn | gCc | gAc | 5 | 5 | 1 | 5480-5482 |
ORF1ab/nsp3 | 921 | A921P | A1739P | nonsyn | Gcc | Ccc | 4 | 4 | 1 | 5480-5482 |
ORF1ab/nsp3 | 921 | A921del2 | A1739del2 | del | GCc | --c | 2 | 2 | 1 | 5480-5482 |
ORF1ab/nsp3 | 921 | A921del1 | A1739del1 | del | gcC | gc- | 2 | 1 | 0.5 | 5480-5482 |
ORF1ab/nsp3 | 921 | A921del1 | A1739del1 | del | Gcc | -cc | 2 | 1 | 0.5 | 5480-5482 |
ORF1ab/nsp3 | 921 | A921G | A1739G | nonsyn | gCc | gGc | 1 | 1 | 1 | 5480-5482 |
ORF1ab/nsp3 | 921 | A921H | A1739H | nonsyn | GCC | CAT | 1 | 1 | 1 | 5480-5482 |
ORF1ab/nsp3 | 921 | A921F | A1739F | nonsyn | GCC | TTT | 1 | 1 | 1 | 5480-5482 |
ORF1ab/nsp3 | 921 | A921Y | A1739Y | nonsyn | GCc | TAc | 1 | 1 | 1 | 5480-5482 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 927 | 1054 | All | 0.000177 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcA | 126 | 1054 | All | 0.000024 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcG | 1 | 1054 | All | 0 |
ORF1ab/nsp3 | 921 | A921T | Gcc | Acc | 276 | 276 | All | 0.000053 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 221 | 222 | All | 0.000042 |
ORF1ab/nsp3 | 921 | A921V | gCC | gTT | 1 | 222 | All | 0 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 170 | 170 | AY.33 | 0.011352 |
ORF1ab/nsp3 | 921 | A921T | Gcc | Acc | 118 | 118 | AY.4 | 0.000184 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 86 | 94 | B.1.1.7 | 0.000077 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcA | 8 | 94 | B.1.1.7 | 0.000007 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 77 | 77 | AY.107 | 0.035881 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcA | 71 | 71 | B.1.36.18 | 0.029832 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 43 | 59 | AY.47 | 0.001338 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcA | 16 | 59 | AY.47 | 0.000498 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 54 | 58 | AY.4 | 0.000084 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcA | 3 | 58 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcG | 1 | 58 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 51 | 52 | B.1.617.2 | 0.000192 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcA | 1 | 52 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 43 | 43 | B.1.1.7 | 0.000038 |
ORF1ab/nsp3 | 921 | A921T | Gcc | Acc | 40 | 40 | AY.36 | 0.005929 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 37 | 39 | AY.44 | 0.000225 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcA | 2 | 39 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 921 | A921T | Gcc | Acc | 36 | 36 | AY.6 | 0.001481 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 35 | 36 | B.1.2 | 0.000308 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcA | 1 | 36 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 33 | 33 | B.1.1.97 | 0.970588 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 33 | 33 | P.1.17 | 0.005338 |
ORF1ab/nsp3 | 921 | A921S | Gcc | Tcc | 31 | 31 | All | 0.000006 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 29 | 29 | AY.16 | 0.01101 |
ORF1ab/nsp3 | 921 | A921del | GCC | --- | 26 | 26 | All | 0.000005 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 22 | 22 | AY.102 | 0.000583 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 22 | 22 | B.1.429 | 0.000518 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 17 | 19 | B.1 | 0.000156 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcA | 2 | 19 | B.1 | 0.000018 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 16 | 16 | AY.25 | 0.000096 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 15 | 15 | AY.5 | 0.00031 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcA | 7 | 14 | P.1 | 0.00011 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 7 | 14 | P.1 | 0.00011 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 12 | 12 | AY.103 | 0.000075 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 12 | 12 | AY.42 | 0.000483 |
ORF1ab/nsp3 | 921 | A921T | Gcc | Acc | 11 | 11 | B.1.1.7 | 0.00001 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 11 | 11 | B.1.160 | 0.000343 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 9 | 10 | AY.3 | 0.00009 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcA | 1 | 10 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 10 | 10 | AY.43 | 0.000044 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcA | 8 | 10 | P.1.14 | 0.000382 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 2 | 10 | P.1.14 | 0.000096 |
ORF1ab/nsp3 | 921 | A921T | Gcc | Acc | 9 | 9 | AY.3 | 0.00009 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 9 | 9 | AY.4 | 0.000014 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 9 | 9 | AY.46.2 | 0.005718 |
ORF1ab/nsp3 | 921 | A921T | Gcc | Acc | 9 | 9 | B.1.351 | 0.000268 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 8 | 8 | AY.43 | 0.000035 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 8 | 8 | B.1.1 | 0.000145 |
ORF1ab/nsp3 | 921 | A921del | GCC | --- | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp3 | 921 | A921S | Gcc | Tcc | 8 | 8 | B.1.617.2 | 0.00003 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 8 | 8 | P.1.12 | 0.003872 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 7 | 7 | AY.24 | 0.003017 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 6 | 7 | B.1.177 | 0.000079 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcA | 1 | 7 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 921 | A921T | Gcc | Acc | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 7 | 7 | B.1.36 | 0.001021 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 7 | 7 | B.1.526 | 0.000165 |
ORF1ab/nsp3 | 921 | A921T | Gcc | Acc | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp3 | 921 | A921T | Gcc | Acc | 7 | 7 | C.36 | 0.006375 |
ORF1ab/nsp3 | 921 | A921T | Gcc | Acc | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 6 | 6 | AY.39 | 0.000148 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 6 | 6 | AY.4.2 | 0.00013 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 6 | 6 | AY.5 | 0.000124 |
ORF1ab/nsp3 | 921 | A921T | Gcc | Acc | 6 | 6 | AY.7.2 | 0.003356 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 6 | 6 | B.1.1.318 | 0.001811 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 6 | 6 | B.1.1.519 | 0.000238 |
ORF1ab/nsp3 | 921 | A921D | gCc | gAc | 5 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 4 | 5 | B.1.1 | 0.000073 |
ORF1ab/nsp3 | 921 | A921V | gCC | gTT | 1 | 5 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 5 | 5 | B.1.427 | 0.000252 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 5 | 5 | B.1.637 | 0.000365 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp3 | 921 | A921P | Gcc | Ccc | 4 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 4 | 4 | AY.120 | 0.000149 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 4 | 4 | AY.46.6 | 0.000289 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 4 | 4 | B.1.1.348 | 0.003185 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 4 | 4 | B.1.258.14 | 0.003922 |
ORF1ab/nsp3 | 921 | A921S | Gcc | Tcc | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp3 | 921 | A921S | Gcc | Tcc | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp3 | 921 | A921del | GCC | --- | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 3 | 3 | AY.53 | 0.000863 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp3 | 921 | A921D | gCc | gAc | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 3 | 3 | B.1.1.291 | 0.002227 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 3 | 3 | B.1.177.4 | 0.000633 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 3 | 3 | B.1.177.43 | 0.004431 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp3 | 921 | A921del2 | GCc | --c | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 921 | A921del1 | Gcc | -cc | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 921 | A921del1 | gcC | gc- | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 921 | A921T | Gcc | Acc | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 2 | 2 | AY.107 | 0.000932 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 921 | A921S | Gcc | Tcc | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 2 | 2 | AY.46.1 | 0.002053 |
ORF1ab/nsp3 | 921 | A921S | Gcc | Tcc | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp3 | 921 | A921T | Gcc | Acc | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 1 | 2 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcA | 1 | 2 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 2 | 2 | B.1.1.432 | 0.002532 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 2 | 2 | B.1.177.17 | 0.001642 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp3 | 921 | A921del | GCC | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 921 | A921S | Gcc | Tcc | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 2 | 2 | B.1.568 | 0.002222 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 1 | 2 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcA | 1 | 2 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 2 | 2 | P.1.8 | 0.009569 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 921 | A921del | GCC | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 921 | A921del | GCC | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 921 | A921T | Gcc | Acc | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 1 | 1 | A.2.5.1 | 0.004808 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp3 | 921 | A921F | GCC | TTT | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 921 | A921Y | GCc | TAc | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 921 | A921G | gCc | gGc | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 921 | A921H | GCC | CAT | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 921 | A921T | Gcc | Acc | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 921 | A921S | Gcc | Tcc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 921 | A921del | GCC | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 921 | A921T | Gcc | Acc | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 921 | A921S | Gcc | Tcc | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 921 | A921T | Gcc | Acc | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 921 | A921del | GCC | --- | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 921 | A921T | Gcc | Acc | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 921 | A921del2 | GCc | --c | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 921 | A921T | Gcc | Acc | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 921 | A921S | Gcc | Tcc | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 921 | A921P | Gcc | Ccc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 921 | A921T | Gcc | Acc | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 921 | A921T | Gcc | Acc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 921 | A921T | Gcc | Acc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 921 | A921S | Gcc | Tcc | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 921 | A921D | gCc | gAc | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 921 | A921T | Gcc | Acc | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcA | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 921 | A921del | GCC | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 921 | A921del2 | GCc | --c | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 921 | A921S | Gcc | Tcc | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 921 | A921S | Gcc | Tcc | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 921 | A921T | Gcc | Acc | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 921 | A921del | GCC | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp3 | 921 | A921D | gCc | gAc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 921 | A921T | Gcc | Acc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 921 | A921T | Gcc | Acc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 921 | A921G | gCc | gGc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 921 | A921del1 | Gcc | -cc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 921 | A921S | Gcc | Tcc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 921 | A921P | Gcc | Ccc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 921 | A921F | GCC | TTT | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 921 | A921del | GCC | --- | 1 | 1 | B.1.1.142 | 0.017544 |
ORF1ab/nsp3 | 921 | A921P | Gcc | Ccc | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 921 | A921S | Gcc | Tcc | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 1 | 1 | B.1.1.407 | 0.041667 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 921 | A921P | Gcc | Ccc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 921 | A921S | Gcc | Tcc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp3 | 921 | A921del | GCC | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 1 | 1 | B.1.160.12 | 0.00641 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 1 | 1 | B.1.162 | 0.005025 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp3 | 921 | A921del | GCC | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 921 | A921del | GCC | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 1 | 1 | B.1.221.4 | 0.004167 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 921 | A921H | GCC | CAT | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 921 | A921del | GCC | --- | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 1 | 1 | B.1.36.21 | 0.00216 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 921 | A921T | Gcc | Acc | 1 | 1 | B.1.377 | 0.004566 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcA | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcA | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 921 | A921T | Gcc | Acc | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 1 | 1 | B.1.521 | 0.004975 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 1 | 1 | B.1.603 | 0.010638 |
ORF1ab/nsp3 | 921 | A921Y | GCc | TAc | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 921 | A921del | GCC | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 921 | A921del1 | gcC | gc- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 1 | 1 | B.1.91 | 0.002075 |
ORF1ab/nsp3 | 921 | A921del | GCC | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp3 | 921 | A921T | Gcc | Acc | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 921 | A921A | gcC | gcT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 921 | A921S | Gcc | Tcc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 921 | A921V | gCc | gTc | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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