CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 92 & Codon = gaT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp392E92DE910DnonsyngaGgaT5014950.9880242993-2995

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp392E92DgaGgaT495501All0.000095
ORF1ab/nsp392E92DgaGgaT9999AY.40.000154
ORF1ab/nsp392E92DgaGgaT5556AY.440.000335
ORF1ab/nsp392E92DgaGgaT4344B.1.1.70.000038
ORF1ab/nsp392E92DgaGgaT2828B.1.617.20.000105
ORF1ab/nsp392E92DgaGgaT2323B.1.3490.01644
ORF1ab/nsp392E92DgaGgaT2121AY.4.20.000455
ORF1ab/nsp392E92DgaGgaT2121AY.860.017427
ORF1ab/nsp392E92DgaGgaT1920P.10.000299
ORF1ab/nsp392E92DgaGgaT1212AY.1070.005592
ORF1ab/nsp392E92DgaGgaT1010AY.1030.000062
ORF1ab/nsp392E92DgaGgaT1010B.1.1.3060.004384
ORF1ab/nsp392E92DgaGgaT1010B.1.177.440.005189
ORF1ab/nsp392E92DgaGgaT1010C.50.909091
ORF1ab/nsp392E92DgaGgaT88AY.430.000035
ORF1ab/nsp392E92DgaGgaT88B.10.000073
ORF1ab/nsp392E92DgaGgaT77AY.390.000173
ORF1ab/nsp392E92DgaGgaT77B.1.5260.000165
ORF1ab/nsp392E92DgaGgaT66B.1.1.10.00196
ORF1ab/nsp392E92DgaGgaT55B.1.10.000091
ORF1ab/nsp392E92DgaGgaT55B.1.1600.000156
ORF1ab/nsp392E92DgaGgaT55B.1.6230.002682
ORF1ab/nsp392E92DgaGgaT44AY.250.000024
ORF1ab/nsp392E92DgaGgaT44B.1.2210.000284
ORF1ab/nsp392E92DgaGgaT44B.1.2340.000528
ORF1ab/nsp392E92DgaGgaT44B.1.6370.000292
ORF1ab/nsp392E92DgaGgaT33AY.1020.00008
ORF1ab/nsp392E92DgaGgaT33AY.1190.000106
ORF1ab/nsp392E92DgaGgaT33AY.140.000264
ORF1ab/nsp392E92DgaGgaT33AY.30.00003
ORF1ab/nsp392E92DgaGgaT33B.1.1.4130.02069
ORF1ab/nsp392E92DgaGgaT33B.1.1770.00004
ORF1ab/nsp392E92DgaGgaT33B.1.4800.007463
ORF1ab/nsp392E92DgaGgaT22AY.1000.000092
ORF1ab/nsp392E92DgaGgaT22AY.200.000078
ORF1ab/nsp392E92DgaGgaT22AY.50.000041
ORF1ab/nsp392E92DgaGgaT22AZ.20.001642
ORF1ab/nsp392E92DgaGgaT12B.1.1.390.00051
ORF1ab/nsp392E92DgaGgaT22B.1.1890.008584
ORF1ab/nsp392E92DgaGgaT22B.1.3110.000549
ORF1ab/nsp392E92DgaGgaT22B.1.36.290.001035
ORF1ab/nsp392E92DgaGgaT22B.1.4290.000047
ORF1ab/nsp392E92DgaGgaT22B.1.5380.016129
ORF1ab/nsp392E92DgaGgaT11A.23.10.000704
ORF1ab/nsp392E92DgaGgaT11AY.1130.000142
ORF1ab/nsp392E92DgaGgaT11AY.1160.000287
ORF1ab/nsp392E92DgaGgaT11AY.1170.000085
ORF1ab/nsp392E92DgaGgaT11AY.39.10.00004
ORF1ab/nsp392E92DgaGgaT11AY.4.50.000107
ORF1ab/nsp392E92DgaGgaT11AY.420.00004
ORF1ab/nsp392E92DgaGgaT11AY.46.60.000072
ORF1ab/nsp392E92DgaGgaT11AY.75.10.00018
ORF1ab/nsp392E92DgaGgaT11AY.9.20.000037
ORF1ab/nsp392E92DgaGgaT11B.1.1.1740.003378
ORF1ab/nsp392E92DgaGgaT11B.1.1.250.000569
ORF1ab/nsp392E92DgaGgaT11B.1.1.280.000311
ORF1ab/nsp392E92DgaGgaT11B.1.1.3160.000925
ORF1ab/nsp392E92DgaGgaT11B.1.1.3480.000796
ORF1ab/nsp392E92DgaGgaT11B.1.1.3560.008547
ORF1ab/nsp392E92DgaGgaT11B.1.1030.019231
ORF1ab/nsp392E92DgaGgaT11B.1.1280.000635
ORF1ab/nsp392E92DgaGgaT11B.1.1310.008772
ORF1ab/nsp392E92DgaGgaT11B.1.160.160.000929
ORF1ab/nsp392E92DgaGgaT11B.1.177.860.000183
ORF1ab/nsp392E92DgaGgaT11B.1.2400.000216
ORF1ab/nsp392E92DgaGgaT11B.1.3510.00003
ORF1ab/nsp392E92DgaGgaT11B.1.4080.00369
ORF1ab/nsp392E92DgaGgaT11B.1.5240.001406
ORF1ab/nsp392E92DgaGgaT11P.1.140.000048
ORF1ab/nsp392E92DgaGgaT11P.1.150.000232

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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