CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 92

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp392E92DE910DnonsyngaGgaT5014950.9880242993-2995
ORF1ab/nsp392E92DE910DnonsyngaGgaC50160.0119762993-2995
ORF1ab/nsp392E92GE910GnonsyngAggGg3063040.9934642993-2995
ORF1ab/nsp392E92GE910GnonsyngAGgGT30610.003267972993-2995
ORF1ab/nsp392E92GE910GnonsyngAGgGA30610.003267972993-2995
ORF1ab/nsp392E92KE910KnonsynGagAag26026012993-2995
ORF1ab/nsp392E92EE910EsyngaGgaA19019012993-2995
ORF1ab/nsp392E92delE910deldelGAG---404012993-2995
ORF1ab/nsp392E92VE910VnonsyngAggTg242412993-2995
ORF1ab/nsp392E92AE910AnonsyngAggCg202012993-2995
ORF1ab/nsp392E92XE910XnonsynGagTag7712993-2995
ORF1ab/nsp392E92del1E910del1delgaGga-650.8333332993-2995
ORF1ab/nsp392E92del1E910del1delgAgg-g610.1666672993-2995
ORF1ab/nsp392E92FE910FnonsynGAGTTC530.62993-2995
ORF1ab/nsp392E92SE910SnonsynGAGTCC530.62993-2995
ORF1ab/nsp392E92FE910FnonsynGAGTTT520.42993-2995
ORF1ab/nsp392E92SE910SnonsynGAGTCT520.42993-2995
ORF1ab/nsp392E92TE910TnonsynGAGACC420.52993-2995
ORF1ab/nsp392E92TE910TnonsynGAGACT420.52993-2995
ORF1ab/nsp392E92IE910InonsynGAGATT420.52993-2995
ORF1ab/nsp392E92IE910InonsynGAGATC420.52993-2995
ORF1ab/nsp392E92QE910QnonsynGagCag3312993-2995
ORF1ab/nsp392E92YE910YnonsynGaGTaC2212993-2995
ORF1ab/nsp392E92LE910LnonsynGAgTTg2212993-2995
ORF1ab/nsp392E92RE910RnonsynGAgAGg2212993-2995
ORF1ab/nsp392E92ME910MnonsynGAgATg2212993-2995
ORF1ab/nsp392E92del2E910del2delgAGg--210.52993-2995
ORF1ab/nsp392E92del2E910del2delGAg--g210.52993-2995
ORF1ab/nsp392E92PE910PnonsynGAGCCC1112993-2995
ORF1ab/nsp392E92NE910NnonsynGaGAaT1112993-2995

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp392E92DgaGgaT495501All0.000095
ORF1ab/nsp392E92DgaGgaC6501All0.000001
ORF1ab/nsp392E92GgAggGg304306All0.000058
ORF1ab/nsp392E92GgAGgGT1306All0
ORF1ab/nsp392E92GgAGgGA1306All0
ORF1ab/nsp392E92KGagAag260260All0.00005
ORF1ab/nsp392E92KGagAag212212B.1.1770.002792
ORF1ab/nsp392E92EgaGgaA190190All0.000036
ORF1ab/nsp392E92GgAggGg169169B.1.177.701
ORF1ab/nsp392E92DgaGgaT9999AY.40.000154
ORF1ab/nsp392E92DgaGgaT5556AY.440.000335
ORF1ab/nsp392E92DgaGgaC156AY.440.000006
ORF1ab/nsp392E92EgaGgaA4646B.1.1.70.000041
ORF1ab/nsp392E92DgaGgaT4344B.1.1.70.000038
ORF1ab/nsp392E92DgaGgaC144B.1.1.70.000001
ORF1ab/nsp392E92delGAG---4040All0.000008
ORF1ab/nsp392E92GgAggGg3535AY.430.000155
ORF1ab/nsp392E92DgaGgaT2828B.1.617.20.000105
ORF1ab/nsp392E92VgAggTg2424All0.000005
ORF1ab/nsp392E92DgaGgaT2323B.1.3490.01644
ORF1ab/nsp392E92GgAggGg2222B.1.1.70.00002
ORF1ab/nsp392E92DgaGgaT2121AY.4.20.000455
ORF1ab/nsp392E92DgaGgaT2121AY.860.017427
ORF1ab/nsp392E92AgAggCg2020All0.000004
ORF1ab/nsp392E92DgaGgaT1920P.10.000299
ORF1ab/nsp392E92DgaGgaC120P.10.000016
ORF1ab/nsp392E92EgaGgaA1717C.180.044041
ORF1ab/nsp392E92EgaGgaA1515AY.430.000066
ORF1ab/nsp392E92EgaGgaA1515P.10.000236
ORF1ab/nsp392E92GgAggGg1414B.1.3110.003844
ORF1ab/nsp392E92DgaGgaT1212AY.1070.005592
ORF1ab/nsp392E92EgaGgaA1111B.1.621.10.005564
ORF1ab/nsp392E92DgaGgaT1010AY.1030.000062
ORF1ab/nsp392E92GgAggGg1010AY.40.000016
ORF1ab/nsp392E92GgAggGg1010AY.440.000061
ORF1ab/nsp392E92DgaGgaT1010B.1.1.3060.004384
ORF1ab/nsp392E92DgaGgaT1010B.1.177.440.005189
ORF1ab/nsp392E92EgaGgaA1010B.1.3510.000297
ORF1ab/nsp392E92DgaGgaT1010C.50.909091
ORF1ab/nsp392E92EgaGgaA99B.1.2210.000639
ORF1ab/nsp392E92EgaGgaA99B.1.617.20.000034
ORF1ab/nsp392E92DgaGgaT88AY.430.000035
ORF1ab/nsp392E92DgaGgaT88B.10.000073
ORF1ab/nsp392E92XGagTag77All0.000001
ORF1ab/nsp392E92VgAggTg77AY.320.003727
ORF1ab/nsp392E92DgaGgaT77AY.390.000173
ORF1ab/nsp392E92KGagAag77AY.9.20.000257
ORF1ab/nsp392E92DgaGgaT77B.1.5260.000165
ORF1ab/nsp392E92del1gaGga-56All0.000001
ORF1ab/nsp392E92del1gAgg-g16All0
ORF1ab/nsp392E92AgAggCg66AY.5.40.00166
ORF1ab/nsp392E92DgaGgaT66B.1.1.10.00196
ORF1ab/nsp392E92KGagAag66B.1.1.2860.017391
ORF1ab/nsp392E92delGAG---66B.1.1.70.000005
ORF1ab/nsp392E92KGagAag66B.1.1.70.000005
ORF1ab/nsp392E92GgAggGg66B.1.4290.000141
ORF1ab/nsp392E92FGAGTTC35All0.000001
ORF1ab/nsp392E92SGAGTCC35All0.000001
ORF1ab/nsp392E92FGAGTTT25All0
ORF1ab/nsp392E92SGAGTCT25All0
ORF1ab/nsp392E92EgaGgaA55B.10.000046
ORF1ab/nsp392E92DgaGgaT55B.1.10.000091
ORF1ab/nsp392E92DgaGgaT55B.1.1600.000156
ORF1ab/nsp392E92EgaGgaA55B.1.20.000044
ORF1ab/nsp392E92VgAggTg55B.1.3890.00501
ORF1ab/nsp392E92GgAggGg55B.1.617.20.000019
ORF1ab/nsp392E92DgaGgaT55B.1.6230.002682
ORF1ab/nsp392E92TGAGACT240.111111
ORF1ab/nsp392E92TGAGACC240.111111
ORF1ab/nsp392E92FGAGTTC240.111111
ORF1ab/nsp392E92IGAGATC240.111111
ORF1ab/nsp392E92SGAGTCT240.111111
ORF1ab/nsp392E92FGAGTTT240.111111
ORF1ab/nsp392E92SGAGTCC240.111111
ORF1ab/nsp392E92IGAGATT240.111111
ORF1ab/nsp392E92IGAGATT24All0
ORF1ab/nsp392E92TGAGACT24All0
ORF1ab/nsp392E92IGAGATC24All0
ORF1ab/nsp392E92TGAGACC24All0
ORF1ab/nsp392E92DgaGgaT44AY.250.000024
ORF1ab/nsp392E92EgaGgaA44AY.40.000006
ORF1ab/nsp392E92EgaGgaA44AY.46.40.000658
ORF1ab/nsp392E92KGagAag44B.10.000037
ORF1ab/nsp392E92delGAG---44B.10.000037
ORF1ab/nsp392E92AgAggCg44B.1.1.70.000004
ORF1ab/nsp392E92DgaGgaT44B.1.2210.000284
ORF1ab/nsp392E92DgaGgaT44B.1.2340.000528
ORF1ab/nsp392E92EgaGgaA44B.1.4290.000094
ORF1ab/nsp392E92DgaGgaT44B.1.6370.000292
ORF1ab/nsp392E92QGagCag33All0.000001
ORF1ab/nsp392E92VgAggTg33AY.1020.00008
ORF1ab/nsp392E92DgaGgaT33AY.1020.00008
ORF1ab/nsp392E92DgaGgaT33AY.1190.000106
ORF1ab/nsp392E92DgaGgaT33AY.140.000264
ORF1ab/nsp392E92KGagAag33AY.230.000209
ORF1ab/nsp392E92EgaGgaA33AY.30.00003
ORF1ab/nsp392E92DgaGgaT33AY.30.00003
ORF1ab/nsp392E92GgAggGg33AY.420.000121
ORF1ab/nsp392E92delGAG---33B.1.1.330.001263
ORF1ab/nsp392E92DgaGgaT33B.1.1.4130.02069
ORF1ab/nsp392E92DgaGgaT33B.1.1770.00004
ORF1ab/nsp392E92GgAggGg33B.1.20.000026
ORF1ab/nsp392E92GgAggGg33B.1.3510.000089
ORF1ab/nsp392E92EgaGgaA33B.1.3990.005803
ORF1ab/nsp392E92DgaGgaT33B.1.4800.007463
ORF1ab/nsp392E92KGagAag33B.1.6090.001438
ORF1ab/nsp392E92KGagAag33B.1.617.20.000011
ORF1ab/nsp392E92delGAG---220.111111
ORF1ab/nsp392E92LGAgTTg220.111111
ORF1ab/nsp392E92MGAgATg220.111111
ORF1ab/nsp392E92LGAgTTg22All0
ORF1ab/nsp392E92YGaGTaC22All0
ORF1ab/nsp392E92RGAgAGg22All0
ORF1ab/nsp392E92MGAgATg22All0
ORF1ab/nsp392E92del2GAg--g12All0
ORF1ab/nsp392E92del2gAGg--12All0
ORF1ab/nsp392E92DgaGgaT22AY.1000.000092
ORF1ab/nsp392E92EgaGgaA22AY.120.10.000642
ORF1ab/nsp392E92DgaGgaT22AY.200.000078
ORF1ab/nsp392E92GgAggGg22AY.230.000139
ORF1ab/nsp392E92VgAggTg22AY.390.000049
ORF1ab/nsp392E92delGAG---22AY.430.000009
ORF1ab/nsp392E92EgaGgaA22AY.440.000012
ORF1ab/nsp392E92DgaGgaT22AY.50.000041
ORF1ab/nsp392E92AgAggCg22AY.670.000929
ORF1ab/nsp392E92EgaGgaA22AY.98.10.000097
ORF1ab/nsp392E92DgaGgaT22AZ.20.001642
ORF1ab/nsp392E92GgAggGg22B.10.000018
ORF1ab/nsp392E92VgAggTg22B.10.000018
ORF1ab/nsp392E92GgAggGg22B.1.10.000036
ORF1ab/nsp392E92delGAG---22B.1.1.3480.001592
ORF1ab/nsp392E92DgaGgaC12B.1.1.390.00051
ORF1ab/nsp392E92DgaGgaT12B.1.1.390.00051
ORF1ab/nsp392E92KGagAag22B.1.1600.000062
ORF1ab/nsp392E92DgaGgaT22B.1.1890.008584
ORF1ab/nsp392E92AgAggCg22B.1.2210.000142
ORF1ab/nsp392E92KGagAag22B.1.2210.000142
ORF1ab/nsp392E92EgaGgaA22B.1.2580.000133
ORF1ab/nsp392E92DgaGgaT22B.1.3110.000549
ORF1ab/nsp392E92DgaGgaT22B.1.36.290.001035
ORF1ab/nsp392E92DgaGgaT22B.1.4290.000047
ORF1ab/nsp392E92DgaGgaT22B.1.5380.016129
ORF1ab/nsp392E92GgAggGg22B.1.5580.009132
ORF1ab/nsp392E92delGAG---22B.1.617.20.000008
ORF1ab/nsp392E92delGAG---22N.60.014184
ORF1ab/nsp392E92delGAG---22P.10.000032
ORF1ab/nsp392E92GgAggGg22R.10.00018
ORF1ab/nsp392E92GgAggGg110.055556
ORF1ab/nsp392E92VgAggTg11A.20.000662
ORF1ab/nsp392E92DgaGgaT11A.23.10.000704
ORF1ab/nsp392E92EgaGgaA11AE.80.000489
ORF1ab/nsp392E92PGAGCCC11All0
ORF1ab/nsp392E92NGaGAaT11All0
ORF1ab/nsp392E92delGAG---11AY.1000.000046
ORF1ab/nsp392E92EgaGgaA11AY.1020.000027
ORF1ab/nsp392E92DgaGgaT11AY.1130.000142
ORF1ab/nsp392E92GgAggGg11AY.1140.000231
ORF1ab/nsp392E92DgaGgaT11AY.1160.000287
ORF1ab/nsp392E92DgaGgaT11AY.1170.000085
ORF1ab/nsp392E92GgAggGg11AY.1170.000085
ORF1ab/nsp392E92EgaGgaA11AY.1180.000063
ORF1ab/nsp392E92EgaGgaA11AY.160.00038
ORF1ab/nsp392E92GgAGgGA11AY.200.000039
ORF1ab/nsp392E92delGAG---11AY.250.000006
ORF1ab/nsp392E92XGagTag11AY.250.000006
ORF1ab/nsp392E92EgaGgaA11AY.29.10.000221
ORF1ab/nsp392E92del2gAGg--11AY.30.00001
ORF1ab/nsp392E92GgAggGg11AY.30.00001
ORF1ab/nsp392E92KGagAag11AY.320.000532
ORF1ab/nsp392E92DgaGgaT11AY.39.10.00004
ORF1ab/nsp392E92KGagAag11AY.40.000002
ORF1ab/nsp392E92VgAggTg11AY.40.000002
ORF1ab/nsp392E92DgaGgaT11AY.4.50.000107
ORF1ab/nsp392E92delGAG---11AY.420.00004
ORF1ab/nsp392E92DgaGgaT11AY.420.00004
ORF1ab/nsp392E92KGagAag11AY.430.000004
ORF1ab/nsp392E92QGagCag11AY.440.000006
ORF1ab/nsp392E92KGagAag11AY.440.000006
ORF1ab/nsp392E92EgaGgaA11AY.450.000122
ORF1ab/nsp392E92delGAG---11AY.460.000104
ORF1ab/nsp392E92DgaGgaT11AY.46.60.000072
ORF1ab/nsp392E92AgAggCg11AY.50.000021
ORF1ab/nsp392E92EgaGgaA11AY.5.30.000337
ORF1ab/nsp392E92GgAggGg11AY.5.40.000277
ORF1ab/nsp392E92EgaGgaA11AY.520.000814
ORF1ab/nsp392E92GgAggGg11AY.60.000041
ORF1ab/nsp392E92GgAggGg11AY.610.000105
ORF1ab/nsp392E92KGagAag11AY.610.000105
ORF1ab/nsp392E92EgaGgaA11AY.750.000056
ORF1ab/nsp392E92DgaGgaT11AY.75.10.00018
ORF1ab/nsp392E92VgAggTg11AY.850.000427
ORF1ab/nsp392E92EgaGgaA11AY.880.000884
ORF1ab/nsp392E92KGagAag11AY.90.000068
ORF1ab/nsp392E92DgaGgaT11AY.9.20.000037
ORF1ab/nsp392E92EgaGgaA11AY.910.00073
ORF1ab/nsp392E92delGAG---11AY.990.001049
ORF1ab/nsp392E92GgAggGg11AY.99.20.000092
ORF1ab/nsp392E92delGAG---11AZ.20.000821
ORF1ab/nsp392E92del1gaGga-11B0.000128
ORF1ab/nsp392E92XGagTag11B.10.000009
ORF1ab/nsp392E92PGAGCCC11B.10.000009
ORF1ab/nsp392E92FGAGTTC11B.1.10.000018
ORF1ab/nsp392E92YGaGTaC11B.1.10.000018
ORF1ab/nsp392E92KGagAag11B.1.10.000018
ORF1ab/nsp392E92SGAGTCC11B.1.10.000018
ORF1ab/nsp392E92delGAG---11B.1.10.000018
ORF1ab/nsp392E92EgaGgaA11B.1.10.000018
ORF1ab/nsp392E92del1gaGga-11B.1.10.000018
ORF1ab/nsp392E92DgaGgaT11B.1.1.1740.003378
ORF1ab/nsp392E92VgAggTg11B.1.1.1940.00495
ORF1ab/nsp392E92EgaGgaA11B.1.1.2220.000204
ORF1ab/nsp392E92KGagAag11B.1.1.2220.000204
ORF1ab/nsp392E92DgaGgaT11B.1.1.250.000569
ORF1ab/nsp392E92GgAggGg11B.1.1.280.000311
ORF1ab/nsp392E92AgAggCg11B.1.1.280.000311
ORF1ab/nsp392E92DgaGgaT11B.1.1.280.000311
ORF1ab/nsp392E92DgaGgaT11B.1.1.3160.000925
ORF1ab/nsp392E92DgaGgaT11B.1.1.3480.000796
ORF1ab/nsp392E92DgaGgaT11B.1.1.3560.008547
ORF1ab/nsp392E92QGagCag11B.1.1.390.00051
ORF1ab/nsp392E92EgaGgaA11B.1.1.3970.002252
ORF1ab/nsp392E92KGagAag11B.1.1.4480.002033
ORF1ab/nsp392E92EgaGgaA11B.1.1.4640.001473
ORF1ab/nsp392E92GgAggGg11B.1.1.5190.00004
ORF1ab/nsp392E92XGagTag11B.1.1.610.008772
ORF1ab/nsp392E92EgaGgaA11B.1.1.630.000386
ORF1ab/nsp392E92del2GAg--g11B.1.1.70.000001
ORF1ab/nsp392E92XGagTag11B.1.1.70.000001
ORF1ab/nsp392E92VgAggTg11B.1.1.700.000341
ORF1ab/nsp392E92DgaGgaT11B.1.1030.019231
ORF1ab/nsp392E92DgaGgaT11B.1.1280.000635
ORF1ab/nsp392E92DgaGgaT11B.1.1310.008772
ORF1ab/nsp392E92DgaGgaT11B.1.160.160.000929
ORF1ab/nsp392E92delGAG---11B.1.160.160.000929
ORF1ab/nsp392E92delGAG---11B.1.177.540.000606
ORF1ab/nsp392E92GgAggGg11B.1.177.770.000726
ORF1ab/nsp392E92DgaGgaT11B.1.177.860.000183
ORF1ab/nsp392E92del1gaGga-11B.1.177.860.000183
ORF1ab/nsp392E92XGagTag11B.1.20.000009
ORF1ab/nsp392E92del1gaGga-11B.1.20.000009
ORF1ab/nsp392E92KGagAag11B.1.20.000009
ORF1ab/nsp392E92NGaGAaT11B.1.20.000009
ORF1ab/nsp392E92delGAG---11B.1.20.000009
ORF1ab/nsp392E92AgAggCg11B.1.20.000009
ORF1ab/nsp392E92KGagAag11B.1.2340.000132
ORF1ab/nsp392E92AgAggCg11B.1.2400.000216
ORF1ab/nsp392E92DgaGgaT11B.1.2400.000216
ORF1ab/nsp392E92DgaGgaC11B.1.3400.004292
ORF1ab/nsp392E92delGAG---11B.1.3490.000715
ORF1ab/nsp392E92DgaGgaT11B.1.3510.00003
ORF1ab/nsp392E92XGagTag11B.1.3560.001727
ORF1ab/nsp392E92GgAGgGT11B.1.3770.004566
ORF1ab/nsp392E92DgaGgaT11B.1.4080.00369
ORF1ab/nsp392E92RGAgAGg11B.1.4160.001269
ORF1ab/nsp392E92delGAG---11B.1.416.10.001563
ORF1ab/nsp392E92delGAG---11B.1.4290.000024
ORF1ab/nsp392E92AgAggCg11B.1.4680.005714
ORF1ab/nsp392E92DgaGgaT11B.1.5240.001406
ORF1ab/nsp392E92EgaGgaA11B.1.5240.001406
ORF1ab/nsp392E92EgaGgaA11B.1.5460.003704
ORF1ab/nsp392E92EgaGgaA11B.1.5510.00129
ORF1ab/nsp392E92delGAG---11B.1.5610.000397
ORF1ab/nsp392E92RGAgAGg11B.1.5640.000426
ORF1ab/nsp392E92DgaGgaC11B.1.5750.000303
ORF1ab/nsp392E92delGAG---11B.1.5770.000687
ORF1ab/nsp392E92EgaGgaA11B.1.617.10.000129
ORF1ab/nsp392E92del1gAgg-g11B.1.617.20.000004
ORF1ab/nsp392E92YGaGTaC11B.1.617.20.000004
ORF1ab/nsp392E92EgaGgaA11B.1.619.10.000641
ORF1ab/nsp392E92EgaGgaA11B.1.6210.000089
ORF1ab/nsp392E92AgAggCg11B.30.000831
ORF1ab/nsp392E92del1gaGga-11B.390.002331
ORF1ab/nsp392E92QGagCag11C.10.002392
ORF1ab/nsp392E92GgAggGg11C.36.30.000567
ORF1ab/nsp392E92XGagTag11P.10.000016
ORF1ab/nsp392E92DgaGgaT11P.1.140.000048
ORF1ab/nsp392E92DgaGgaT11P.1.150.000232
ORF1ab/nsp392E92GgAggGg11P.1.150.000232
ORF1ab/nsp392E92KGagAag11P.20.000187
ORF1ab/nsp392E92GgAggGg11Q.80.000165