CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 92 | E92D | E910D | nonsyn | gaG | gaT | 501 | 495 | 0.988024 | 2993-2995 |
ORF1ab/nsp3 | 92 | E92D | E910D | nonsyn | gaG | gaC | 501 | 6 | 0.011976 | 2993-2995 |
ORF1ab/nsp3 | 92 | E92G | E910G | nonsyn | gAg | gGg | 306 | 304 | 0.993464 | 2993-2995 |
ORF1ab/nsp3 | 92 | E92G | E910G | nonsyn | gAG | gGT | 306 | 1 | 0.00326797 | 2993-2995 |
ORF1ab/nsp3 | 92 | E92G | E910G | nonsyn | gAG | gGA | 306 | 1 | 0.00326797 | 2993-2995 |
ORF1ab/nsp3 | 92 | E92K | E910K | nonsyn | Gag | Aag | 260 | 260 | 1 | 2993-2995 |
ORF1ab/nsp3 | 92 | E92E | E910E | syn | gaG | gaA | 190 | 190 | 1 | 2993-2995 |
ORF1ab/nsp3 | 92 | E92del | E910del | del | GAG | --- | 40 | 40 | 1 | 2993-2995 |
ORF1ab/nsp3 | 92 | E92V | E910V | nonsyn | gAg | gTg | 24 | 24 | 1 | 2993-2995 |
ORF1ab/nsp3 | 92 | E92A | E910A | nonsyn | gAg | gCg | 20 | 20 | 1 | 2993-2995 |
ORF1ab/nsp3 | 92 | E92X | E910X | nonsyn | Gag | Tag | 7 | 7 | 1 | 2993-2995 |
ORF1ab/nsp3 | 92 | E92del1 | E910del1 | del | gaG | ga- | 6 | 5 | 0.833333 | 2993-2995 |
ORF1ab/nsp3 | 92 | E92del1 | E910del1 | del | gAg | g-g | 6 | 1 | 0.166667 | 2993-2995 |
ORF1ab/nsp3 | 92 | E92F | E910F | nonsyn | GAG | TTC | 5 | 3 | 0.6 | 2993-2995 |
ORF1ab/nsp3 | 92 | E92S | E910S | nonsyn | GAG | TCC | 5 | 3 | 0.6 | 2993-2995 |
ORF1ab/nsp3 | 92 | E92F | E910F | nonsyn | GAG | TTT | 5 | 2 | 0.4 | 2993-2995 |
ORF1ab/nsp3 | 92 | E92S | E910S | nonsyn | GAG | TCT | 5 | 2 | 0.4 | 2993-2995 |
ORF1ab/nsp3 | 92 | E92T | E910T | nonsyn | GAG | ACC | 4 | 2 | 0.5 | 2993-2995 |
ORF1ab/nsp3 | 92 | E92T | E910T | nonsyn | GAG | ACT | 4 | 2 | 0.5 | 2993-2995 |
ORF1ab/nsp3 | 92 | E92I | E910I | nonsyn | GAG | ATT | 4 | 2 | 0.5 | 2993-2995 |
ORF1ab/nsp3 | 92 | E92I | E910I | nonsyn | GAG | ATC | 4 | 2 | 0.5 | 2993-2995 |
ORF1ab/nsp3 | 92 | E92Q | E910Q | nonsyn | Gag | Cag | 3 | 3 | 1 | 2993-2995 |
ORF1ab/nsp3 | 92 | E92Y | E910Y | nonsyn | GaG | TaC | 2 | 2 | 1 | 2993-2995 |
ORF1ab/nsp3 | 92 | E92L | E910L | nonsyn | GAg | TTg | 2 | 2 | 1 | 2993-2995 |
ORF1ab/nsp3 | 92 | E92R | E910R | nonsyn | GAg | AGg | 2 | 2 | 1 | 2993-2995 |
ORF1ab/nsp3 | 92 | E92M | E910M | nonsyn | GAg | ATg | 2 | 2 | 1 | 2993-2995 |
ORF1ab/nsp3 | 92 | E92del2 | E910del2 | del | gAG | g-- | 2 | 1 | 0.5 | 2993-2995 |
ORF1ab/nsp3 | 92 | E92del2 | E910del2 | del | GAg | --g | 2 | 1 | 0.5 | 2993-2995 |
ORF1ab/nsp3 | 92 | E92P | E910P | nonsyn | GAG | CCC | 1 | 1 | 1 | 2993-2995 |
ORF1ab/nsp3 | 92 | E92N | E910N | nonsyn | GaG | AaT | 1 | 1 | 1 | 2993-2995 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 495 | 501 | All | 0.000095 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaC | 6 | 501 | All | 0.000001 |
ORF1ab/nsp3 | 92 | E92G | gAg | gGg | 304 | 306 | All | 0.000058 |
ORF1ab/nsp3 | 92 | E92G | gAG | gGT | 1 | 306 | All | 0 |
ORF1ab/nsp3 | 92 | E92G | gAG | gGA | 1 | 306 | All | 0 |
ORF1ab/nsp3 | 92 | E92K | Gag | Aag | 260 | 260 | All | 0.00005 |
ORF1ab/nsp3 | 92 | E92K | Gag | Aag | 212 | 212 | B.1.177 | 0.002792 |
ORF1ab/nsp3 | 92 | E92E | gaG | gaA | 190 | 190 | All | 0.000036 |
ORF1ab/nsp3 | 92 | E92G | gAg | gGg | 169 | 169 | B.1.177.70 | 1 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 99 | 99 | AY.4 | 0.000154 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 55 | 56 | AY.44 | 0.000335 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaC | 1 | 56 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 92 | E92E | gaG | gaA | 46 | 46 | B.1.1.7 | 0.000041 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 43 | 44 | B.1.1.7 | 0.000038 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaC | 1 | 44 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 92 | E92del | GAG | --- | 40 | 40 | All | 0.000008 |
ORF1ab/nsp3 | 92 | E92G | gAg | gGg | 35 | 35 | AY.43 | 0.000155 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 28 | 28 | B.1.617.2 | 0.000105 |
ORF1ab/nsp3 | 92 | E92V | gAg | gTg | 24 | 24 | All | 0.000005 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 23 | 23 | B.1.349 | 0.01644 |
ORF1ab/nsp3 | 92 | E92G | gAg | gGg | 22 | 22 | B.1.1.7 | 0.00002 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 21 | 21 | AY.4.2 | 0.000455 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 21 | 21 | AY.86 | 0.017427 |
ORF1ab/nsp3 | 92 | E92A | gAg | gCg | 20 | 20 | All | 0.000004 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 19 | 20 | P.1 | 0.000299 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaC | 1 | 20 | P.1 | 0.000016 |
ORF1ab/nsp3 | 92 | E92E | gaG | gaA | 17 | 17 | C.18 | 0.044041 |
ORF1ab/nsp3 | 92 | E92E | gaG | gaA | 15 | 15 | AY.43 | 0.000066 |
ORF1ab/nsp3 | 92 | E92E | gaG | gaA | 15 | 15 | P.1 | 0.000236 |
ORF1ab/nsp3 | 92 | E92G | gAg | gGg | 14 | 14 | B.1.311 | 0.003844 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 12 | 12 | AY.107 | 0.005592 |
ORF1ab/nsp3 | 92 | E92E | gaG | gaA | 11 | 11 | B.1.621.1 | 0.005564 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 10 | 10 | AY.103 | 0.000062 |
ORF1ab/nsp3 | 92 | E92G | gAg | gGg | 10 | 10 | AY.4 | 0.000016 |
ORF1ab/nsp3 | 92 | E92G | gAg | gGg | 10 | 10 | AY.44 | 0.000061 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 10 | 10 | B.1.1.306 | 0.004384 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 10 | 10 | B.1.177.44 | 0.005189 |
ORF1ab/nsp3 | 92 | E92E | gaG | gaA | 10 | 10 | B.1.351 | 0.000297 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 10 | 10 | C.5 | 0.909091 |
ORF1ab/nsp3 | 92 | E92E | gaG | gaA | 9 | 9 | B.1.221 | 0.000639 |
ORF1ab/nsp3 | 92 | E92E | gaG | gaA | 9 | 9 | B.1.617.2 | 0.000034 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 8 | 8 | AY.43 | 0.000035 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 8 | 8 | B.1 | 0.000073 |
ORF1ab/nsp3 | 92 | E92X | Gag | Tag | 7 | 7 | All | 0.000001 |
ORF1ab/nsp3 | 92 | E92V | gAg | gTg | 7 | 7 | AY.32 | 0.003727 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 7 | 7 | AY.39 | 0.000173 |
ORF1ab/nsp3 | 92 | E92K | Gag | Aag | 7 | 7 | AY.9.2 | 0.000257 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 7 | 7 | B.1.526 | 0.000165 |
ORF1ab/nsp3 | 92 | E92del1 | gaG | ga- | 5 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 92 | E92del1 | gAg | g-g | 1 | 6 | All | 0 |
ORF1ab/nsp3 | 92 | E92A | gAg | gCg | 6 | 6 | AY.5.4 | 0.00166 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 6 | 6 | B.1.1.1 | 0.00196 |
ORF1ab/nsp3 | 92 | E92K | Gag | Aag | 6 | 6 | B.1.1.286 | 0.017391 |
ORF1ab/nsp3 | 92 | E92del | GAG | --- | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 92 | E92K | Gag | Aag | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 92 | E92G | gAg | gGg | 6 | 6 | B.1.429 | 0.000141 |
ORF1ab/nsp3 | 92 | E92F | GAG | TTC | 3 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 92 | E92S | GAG | TCC | 3 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 92 | E92F | GAG | TTT | 2 | 5 | All | 0 |
ORF1ab/nsp3 | 92 | E92S | GAG | TCT | 2 | 5 | All | 0 |
ORF1ab/nsp3 | 92 | E92E | gaG | gaA | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 5 | 5 | B.1.160 | 0.000156 |
ORF1ab/nsp3 | 92 | E92E | gaG | gaA | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp3 | 92 | E92V | gAg | gTg | 5 | 5 | B.1.389 | 0.00501 |
ORF1ab/nsp3 | 92 | E92G | gAg | gGg | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 5 | 5 | B.1.623 | 0.002682 |
ORF1ab/nsp3 | 92 | E92T | GAG | ACT | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 92 | E92T | GAG | ACC | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 92 | E92F | GAG | TTC | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 92 | E92I | GAG | ATC | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 92 | E92S | GAG | TCT | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 92 | E92F | GAG | TTT | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 92 | E92S | GAG | TCC | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 92 | E92I | GAG | ATT | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 92 | E92I | GAG | ATT | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 92 | E92T | GAG | ACT | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 92 | E92I | GAG | ATC | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 92 | E92T | GAG | ACC | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp3 | 92 | E92E | gaG | gaA | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 92 | E92E | gaG | gaA | 4 | 4 | AY.46.4 | 0.000658 |
ORF1ab/nsp3 | 92 | E92K | Gag | Aag | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 92 | E92del | GAG | --- | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 92 | E92A | gAg | gCg | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 4 | 4 | B.1.221 | 0.000284 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 4 | 4 | B.1.234 | 0.000528 |
ORF1ab/nsp3 | 92 | E92E | gaG | gaA | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 4 | 4 | B.1.637 | 0.000292 |
ORF1ab/nsp3 | 92 | E92Q | Gag | Cag | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 92 | E92V | gAg | gTg | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp3 | 92 | E92K | Gag | Aag | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp3 | 92 | E92E | gaG | gaA | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 92 | E92G | gAg | gGg | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp3 | 92 | E92del | GAG | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 3 | 3 | B.1.1.413 | 0.02069 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp3 | 92 | E92G | gAg | gGg | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 92 | E92G | gAg | gGg | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp3 | 92 | E92E | gaG | gaA | 3 | 3 | B.1.399 | 0.005803 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 3 | 3 | B.1.480 | 0.007463 |
ORF1ab/nsp3 | 92 | E92K | Gag | Aag | 3 | 3 | B.1.609 | 0.001438 |
ORF1ab/nsp3 | 92 | E92K | Gag | Aag | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 92 | E92del | GAG | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 92 | E92L | GAg | TTg | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 92 | E92M | GAg | ATg | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 92 | E92L | GAg | TTg | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 92 | E92Y | GaG | TaC | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 92 | E92R | GAg | AGg | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 92 | E92M | GAg | ATg | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 92 | E92del2 | GAg | --g | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 92 | E92del2 | gAG | g-- | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp3 | 92 | E92E | gaG | gaA | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp3 | 92 | E92G | gAg | gGg | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 92 | E92V | gAg | gTg | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 92 | E92del | GAG | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 92 | E92E | gaG | gaA | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 92 | E92A | gAg | gCg | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp3 | 92 | E92E | gaG | gaA | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 2 | 2 | AZ.2 | 0.001642 |
ORF1ab/nsp3 | 92 | E92G | gAg | gGg | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 92 | E92V | gAg | gTg | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 92 | E92G | gAg | gGg | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 92 | E92del | GAG | --- | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaC | 1 | 2 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 1 | 2 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 92 | E92K | Gag | Aag | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 2 | 2 | B.1.189 | 0.008584 |
ORF1ab/nsp3 | 92 | E92A | gAg | gCg | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp3 | 92 | E92K | Gag | Aag | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp3 | 92 | E92E | gaG | gaA | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 2 | 2 | B.1.538 | 0.016129 |
ORF1ab/nsp3 | 92 | E92G | gAg | gGg | 2 | 2 | B.1.558 | 0.009132 |
ORF1ab/nsp3 | 92 | E92del | GAG | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 92 | E92del | GAG | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp3 | 92 | E92del | GAG | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 92 | E92G | gAg | gGg | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp3 | 92 | E92G | gAg | gGg | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 92 | E92V | gAg | gTg | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp3 | 92 | E92E | gaG | gaA | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp3 | 92 | E92P | GAG | CCC | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 92 | E92N | GaG | AaT | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 92 | E92del | GAG | --- | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 92 | E92E | gaG | gaA | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 92 | E92G | gAg | gGg | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 92 | E92G | gAg | gGg | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 92 | E92E | gaG | gaA | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 92 | E92E | gaG | gaA | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 92 | E92G | gAG | gGA | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 92 | E92del | GAG | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 92 | E92X | Gag | Tag | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 92 | E92E | gaG | gaA | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 92 | E92del2 | gAG | g-- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 92 | E92G | gAg | gGg | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 92 | E92K | Gag | Aag | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 92 | E92K | Gag | Aag | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 92 | E92V | gAg | gTg | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 92 | E92del | GAG | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 92 | E92K | Gag | Aag | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 92 | E92Q | Gag | Cag | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 92 | E92K | Gag | Aag | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 92 | E92E | gaG | gaA | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 92 | E92del | GAG | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 92 | E92A | gAg | gCg | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 92 | E92E | gaG | gaA | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 92 | E92G | gAg | gGg | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 92 | E92E | gaG | gaA | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 92 | E92G | gAg | gGg | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 92 | E92G | gAg | gGg | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 92 | E92K | Gag | Aag | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 92 | E92E | gaG | gaA | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 92 | E92V | gAg | gTg | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 92 | E92E | gaG | gaA | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp3 | 92 | E92K | Gag | Aag | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 92 | E92E | gaG | gaA | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 92 | E92del | GAG | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 92 | E92G | gAg | gGg | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 92 | E92del | GAG | --- | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 92 | E92del1 | gaG | ga- | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 92 | E92X | Gag | Tag | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 92 | E92P | GAG | CCC | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 92 | E92F | GAG | TTC | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 92 | E92Y | GaG | TaC | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 92 | E92K | Gag | Aag | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 92 | E92S | GAG | TCC | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 92 | E92del | GAG | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 92 | E92E | gaG | gaA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 92 | E92del1 | gaG | ga- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp3 | 92 | E92V | gAg | gTg | 1 | 1 | B.1.1.194 | 0.00495 |
ORF1ab/nsp3 | 92 | E92E | gaG | gaA | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 92 | E92K | Gag | Aag | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 92 | E92G | gAg | gGg | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 92 | E92A | gAg | gCg | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 1 | 1 | B.1.1.356 | 0.008547 |
ORF1ab/nsp3 | 92 | E92Q | Gag | Cag | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 92 | E92E | gaG | gaA | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp3 | 92 | E92K | Gag | Aag | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp3 | 92 | E92E | gaG | gaA | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp3 | 92 | E92G | gAg | gGg | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 92 | E92X | Gag | Tag | 1 | 1 | B.1.1.61 | 0.008772 |
ORF1ab/nsp3 | 92 | E92E | gaG | gaA | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 92 | E92del2 | GAg | --g | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 92 | E92X | Gag | Tag | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 92 | E92V | gAg | gTg | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 1 | 1 | B.1.103 | 0.019231 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 1 | 1 | B.1.131 | 0.008772 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp3 | 92 | E92del | GAG | --- | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp3 | 92 | E92del | GAG | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 92 | E92G | gAg | gGg | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 92 | E92del1 | gaG | ga- | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 92 | E92X | Gag | Tag | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 92 | E92del1 | gaG | ga- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 92 | E92K | Gag | Aag | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 92 | E92N | GaG | AaT | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 92 | E92del | GAG | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 92 | E92A | gAg | gCg | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 92 | E92K | Gag | Aag | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 92 | E92A | gAg | gCg | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaC | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp3 | 92 | E92del | GAG | --- | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 92 | E92X | Gag | Tag | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp3 | 92 | E92G | gAG | gGT | 1 | 1 | B.1.377 | 0.004566 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 1 | 1 | B.1.408 | 0.00369 |
ORF1ab/nsp3 | 92 | E92R | GAg | AGg | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 92 | E92del | GAG | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 92 | E92del | GAG | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 92 | E92A | gAg | gCg | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp3 | 92 | E92E | gaG | gaA | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp3 | 92 | E92E | gaG | gaA | 1 | 1 | B.1.546 | 0.003704 |
ORF1ab/nsp3 | 92 | E92E | gaG | gaA | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp3 | 92 | E92del | GAG | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 92 | E92R | GAg | AGg | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaC | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 92 | E92del | GAG | --- | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 92 | E92E | gaG | gaA | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 92 | E92del1 | gAg | g-g | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 92 | E92Y | GaG | TaC | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 92 | E92E | gaG | gaA | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp3 | 92 | E92E | gaG | gaA | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 92 | E92A | gAg | gCg | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp3 | 92 | E92del1 | gaG | ga- | 1 | 1 | B.39 | 0.002331 |
ORF1ab/nsp3 | 92 | E92Q | Gag | Cag | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp3 | 92 | E92G | gAg | gGg | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp3 | 92 | E92X | Gag | Tag | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 92 | E92D | gaG | gaT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 92 | E92G | gAg | gGg | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 92 | E92K | Gag | Aag | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 92 | E92G | gAg | gGg | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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