CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 916 & Codon = Cac

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3916Y916HY1734HnonsynTacCac38438415465-5467

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3916Y916HTacCac384384All0.000073
ORF1ab/nsp3916Y916HTacCac167167B.1.1.3631
ORF1ab/nsp3916Y916HTacCac5454B.1.617.20.000203
ORF1ab/nsp3916Y916HTacCac2222AY.40.000034
ORF1ab/nsp3916Y916HTacCac2121B.1.1.70.000019
ORF1ab/nsp3916Y916HTacCac2020AY.290.000315
ORF1ab/nsp3916Y916HTacCac88AY.430.000035
ORF1ab/nsp3916Y916HTacCac88B.10.000073
ORF1ab/nsp3916Y916HTacCac66AY.390.000148
ORF1ab/nsp3916Y916HTacCac66B.1.1.2840.000644
ORF1ab/nsp3916Y916HTacCac66B.1.1770.000079
ORF1ab/nsp3916Y916HTacCac55AY.610.000524
ORF1ab/nsp3916Y916HTacCac44AY.250.000024
ORF1ab/nsp3916Y916HTacCac44AY.330.000267
ORF1ab/nsp3916Y916HTacCac44AY.440.000024
ORF1ab/nsp3916Y916HTacCac33AY.1190.000106
ORF1ab/nsp3916Y916HTacCac33B.1.10.000054
ORF1ab/nsp3916Y916HTacCac33B.1.4270.000151
ORF1ab/nsp3916Y916HTacCac22AY.160.000759
ORF1ab/nsp3916Y916HTacCac22AY.260.000057
ORF1ab/nsp3916Y916HTacCac22AY.30.00002
ORF1ab/nsp3916Y916HTacCac22AY.470.000062
ORF1ab/nsp3916Y916HTacCac22AY.70.000392
ORF1ab/nsp3916Y916HTacCac22B.1.5250.000226
ORF1ab/nsp3916Y916HTacCac22B.1.5890.015152
ORF1ab/nsp3916Y916HTacCac11AY.1000.000046
ORF1ab/nsp3916Y916HTacCac11AY.1020.000027
ORF1ab/nsp3916Y916HTacCac11AY.1030.000006
ORF1ab/nsp3916Y916HTacCac11AY.1130.000142
ORF1ab/nsp3916Y916HTacCac11AY.29.10.000221
ORF1ab/nsp3916Y916HTacCac11AY.420.00004
ORF1ab/nsp3916Y916HTacCac11AY.450.000122
ORF1ab/nsp3916Y916HTacCac11AY.46.10.001027
ORF1ab/nsp3916Y916HTacCac11AY.46.20.000635
ORF1ab/nsp3916Y916HTacCac11AY.50.000021
ORF1ab/nsp3916Y916HTacCac11AY.7.20.000559
ORF1ab/nsp3916Y916HTacCac11B.1.1.2140.000055
ORF1ab/nsp3916Y916HTacCac11B.1.1.290.010309
ORF1ab/nsp3916Y916HTacCac11B.1.1.390.00051
ORF1ab/nsp3916Y916HTacCac11B.1.177.230.003236
ORF1ab/nsp3916Y916HTacCac11B.1.177.530.002392
ORF1ab/nsp3916Y916HTacCac11B.1.20.000009
ORF1ab/nsp3916Y916HTacCac11B.1.2580.000067
ORF1ab/nsp3916Y916HTacCac11B.1.3510.00003
ORF1ab/nsp3916Y916HTacCac11B.1.3910.001127
ORF1ab/nsp3916Y916HTacCac11B.1.3960.000706
ORF1ab/nsp3916Y916HTacCac11B.1.4290.000024
ORF1ab/nsp3916Y916HTacCac11B.1.4990.00105
ORF1ab/nsp3916Y916HTacCac11B.1.5750.000303
ORF1ab/nsp3916Y916HTacCac11B.1.6370.000073
ORF1ab/nsp3916Y916HTacCac11C.370.000116

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.