CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 921

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3921A921AA1739AsyngcCgcT10549270.8795075480-5482
ORF1ab/nsp3921A921AA1739AsyngcCgcA10541260.1195455480-5482
ORF1ab/nsp3921A921AA1739AsyngcCgcG105410.0009487675480-5482
ORF1ab/nsp3921A921TA1739TnonsynGccAcc27627615480-5482
ORF1ab/nsp3921A921VA1739VnonsyngCcgTc2222210.9954955480-5482
ORF1ab/nsp3921A921VA1739VnonsyngCCgTT22210.00450455480-5482
ORF1ab/nsp3921A921SA1739SnonsynGccTcc313115480-5482
ORF1ab/nsp3921A921delA1739deldelGCC---262615480-5482
ORF1ab/nsp3921A921DA1739DnonsyngCcgAc5515480-5482
ORF1ab/nsp3921A921PA1739PnonsynGccCcc4415480-5482
ORF1ab/nsp3921A921del2A1739del2delGCc--c2215480-5482
ORF1ab/nsp3921A921del1A1739del1delgcCgc-210.55480-5482
ORF1ab/nsp3921A921del1A1739del1delGcc-cc210.55480-5482
ORF1ab/nsp3921A921GA1739GnonsyngCcgGc1115480-5482
ORF1ab/nsp3921A921HA1739HnonsynGCCCAT1115480-5482
ORF1ab/nsp3921A921FA1739FnonsynGCCTTT1115480-5482
ORF1ab/nsp3921A921YA1739YnonsynGCcTAc1115480-5482

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3921A921AgcCgcT9271054All0.000177
ORF1ab/nsp3921A921AgcCgcA1261054All0.000024
ORF1ab/nsp3921A921AgcCgcG11054All0
ORF1ab/nsp3921A921TGccAcc276276All0.000053
ORF1ab/nsp3921A921VgCcgTc221222All0.000042
ORF1ab/nsp3921A921VgCCgTT1222All0
ORF1ab/nsp3921A921AgcCgcT170170AY.330.011352
ORF1ab/nsp3921A921TGccAcc118118AY.40.000184
ORF1ab/nsp3921A921AgcCgcT8694B.1.1.70.000077
ORF1ab/nsp3921A921AgcCgcA894B.1.1.70.000007
ORF1ab/nsp3921A921AgcCgcT7777AY.1070.035881
ORF1ab/nsp3921A921AgcCgcA7171B.1.36.180.029832
ORF1ab/nsp3921A921AgcCgcT4359AY.470.001338
ORF1ab/nsp3921A921AgcCgcA1659AY.470.000498
ORF1ab/nsp3921A921AgcCgcT5458AY.40.000084
ORF1ab/nsp3921A921AgcCgcA358AY.40.000005
ORF1ab/nsp3921A921AgcCgcG158AY.40.000002
ORF1ab/nsp3921A921AgcCgcT5152B.1.617.20.000192
ORF1ab/nsp3921A921AgcCgcA152B.1.617.20.000004
ORF1ab/nsp3921A921VgCcgTc4343B.1.1.70.000038
ORF1ab/nsp3921A921TGccAcc4040AY.360.005929
ORF1ab/nsp3921A921AgcCgcT3739AY.440.000225
ORF1ab/nsp3921A921AgcCgcA239AY.440.000012
ORF1ab/nsp3921A921TGccAcc3636AY.60.001481
ORF1ab/nsp3921A921AgcCgcT3536B.1.20.000308
ORF1ab/nsp3921A921AgcCgcA136B.1.20.000009
ORF1ab/nsp3921A921AgcCgcT3333B.1.1.970.970588
ORF1ab/nsp3921A921VgCcgTc3333P.1.170.005338
ORF1ab/nsp3921A921SGccTcc3131All0.000006
ORF1ab/nsp3921A921AgcCgcT2929AY.160.01101
ORF1ab/nsp3921A921delGCC---2626All0.000005
ORF1ab/nsp3921A921AgcCgcT2222AY.1020.000583
ORF1ab/nsp3921A921AgcCgcT2222B.1.4290.000518
ORF1ab/nsp3921A921AgcCgcT1719B.10.000156
ORF1ab/nsp3921A921AgcCgcA219B.10.000018
ORF1ab/nsp3921A921AgcCgcT1616AY.250.000096
ORF1ab/nsp3921A921VgCcgTc1515AY.50.00031
ORF1ab/nsp3921A921AgcCgcA714P.10.00011
ORF1ab/nsp3921A921AgcCgcT714P.10.00011
ORF1ab/nsp3921A921AgcCgcT1212AY.1030.000075
ORF1ab/nsp3921A921VgCcgTc1212AY.420.000483
ORF1ab/nsp3921A921TGccAcc1111B.1.1.70.00001
ORF1ab/nsp3921A921AgcCgcT1111B.1.1600.000343
ORF1ab/nsp3921A921AgcCgcT910AY.30.00009
ORF1ab/nsp3921A921AgcCgcA110AY.30.00001
ORF1ab/nsp3921A921AgcCgcT1010AY.430.000044
ORF1ab/nsp3921A921AgcCgcA810P.1.140.000382
ORF1ab/nsp3921A921AgcCgcT210P.1.140.000096
ORF1ab/nsp3921A921TGccAcc99AY.30.00009
ORF1ab/nsp3921A921VgCcgTc99AY.40.000014
ORF1ab/nsp3921A921AgcCgcT99AY.46.20.005718
ORF1ab/nsp3921A921TGccAcc99B.1.3510.000268
ORF1ab/nsp3921A921VgCcgTc88AY.430.000035
ORF1ab/nsp3921A921AgcCgcT88B.1.10.000145
ORF1ab/nsp3921A921delGCC---88B.1.1.70.000007
ORF1ab/nsp3921A921SGccTcc88B.1.617.20.00003
ORF1ab/nsp3921A921AgcCgcT88P.1.120.003872
ORF1ab/nsp3921A921AgcCgcT77AY.240.003017
ORF1ab/nsp3921A921AgcCgcT67B.1.1770.000079
ORF1ab/nsp3921A921AgcCgcA17B.1.1770.000013
ORF1ab/nsp3921A921TGccAcc77B.1.20.000062
ORF1ab/nsp3921A921AgcCgcT77B.1.360.001021
ORF1ab/nsp3921A921VgCcgTc77B.1.5260.000165
ORF1ab/nsp3921A921TGccAcc77B.1.617.20.000026
ORF1ab/nsp3921A921TGccAcc77C.360.006375
ORF1ab/nsp3921A921TGccAcc66AY.250.000036
ORF1ab/nsp3921A921AgcCgcT66AY.390.000148
ORF1ab/nsp3921A921AgcCgcT66AY.4.20.00013
ORF1ab/nsp3921A921AgcCgcT66AY.50.000124
ORF1ab/nsp3921A921TGccAcc66AY.7.20.003356
ORF1ab/nsp3921A921AgcCgcT66B.1.1.3180.001811
ORF1ab/nsp3921A921AgcCgcT66B.1.1.5190.000238
ORF1ab/nsp3921A921DgCcgAc55All0.000001
ORF1ab/nsp3921A921VgCcgTc55AY.250.00003
ORF1ab/nsp3921A921VgCcgTc45B.1.10.000073
ORF1ab/nsp3921A921VgCCgTT15B.1.10.000018
ORF1ab/nsp3921A921VgCcgTc55B.1.4270.000252
ORF1ab/nsp3921A921AgcCgcT55B.1.5260.000118
ORF1ab/nsp3921A921VgCcgTc55B.1.617.20.000019
ORF1ab/nsp3921A921AgcCgcT55B.1.6370.000365
ORF1ab/nsp3921A921VgCcgTc55P.10.000079
ORF1ab/nsp3921A921PGccCcc44All0.000001
ORF1ab/nsp3921A921VgCcgTc44AY.1030.000025
ORF1ab/nsp3921A921AgcCgcT44AY.1200.000149
ORF1ab/nsp3921A921AgcCgcT44AY.46.60.000289
ORF1ab/nsp3921A921AgcCgcT44AY.610.000419
ORF1ab/nsp3921A921AgcCgcT44B.1.1.3480.003185
ORF1ab/nsp3921A921VgCcgTc44B.1.20.000035
ORF1ab/nsp3921A921AgcCgcT44B.1.258.140.003922
ORF1ab/nsp3921A921SGccTcc44P.1.140.000191
ORF1ab/nsp3921A921SGccTcc33AY.1200.000112
ORF1ab/nsp3921A921AgcCgcT33AY.200.000117
ORF1ab/nsp3921A921AgcCgcT33AY.260.000085
ORF1ab/nsp3921A921VgCcgTc33AY.390.000074
ORF1ab/nsp3921A921delGCC---33AY.40.000005
ORF1ab/nsp3921A921VgCcgTc33AY.440.000018
ORF1ab/nsp3921A921AgcCgcT33AY.450.000365
ORF1ab/nsp3921A921AgcCgcT33AY.530.000863
ORF1ab/nsp3921A921VgCcgTc33AY.90.000203
ORF1ab/nsp3921A921DgCcgAc33B.10.000027
ORF1ab/nsp3921A921VgCcgTc33B.10.000027
ORF1ab/nsp3921A921AgcCgcT33B.1.1.2220.000612
ORF1ab/nsp3921A921VgCcgTc33B.1.1.2910.002227
ORF1ab/nsp3921A921VgCcgTc33B.1.1770.00004
ORF1ab/nsp3921A921AgcCgcT33B.1.177.40.000633
ORF1ab/nsp3921A921AgcCgcT33B.1.177.430.004431
ORF1ab/nsp3921A921AgcCgcT33B.1.4270.000151
ORF1ab/nsp3921A921AgcCgcT33C.370.000348
ORF1ab/nsp3921A921del2GCc--c22All0
ORF1ab/nsp3921A921del1Gcc-cc12All0
ORF1ab/nsp3921A921del1gcCgc-12All0
ORF1ab/nsp3921A921TGccAcc22AY.1020.000053
ORF1ab/nsp3921A921VgCcgTc22AY.1070.000932
ORF1ab/nsp3921A921AgcCgcT22AY.1190.000071
ORF1ab/nsp3921A921AgcCgcT22AY.230.000139
ORF1ab/nsp3921A921SGccTcc22AY.40.000003
ORF1ab/nsp3921A921AgcCgcT22AY.46.10.002053
ORF1ab/nsp3921A921SGccTcc22AY.610.00021
ORF1ab/nsp3921A921TGccAcc22AY.610.00021
ORF1ab/nsp3921A921AgcCgcT12AY.7.10.000113
ORF1ab/nsp3921A921AgcCgcA12AY.7.10.000113
ORF1ab/nsp3921A921VgCcgTc22B.1.1.4320.002532
ORF1ab/nsp3921A921VgCcgTc22B.1.1600.000062
ORF1ab/nsp3921A921VgCcgTc22B.1.177.170.001642
ORF1ab/nsp3921A921AgcCgcT22B.1.2400.000431
ORF1ab/nsp3921A921delGCC---22B.1.360.000292
ORF1ab/nsp3921A921SGccTcc22B.1.4290.000047
ORF1ab/nsp3921A921AgcCgcT22B.1.5680.002222
ORF1ab/nsp3921A921AgcCgcT12B.1.5960.000087
ORF1ab/nsp3921A921AgcCgcA12B.1.5960.000087
ORF1ab/nsp3921A921AgcCgcT22B.1.6090.000959
ORF1ab/nsp3921A921VgCcgTc22B.1.6210.000177
ORF1ab/nsp3921A921AgcCgcT22P.1.80.009569
ORF1ab/nsp3921A921AgcCgcT11A0.000387
ORF1ab/nsp3921A921delGCC---11A0.000387
ORF1ab/nsp3921A921delGCC---11A.2.20.001689
ORF1ab/nsp3921A921VgCcgTc11A.2.40.003367
ORF1ab/nsp3921A921TGccAcc11A.2.40.003367
ORF1ab/nsp3921A921AgcCgcT11A.2.5.10.004808
ORF1ab/nsp3921A921AgcCgcT11AE.80.000489
ORF1ab/nsp3921A921FGCCTTT11All0
ORF1ab/nsp3921A921YGCcTAc11All0
ORF1ab/nsp3921A921GgCcgGc11All0
ORF1ab/nsp3921A921HGCCCAT11All0
ORF1ab/nsp3921A921TGccAcc11AY.1000.000046
ORF1ab/nsp3921A921AgcCgcT11AY.1010.00049
ORF1ab/nsp3921A921VgCcgTc11AY.1020.000027
ORF1ab/nsp3921A921SGccTcc11AY.1030.000006
ORF1ab/nsp3921A921AgcCgcT11AY.1060.000335
ORF1ab/nsp3921A921delGCC---11AY.1080.001103
ORF1ab/nsp3921A921TGccAcc11AY.1130.000142
ORF1ab/nsp3921A921VgCcgTc11AY.1160.000287
ORF1ab/nsp3921A921VgCcgTc11AY.116.10.000311
ORF1ab/nsp3921A921SGccTcc11AY.1170.000085
ORF1ab/nsp3921A921AgcCgcT11AY.1170.000085
ORF1ab/nsp3921A921VgCcgTc11AY.1190.000035
ORF1ab/nsp3921A921VgCcgTc11AY.1200.000037
ORF1ab/nsp3921A921AgcCgcT11AY.120.20.001285
ORF1ab/nsp3921A921AgcCgcT11AY.140.000088
ORF1ab/nsp3921A921AgcCgcT11AY.16.10.00047
ORF1ab/nsp3921A921TGccAcc11AY.200.000039
ORF1ab/nsp3921A921VgCcgTc11AY.230.00007
ORF1ab/nsp3921A921AgcCgcT11AY.23.10.000417
ORF1ab/nsp3921A921delGCC---11AY.260.000028
ORF1ab/nsp3921A921TGccAcc11AY.290.000016
ORF1ab/nsp3921A921del2GCc--c11AY.30.00001
ORF1ab/nsp3921A921AgcCgcT11AY.3.10.000085
ORF1ab/nsp3921A921AgcCgcT11AY.300.000396
ORF1ab/nsp3921A921VgCcgTc11AY.330.000067
ORF1ab/nsp3921A921VgCcgTc11AY.340.000097
ORF1ab/nsp3921A921TGccAcc11AY.340.000097
ORF1ab/nsp3921A921AgcCgcT11AY.350.000233
ORF1ab/nsp3921A921VgCcgTc11AY.360.000148
ORF1ab/nsp3921A921SGccTcc11AY.380.000499
ORF1ab/nsp3921A921PGccCcc11AY.40.000002
ORF1ab/nsp3921A921TGccAcc11AY.4.50.000107
ORF1ab/nsp3921A921TGccAcc11AY.430.000004
ORF1ab/nsp3921A921TGccAcc11AY.440.000006
ORF1ab/nsp3921A921AgcCgcT11AY.46.40.000165
ORF1ab/nsp3921A921SGccTcc11AY.50.000021
ORF1ab/nsp3921A921DgCcgAc11AY.50.000021
ORF1ab/nsp3921A921TGccAcc11AY.50.000021
ORF1ab/nsp3921A921AgcCgcT11AY.5.40.000277
ORF1ab/nsp3921A921AgcCgcT11AY.560.001605
ORF1ab/nsp3921A921AgcCgcT11AY.60.000041
ORF1ab/nsp3921A921AgcCgcA11AY.620.000436
ORF1ab/nsp3921A921VgCcgTc11AY.630.000387
ORF1ab/nsp3921A921AgcCgcT11AY.650.000533
ORF1ab/nsp3921A921delGCC---11AY.660.00107
ORF1ab/nsp3921A921del2GCc--c11AY.670.000464
ORF1ab/nsp3921A921VgCcgTc11AY.750.000056
ORF1ab/nsp3921A921VgCcgTc11AY.840.000437
ORF1ab/nsp3921A921AgcCgcT11AY.90.000068
ORF1ab/nsp3921A921SGccTcc11AY.90.000068
ORF1ab/nsp3921A921SGccTcc11AY.9.20.000037
ORF1ab/nsp3921A921TGccAcc11AY.9.20.000037
ORF1ab/nsp3921A921AgcCgcT11AY.9.20.000037
ORF1ab/nsp3921A921VgCcgTc11AY.910.00073
ORF1ab/nsp3921A921VgCcgTc11AY.920.000287
ORF1ab/nsp3921A921AgcCgcT11AY.98.10.000048
ORF1ab/nsp3921A921VgCcgTc11AY.98.10.000048
ORF1ab/nsp3921A921delGCC---11AY.99.10.001553
ORF1ab/nsp3921A921DgCcgAc11B0.000128
ORF1ab/nsp3921A921TGccAcc11B0.000128
ORF1ab/nsp3921A921TGccAcc11B.10.000009
ORF1ab/nsp3921A921GgCcgGc11B.10.000009
ORF1ab/nsp3921A921del1Gcc-cc11B.10.000009
ORF1ab/nsp3921A921SGccTcc11B.10.000009
ORF1ab/nsp3921A921PGccCcc11B.10.000009
ORF1ab/nsp3921A921FGCCTTT11B.1.10.000018
ORF1ab/nsp3921A921delGCC---11B.1.1.1420.017544
ORF1ab/nsp3921A921PGccCcc11B.1.1.1700.001247
ORF1ab/nsp3921A921AgcCgcT11B.1.1.250.000569
ORF1ab/nsp3921A921VgCcgTc11B.1.1.3110.000358
ORF1ab/nsp3921A921SGccTcc11B.1.1.390.00051
ORF1ab/nsp3921A921AgcCgcT11B.1.1.4070.041667
ORF1ab/nsp3921A921AgcCgcT11B.1.1.4130.006897
ORF1ab/nsp3921A921VgCcgTc11B.1.1.4340.000349
ORF1ab/nsp3921A921PGccCcc11B.1.1.70.000001
ORF1ab/nsp3921A921SGccTcc11B.1.1.70.000001
ORF1ab/nsp3921A921VgCcgTc11B.1.1470.000756
ORF1ab/nsp3921A921delGCC---11B.1.1600.000031
ORF1ab/nsp3921A921VgCcgTc11B.1.160.120.00641
ORF1ab/nsp3921A921VgCcgTc11B.1.160.140.002119
ORF1ab/nsp3921A921AgcCgcT11B.1.1620.005025
ORF1ab/nsp3921A921VgCcgTc11B.1.177.120.000152
ORF1ab/nsp3921A921delGCC---11B.1.177.160.000664
ORF1ab/nsp3921A921AgcCgcT11B.1.177.210.000076
ORF1ab/nsp3921A921delGCC---11B.1.20.000009
ORF1ab/nsp3921A921AgcCgcT11B.1.221.40.004167
ORF1ab/nsp3921A921AgcCgcT11B.1.2340.000132
ORF1ab/nsp3921A921AgcCgcT11B.1.2580.000067
ORF1ab/nsp3921A921HGCCCAT11B.1.2580.000067
ORF1ab/nsp3921A921delGCC---11B.1.3190.003049
ORF1ab/nsp3921A921AgcCgcT11B.1.3320.003497
ORF1ab/nsp3921A921AgcCgcT11B.1.3510.00003
ORF1ab/nsp3921A921AgcCgcT11B.1.36.210.00216
ORF1ab/nsp3921A921VgCcgTc11B.1.3610.001289
ORF1ab/nsp3921A921AgcCgcT11B.1.3670.000792
ORF1ab/nsp3921A921VgCcgTc11B.1.3670.000792
ORF1ab/nsp3921A921TGccAcc11B.1.3770.004566
ORF1ab/nsp3921A921AgcCgcA11B.1.4000.000429
ORF1ab/nsp3921A921VgCcgTc11B.1.4290.000024
ORF1ab/nsp3921A921AgcCgcA11B.1.438.10.000107
ORF1ab/nsp3921A921TGccAcc11B.1.4700.001404
ORF1ab/nsp3921A921VgCcgTc11B.1.5210.004975
ORF1ab/nsp3921A921VgCcgTc11B.1.5230.002451
ORF1ab/nsp3921A921VgCcgTc11B.1.5610.000397
ORF1ab/nsp3921A921VgCcgTc11B.1.6030.010638
ORF1ab/nsp3921A921YGCcTAc11B.1.617.10.000129
ORF1ab/nsp3921A921AgcCgcT11B.1.617.10.000129
ORF1ab/nsp3921A921delGCC---11B.1.617.20.000004
ORF1ab/nsp3921A921del1gcCgc-11B.1.617.20.000004
ORF1ab/nsp3921A921AgcCgcT11B.1.910.002075
ORF1ab/nsp3921A921delGCC---11B.150.017544
ORF1ab/nsp3921A921VgCcgTc11C.160.00106
ORF1ab/nsp3921A921TGccAcc11C.370.000116
ORF1ab/nsp3921A921AgcCgcT11D.20.000075
ORF1ab/nsp3921A921SGccTcc11D.20.000075
ORF1ab/nsp3921A921VgCcgTc11P.1.140.000048
ORF1ab/nsp3921A921VgCcgTc11P.1.150.000232
ORF1ab/nsp3921A921VgCcgTc11Q.80.000165
ORF1ab/nsp3921A921VgCcgTc11R.10.00009