CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 915 | S915F | S1733F | nonsyn | AGt | TTt | 1607 | 1607 | 1 | 5462-5464 |
ORF1ab/nsp3 | 915 | S915R | S1733R | nonsyn | Agt | Cgt | 1074 | 1054 | 0.981378 | 5462-5464 |
ORF1ab/nsp3 | 915 | S915R | S1733R | nonsyn | agT | agG | 1074 | 11 | 0.0102421 | 5462-5464 |
ORF1ab/nsp3 | 915 | S915R | S1733R | nonsyn | agT | agA | 1074 | 7 | 0.00651769 | 5462-5464 |
ORF1ab/nsp3 | 915 | S915R | S1733R | nonsyn | AgT | CgA | 1074 | 2 | 0.0018622 | 5462-5464 |
ORF1ab/nsp3 | 915 | S915G | S1733G | nonsyn | Agt | Ggt | 506 | 506 | 1 | 5462-5464 |
ORF1ab/nsp3 | 915 | S915I | S1733I | nonsyn | aGt | aTt | 236 | 236 | 1 | 5462-5464 |
ORF1ab/nsp3 | 915 | S915N | S1733N | nonsyn | aGt | aAt | 93 | 93 | 1 | 5462-5464 |
ORF1ab/nsp3 | 915 | S915S | S1733S | syn | agT | agC | 69 | 69 | 1 | 5462-5464 |
ORF1ab/nsp3 | 915 | S915C | S1733C | nonsyn | Agt | Tgt | 34 | 34 | 1 | 5462-5464 |
ORF1ab/nsp3 | 915 | S915del | S1733del | del | AGT | --- | 31 | 31 | 1 | 5462-5464 |
ORF1ab/nsp3 | 915 | S915T | S1733T | nonsyn | aGt | aCt | 8 | 6 | 0.75 | 5462-5464 |
ORF1ab/nsp3 | 915 | S915T | S1733T | nonsyn | aGT | aCA | 8 | 2 | 0.25 | 5462-5464 |
ORF1ab/nsp3 | 915 | S915P | S1733P | nonsyn | AGT | CCA | 4 | 2 | 0.5 | 5462-5464 |
ORF1ab/nsp3 | 915 | S915P | S1733P | nonsyn | AGt | CCt | 4 | 2 | 0.5 | 5462-5464 |
ORF1ab/nsp3 | 915 | S915K | S1733K | nonsyn | aGT | aAA | 3 | 3 | 1 | 5462-5464 |
ORF1ab/nsp3 | 915 | S915del1 | S1733del1 | del | agT | ag- | 3 | 2 | 0.666667 | 5462-5464 |
ORF1ab/nsp3 | 915 | S915del1 | S1733del1 | del | Agt | -gt | 3 | 1 | 0.333333 | 5462-5464 |
ORF1ab/nsp3 | 915 | S915D | S1733D | nonsyn | AGt | GAt | 2 | 2 | 1 | 5462-5464 |
ORF1ab/nsp3 | 915 | S915X | S1733X | nonsyn | AgT | TgA | 1 | 1 | 1 | 5462-5464 |
ORF1ab/nsp3 | 915 | S915del2 | S1733del2 | del | AGt | --t | 1 | 1 | 1 | 5462-5464 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 915 | S915F | AGt | TTt | 1607 | 1607 | All | 0.000307 |
ORF1ab/nsp3 | 915 | S915F | AGt | TTt | 1546 | 1546 | B.1.258.11 | 0.612763 |
ORF1ab/nsp3 | 915 | S915R | Agt | Cgt | 1054 | 1074 | All | 0.000202 |
ORF1ab/nsp3 | 915 | S915R | agT | agG | 11 | 1074 | All | 0.000002 |
ORF1ab/nsp3 | 915 | S915R | agT | agA | 7 | 1074 | All | 0.000001 |
ORF1ab/nsp3 | 915 | S915R | AgT | CgA | 2 | 1074 | All | 0 |
ORF1ab/nsp3 | 915 | S915R | Agt | Cgt | 579 | 579 | AY.33 | 0.038664 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 506 | 506 | All | 0.000097 |
ORF1ab/nsp3 | 915 | S915R | Agt | Cgt | 367 | 367 | AY.3.1 | 0.03129 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 267 | 267 | A.2.5 | 0.133234 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 236 | 236 | All | 0.000045 |
ORF1ab/nsp3 | 915 | S915N | aGt | aAt | 93 | 93 | All | 0.000018 |
ORF1ab/nsp3 | 915 | S915S | agT | agC | 69 | 69 | All | 0.000013 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 50 | 50 | B.1.1.7 | 0.000045 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 41 | 41 | AY.4.2.1 | 0.006108 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 39 | 39 | B.1.1 | 0.000707 |
ORF1ab/nsp3 | 915 | S915C | Agt | Tgt | 34 | 34 | All | 0.000007 |
ORF1ab/nsp3 | 915 | S915del | AGT | --- | 31 | 31 | All | 0.000006 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 29 | 29 | AY.113 | 0.004129 |
ORF1ab/nsp3 | 915 | S915N | aGt | aAt | 29 | 29 | B.1.1.7 | 0.000026 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 29 | 29 | B.1.617.2 | 0.000109 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 27 | 27 | AY.4 | 0.000042 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 26 | 26 | AY.3 | 0.000259 |
ORF1ab/nsp3 | 915 | S915F | AGt | TTt | 26 | 26 | AY.44 | 0.000158 |
ORF1ab/nsp3 | 915 | S915R | Agt | Cgt | 23 | 23 | AY.43 | 0.000102 |
ORF1ab/nsp3 | 915 | S915R | Agt | Cgt | 20 | 23 | B.1.1.7 | 0.000018 |
ORF1ab/nsp3 | 915 | S915R | agT | agG | 2 | 23 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 915 | S915R | agT | agA | 1 | 23 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 20 | 20 | AY.43 | 0.000089 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 17 | 17 | AY.39 | 0.00042 |
ORF1ab/nsp3 | 915 | S915F | AGt | TTt | 16 | 16 | B.1.1.7 | 0.000014 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 15 | 15 | B.1.1.7 | 0.000013 |
ORF1ab/nsp3 | 915 | S915R | Agt | Cgt | 13 | 13 | B.1.617.2 | 0.000049 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 10 | 10 | A.2.5 | 0.00499 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 10 | 10 | AY.46.2 | 0.006353 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 10 | 10 | B.1.526 | 0.000235 |
ORF1ab/nsp3 | 915 | S915C | Agt | Tgt | 9 | 9 | AY.75 | 0.000504 |
ORF1ab/nsp3 | 915 | S915del | AGT | --- | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 915 | S915C | Agt | Tgt | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 915 | S915T | aGt | aCt | 6 | 8 | All | 0.000001 |
ORF1ab/nsp3 | 915 | S915T | aGT | aCA | 2 | 8 | All | 0 |
ORF1ab/nsp3 | 915 | S915S | agT | agC | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp3 | 915 | S915S | agT | agC | 8 | 8 | B.1.177 | 0.000105 |
ORF1ab/nsp3 | 915 | S915F | AGt | TTt | 8 | 8 | B.1.2 | 0.00007 |
ORF1ab/nsp3 | 915 | S915S | agT | agC | 7 | 7 | AY.43 | 0.000031 |
ORF1ab/nsp3 | 915 | S915N | aGt | aAt | 7 | 7 | B.1.1.216 | 0.006233 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 7 | 7 | B.1.36.8 | 0.007 |
ORF1ab/nsp3 | 915 | S915R | Agt | Cgt | 2 | 6 | 0.111111 | |
ORF1ab/nsp3 | 915 | S915R | AgT | CgA | 2 | 6 | 0.111111 | |
ORF1ab/nsp3 | 915 | S915R | agT | agA | 2 | 6 | 0.111111 | |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 6 | 6 | AY.20 | 0.000233 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp3 | 915 | S915N | aGt | aAt | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp3 | 915 | S915R | Agt | Cgt | 5 | 6 | AY.4 | 0.000008 |
ORF1ab/nsp3 | 915 | S915R | agT | agA | 1 | 6 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 6 | 6 | AY.46.4 | 0.000987 |
ORF1ab/nsp3 | 915 | S915N | aGt | aAt | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 6 | 6 | B.1.466.2 | 0.002347 |
ORF1ab/nsp3 | 915 | S915R | Agt | Cgt | 5 | 5 | B.1.416 | 0.006345 |
ORF1ab/nsp3 | 915 | S915N | aGt | aAt | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 5 | 5 | D.2 | 0.000375 |
ORF1ab/nsp3 | 915 | S915T | aGt | aCt | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 915 | S915P | AGt | CCt | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 915 | S915P | AGT | CCA | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 915 | S915T | aGT | aCA | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 915 | S915P | AGt | CCt | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 915 | S915P | AGT | CCA | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp3 | 915 | S915S | agT | agC | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp3 | 915 | S915R | Agt | Cgt | 4 | 4 | AY.14 | 0.000352 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp3 | 915 | S915R | Agt | Cgt | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp3 | 915 | S915N | aGt | aAt | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 915 | S915R | Agt | Cgt | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp3 | 915 | S915S | agT | agC | 4 | 4 | B.1.177.7 | 0.000659 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 4 | 4 | B.1.575 | 0.001214 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp3 | 915 | S915K | aGT | aAA | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 915 | S915del1 | agT | ag- | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 915 | S915del1 | Agt | -gt | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 915 | S915S | agT | agC | 3 | 3 | AY.104 | 0.005952 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 915 | S915N | aGt | aAt | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 915 | S915R | Agt | Cgt | 2 | 3 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 915 | S915R | agT | agG | 1 | 3 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 915 | S915R | Agt | Cgt | 3 | 3 | AY.69 | 0.00056 |
ORF1ab/nsp3 | 915 | S915C | Agt | Tgt | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 915 | S915N | aGt | aAt | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp3 | 915 | S915S | agT | agC | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 915 | S915S | agT | agC | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 915 | S915S | agT | agC | 3 | 3 | P.1.17 | 0.000485 |
ORF1ab/nsp3 | 915 | S915D | AGt | GAt | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 915 | S915D | AGt | GAt | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 915 | S915R | Agt | Cgt | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 915 | S915S | agT | agC | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp3 | 915 | S915R | Agt | Cgt | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp3 | 915 | S915R | Agt | Cgt | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 915 | S915N | aGt | aAt | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 915 | S915C | Agt | Tgt | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 915 | S915C | Agt | Tgt | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 915 | S915del | AGT | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 915 | S915R | agT | agG | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 915 | S915del | AGT | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 915 | S915T | aGt | aCt | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 915 | S915N | aGt | aAt | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 2 | 2 | AY.7 | 0.000392 |
ORF1ab/nsp3 | 915 | S915R | agT | agA | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 2 | 2 | AY.77 | 0.002255 |
ORF1ab/nsp3 | 915 | S915S | agT | agC | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 915 | S915K | aGT | aAA | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 915 | S915N | aGt | aAt | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 915 | S915F | AGt | TTt | 2 | 2 | B.1.177.6 | 0.001953 |
ORF1ab/nsp3 | 915 | S915C | Agt | Tgt | 2 | 2 | B.1.177.6 | 0.001953 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 2 | 2 | B.1.177.6 | 0.001953 |
ORF1ab/nsp3 | 915 | S915N | aGt | aAt | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 915 | S915F | AGt | TTt | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 915 | S915R | Agt | Cgt | 2 | 2 | B.1.265 | 0.002541 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 915 | S915del | AGT | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 915 | S915S | agT | agC | 2 | 2 | B.1.404 | 0.002604 |
ORF1ab/nsp3 | 915 | S915F | AGt | TTt | 2 | 2 | B.1.409 | 0.001563 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 2 | 2 | B.1.462 | 0.014493 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp3 | 915 | S915S | agT | agC | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp3 | 915 | S915del | AGT | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 2 | 2 | B.1.634 | 0.006849 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp3 | 915 | S915N | aGt | aAt | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 915 | S915S | agT | agC | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 915 | S915del | AGT | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp3 | 915 | S915X | AgT | TgA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 915 | S915del2 | AGt | --t | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 915 | S915S | agT | agC | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 915 | S915R | Agt | Cgt | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 915 | S915N | aGt | aAt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 915 | S915del | AGT | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 915 | S915R | Agt | Cgt | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 915 | S915N | aGt | aAt | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 915 | S915S | agT | agC | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 915 | S915N | aGt | aAt | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 915 | S915C | Agt | Tgt | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 915 | S915N | aGt | aAt | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 915 | S915R | agT | agG | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp3 | 915 | S915R | agT | agG | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 915 | S915N | aGt | aAt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 915 | S915R | Agt | Cgt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 915 | S915N | aGt | aAt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 915 | S915N | aGt | aAt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 915 | S915del | AGT | --- | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 915 | S915S | agT | agC | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 915 | S915R | Agt | Cgt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 915 | S915del | AGT | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 915 | S915C | Agt | Tgt | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 915 | S915S | agT | agC | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 915 | S915C | Agt | Tgt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 915 | S915F | AGt | TTt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 915 | S915del2 | AGt | --t | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 915 | S915S | agT | agC | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 915 | S915X | AgT | TgA | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 915 | S915S | agT | agC | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 915 | S915R | Agt | Cgt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 915 | S915R | Agt | Cgt | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 915 | S915N | aGt | aAt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 915 | S915N | aGt | aAt | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp3 | 915 | S915N | aGt | aAt | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 915 | S915R | Agt | Cgt | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 915 | S915N | aGt | aAt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 915 | S915R | Agt | Cgt | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 915 | S915del | AGT | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 915 | S915del | AGT | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 915 | S915N | aGt | aAt | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp3 | 915 | S915C | Agt | Tgt | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 915 | S915R | Agt | Cgt | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 915 | S915R | Agt | Cgt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 915 | S915N | aGt | aAt | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 915 | S915N | aGt | aAt | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 915 | S915R | Agt | Cgt | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 915 | S915del | AGT | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp3 | 915 | S915R | agT | agG | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 915 | S915S | agT | agC | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 915 | S915R | Agt | Cgt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 915 | S915del1 | agT | ag- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 915 | S915F | AGt | TTt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 915 | S915del | AGT | --- | 1 | 1 | B.1.1.142 | 0.017544 |
ORF1ab/nsp3 | 915 | S915S | agT | agC | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp3 | 915 | S915S | agT | agC | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp3 | 915 | S915S | agT | agC | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 915 | S915R | agT | agA | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp3 | 915 | S915N | aGt | aAt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 915 | S915del1 | Agt | -gt | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 915 | S915S | agT | agC | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 915 | S915C | Agt | Tgt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 915 | S915del | AGT | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 915 | S915S | agT | agC | 1 | 1 | B.1.160.19 | 0.035714 |
ORF1ab/nsp3 | 915 | S915N | aGt | aAt | 1 | 1 | B.1.160.30 | 0.002976 |
ORF1ab/nsp3 | 915 | S915C | Agt | Tgt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 915 | S915del | AGT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 915 | S915del1 | agT | ag- | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp3 | 915 | S915R | Agt | Cgt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 915 | S915del | AGT | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 915 | S915N | aGt | aAt | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp3 | 915 | S915K | aGT | aAA | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 915 | S915T | aGt | aCt | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 915 | S915S | agT | agC | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 915 | S915del | AGT | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 915 | S915C | Agt | Tgt | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 915 | S915del | AGT | --- | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp3 | 915 | S915R | agT | agG | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 915 | S915R | Agt | Cgt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 915 | S915N | aGt | aAt | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 915 | S915R | agT | agG | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 915 | S915S | agT | agC | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 915 | S915F | AGt | TTt | 1 | 1 | B.1.432 | 0.011236 |
ORF1ab/nsp3 | 915 | S915S | agT | agC | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp3 | 915 | S915R | agT | agG | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp3 | 915 | S915T | aGt | aCt | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp3 | 915 | S915N | aGt | aAt | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 915 | S915S | agT | agC | 1 | 1 | B.1.581 | 0.009434 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 915 | S915F | AGt | TTt | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 915 | S915del | AGT | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 1 | 1 | B.29 | 0.003509 |
ORF1ab/nsp3 | 915 | S915R | Agt | Cgt | 1 | 1 | B.4.5 | 0.011905 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 1 | 1 | B.61 | 0.005747 |
ORF1ab/nsp3 | 915 | S915F | AGt | TTt | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 915 | S915S | agT | agC | 1 | 1 | D.3 | 0.005917 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp3 | 915 | S915N | aGt | aAt | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp3 | 915 | S915G | Agt | Ggt | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 915 | S915I | aGt | aTt | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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