CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 915

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3915S915FS1733FnonsynAGtTTt1607160715462-5464
ORF1ab/nsp3915S915RS1733RnonsynAgtCgt107410540.9813785462-5464
ORF1ab/nsp3915S915RS1733RnonsynagTagG1074110.01024215462-5464
ORF1ab/nsp3915S915RS1733RnonsynagTagA107470.006517695462-5464
ORF1ab/nsp3915S915RS1733RnonsynAgTCgA107420.00186225462-5464
ORF1ab/nsp3915S915GS1733GnonsynAgtGgt50650615462-5464
ORF1ab/nsp3915S915IS1733InonsynaGtaTt23623615462-5464
ORF1ab/nsp3915S915NS1733NnonsynaGtaAt939315462-5464
ORF1ab/nsp3915S915SS1733SsynagTagC696915462-5464
ORF1ab/nsp3915S915CS1733CnonsynAgtTgt343415462-5464
ORF1ab/nsp3915S915delS1733deldelAGT---313115462-5464
ORF1ab/nsp3915S915TS1733TnonsynaGtaCt860.755462-5464
ORF1ab/nsp3915S915TS1733TnonsynaGTaCA820.255462-5464
ORF1ab/nsp3915S915PS1733PnonsynAGTCCA420.55462-5464
ORF1ab/nsp3915S915PS1733PnonsynAGtCCt420.55462-5464
ORF1ab/nsp3915S915KS1733KnonsynaGTaAA3315462-5464
ORF1ab/nsp3915S915del1S1733del1delagTag-320.6666675462-5464
ORF1ab/nsp3915S915del1S1733del1delAgt-gt310.3333335462-5464
ORF1ab/nsp3915S915DS1733DnonsynAGtGAt2215462-5464
ORF1ab/nsp3915S915XS1733XnonsynAgTTgA1115462-5464
ORF1ab/nsp3915S915del2S1733del2delAGt--t1115462-5464

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3915S915FAGtTTt16071607All0.000307
ORF1ab/nsp3915S915FAGtTTt15461546B.1.258.110.612763
ORF1ab/nsp3915S915RAgtCgt10541074All0.000202
ORF1ab/nsp3915S915RagTagG111074All0.000002
ORF1ab/nsp3915S915RagTagA71074All0.000001
ORF1ab/nsp3915S915RAgTCgA21074All0
ORF1ab/nsp3915S915RAgtCgt579579AY.330.038664
ORF1ab/nsp3915S915GAgtGgt506506All0.000097
ORF1ab/nsp3915S915RAgtCgt367367AY.3.10.03129
ORF1ab/nsp3915S915GAgtGgt267267A.2.50.133234
ORF1ab/nsp3915S915IaGtaTt236236All0.000045
ORF1ab/nsp3915S915NaGtaAt9393All0.000018
ORF1ab/nsp3915S915SagTagC6969All0.000013
ORF1ab/nsp3915S915IaGtaTt5050B.1.1.70.000045
ORF1ab/nsp3915S915IaGtaTt4141AY.4.2.10.006108
ORF1ab/nsp3915S915GAgtGgt3939B.1.10.000707
ORF1ab/nsp3915S915CAgtTgt3434All0.000007
ORF1ab/nsp3915S915delAGT---3131All0.000006
ORF1ab/nsp3915S915IaGtaTt2929AY.1130.004129
ORF1ab/nsp3915S915NaGtaAt2929B.1.1.70.000026
ORF1ab/nsp3915S915GAgtGgt2929B.1.617.20.000109
ORF1ab/nsp3915S915GAgtGgt2727AY.40.000042
ORF1ab/nsp3915S915IaGtaTt2626AY.30.000259
ORF1ab/nsp3915S915FAGtTTt2626AY.440.000158
ORF1ab/nsp3915S915RAgtCgt2323AY.430.000102
ORF1ab/nsp3915S915RAgtCgt2023B.1.1.70.000018
ORF1ab/nsp3915S915RagTagG223B.1.1.70.000002
ORF1ab/nsp3915S915RagTagA123B.1.1.70.000001
ORF1ab/nsp3915S915GAgtGgt2020AY.430.000089
ORF1ab/nsp3915S915GAgtGgt1717AY.390.00042
ORF1ab/nsp3915S915FAGtTTt1616B.1.1.70.000014
ORF1ab/nsp3915S915GAgtGgt1515B.1.1.70.000013
ORF1ab/nsp3915S915RAgtCgt1313B.1.617.20.000049
ORF1ab/nsp3915S915IaGtaTt1010A.2.50.00499
ORF1ab/nsp3915S915GAgtGgt1010AY.46.20.006353
ORF1ab/nsp3915S915IaGtaTt1010B.1.5260.000235
ORF1ab/nsp3915S915CAgtTgt99AY.750.000504
ORF1ab/nsp3915S915delAGT---99B.1.1.70.000008
ORF1ab/nsp3915S915CAgtTgt99B.1.1.70.000008
ORF1ab/nsp3915S915TaGtaCt68All0.000001
ORF1ab/nsp3915S915TaGTaCA28All0
ORF1ab/nsp3915S915SagTagC88B.1.1.70.000007
ORF1ab/nsp3915S915SagTagC88B.1.1770.000105
ORF1ab/nsp3915S915FAGtTTt88B.1.20.00007
ORF1ab/nsp3915S915SagTagC77AY.430.000031
ORF1ab/nsp3915S915NaGtaAt77B.1.1.2160.006233
ORF1ab/nsp3915S915GAgtGgt77B.1.36.80.007
ORF1ab/nsp3915S915RAgtCgt260.111111
ORF1ab/nsp3915S915RAgTCgA260.111111
ORF1ab/nsp3915S915RagTagA260.111111
ORF1ab/nsp3915S915GAgtGgt66AY.200.000233
ORF1ab/nsp3915S915IaGtaTt66AY.40.000009
ORF1ab/nsp3915S915NaGtaAt66AY.40.000009
ORF1ab/nsp3915S915RAgtCgt56AY.40.000008
ORF1ab/nsp3915S915RagTagA16AY.40.000002
ORF1ab/nsp3915S915GAgtGgt66AY.46.40.000987
ORF1ab/nsp3915S915NaGtaAt66B.10.000055
ORF1ab/nsp3915S915IaGtaTt66B.1.466.20.002347
ORF1ab/nsp3915S915RAgtCgt55B.1.4160.006345
ORF1ab/nsp3915S915NaGtaAt55B.1.617.20.000019
ORF1ab/nsp3915S915IaGtaTt55B.1.617.20.000019
ORF1ab/nsp3915S915IaGtaTt55D.20.000375
ORF1ab/nsp3915S915TaGtaCt240.111111
ORF1ab/nsp3915S915PAGtCCt240.111111
ORF1ab/nsp3915S915PAGTCCA240.111111
ORF1ab/nsp3915S915TaGTaCA240.111111
ORF1ab/nsp3915S915PAGtCCt24All0
ORF1ab/nsp3915S915PAGTCCA24All0
ORF1ab/nsp3915S915GAgtGgt44AY.1020.000106
ORF1ab/nsp3915S915SagTagC44AY.1030.000025
ORF1ab/nsp3915S915RAgtCgt44AY.140.000352
ORF1ab/nsp3915S915GAgtGgt44AY.250.000024
ORF1ab/nsp3915S915RAgtCgt44AY.250.000024
ORF1ab/nsp3915S915NaGtaAt44AY.440.000024
ORF1ab/nsp3915S915GAgtGgt44AY.440.000024
ORF1ab/nsp3915S915IaGtaTt44AY.440.000024
ORF1ab/nsp3915S915GAgtGgt44B.10.000037
ORF1ab/nsp3915S915RAgtCgt44B.1.10.000073
ORF1ab/nsp3915S915SagTagC44B.1.177.70.000659
ORF1ab/nsp3915S915GAgtGgt44B.1.20.000035
ORF1ab/nsp3915S915GAgtGgt44B.1.5750.001214
ORF1ab/nsp3915S915GAgtGgt44P.10.000063
ORF1ab/nsp3915S915KaGTaAA33All0.000001
ORF1ab/nsp3915S915del1agTag-23All0
ORF1ab/nsp3915S915del1Agt-gt13All0
ORF1ab/nsp3915S915SagTagC33AY.1040.005952
ORF1ab/nsp3915S915IaGtaTt33AY.250.000018
ORF1ab/nsp3915S915NaGtaAt33AY.430.000013
ORF1ab/nsp3915S915RAgtCgt23AY.440.000012
ORF1ab/nsp3915S915RagTagG13AY.440.000006
ORF1ab/nsp3915S915RAgtCgt33AY.690.00056
ORF1ab/nsp3915S915CAgtTgt33B.1.10.000054
ORF1ab/nsp3915S915NaGtaAt33B.1.1600.000094
ORF1ab/nsp3915S915IaGtaTt33B.1.1770.00004
ORF1ab/nsp3915S915SagTagC33B.1.20.000026
ORF1ab/nsp3915S915SagTagC33B.1.617.20.000011
ORF1ab/nsp3915S915SagTagC33P.1.170.000485
ORF1ab/nsp3915S915DAGtGAt220.111111
ORF1ab/nsp3915S915DAGtGAt22All0
ORF1ab/nsp3915S915RAgtCgt22AY.1030.000012
ORF1ab/nsp3915S915IaGtaTt22AY.1030.000012
ORF1ab/nsp3915S915SagTagC22AY.1100.000225
ORF1ab/nsp3915S915RAgtCgt22AY.1170.000169
ORF1ab/nsp3915S915RAgtCgt22AY.1180.000125
ORF1ab/nsp3915S915IaGtaTt22AY.230.000139
ORF1ab/nsp3915S915NaGtaAt22AY.230.000139
ORF1ab/nsp3915S915CAgtTgt22AY.30.00002
ORF1ab/nsp3915S915CAgtTgt22AY.40.000003
ORF1ab/nsp3915S915delAGT---22AY.40.000003
ORF1ab/nsp3915S915RagTagG22AY.4.20.000043
ORF1ab/nsp3915S915delAGT---22AY.430.000009
ORF1ab/nsp3915S915TaGtaCt22AY.440.000012
ORF1ab/nsp3915S915NaGtaAt22AY.460.000208
ORF1ab/nsp3915S915GAgtGgt22AY.590.001059
ORF1ab/nsp3915S915IaGtaTt22AY.70.000392
ORF1ab/nsp3915S915RagTagA22AY.750.000112
ORF1ab/nsp3915S915GAgtGgt22AY.770.002255
ORF1ab/nsp3915S915SagTagC22B.1.10.000036
ORF1ab/nsp3915S915KaGTaAA22B.1.1.70.000002
ORF1ab/nsp3915S915NaGtaAt22B.1.1770.000026
ORF1ab/nsp3915S915FAGtTTt22B.1.177.60.001953
ORF1ab/nsp3915S915CAgtTgt22B.1.177.60.001953
ORF1ab/nsp3915S915IaGtaTt22B.1.177.60.001953
ORF1ab/nsp3915S915NaGtaAt22B.1.20.000018
ORF1ab/nsp3915S915FAGtTTt22B.1.2580.000133
ORF1ab/nsp3915S915RAgtCgt22B.1.2650.002541
ORF1ab/nsp3915S915GAgtGgt22B.1.3510.000059
ORF1ab/nsp3915S915delAGT---22B.1.360.000292
ORF1ab/nsp3915S915SagTagC22B.1.4040.002604
ORF1ab/nsp3915S915FAGtTTt22B.1.4090.001563
ORF1ab/nsp3915S915IaGtaTt22B.1.4620.014493
ORF1ab/nsp3915S915GAgtGgt22B.1.4990.002101
ORF1ab/nsp3915S915GAgtGgt22B.1.5260.000047
ORF1ab/nsp3915S915SagTagC22B.1.5820.000981
ORF1ab/nsp3915S915delAGT---22B.1.617.20.000008
ORF1ab/nsp3915S915IaGtaTt22B.1.6340.006849
ORF1ab/nsp3915S915IaGtaTt22P.1.70.000639
ORF1ab/nsp3915S915IaGtaTt22P.20.000373
ORF1ab/nsp3915S915NaGtaAt22R.10.00018
ORF1ab/nsp3915S915GAgtGgt11A0.000387
ORF1ab/nsp3915S915SagTagC11A0.000387
ORF1ab/nsp3915S915delAGT---11A.2.20.001689
ORF1ab/nsp3915S915GAgtGgt11A.2.40.003367
ORF1ab/nsp3915S915GAgtGgt11A.23.10.000704
ORF1ab/nsp3915S915XAgTTgA11All0
ORF1ab/nsp3915S915del2AGt--t11All0
ORF1ab/nsp3915S915SagTagC11AY.1020.000027
ORF1ab/nsp3915S915RAgtCgt11AY.1020.000027
ORF1ab/nsp3915S915GAgtGgt11AY.1030.000006
ORF1ab/nsp3915S915NaGtaAt11AY.1030.000006
ORF1ab/nsp3915S915delAGT---11AY.1080.001103
ORF1ab/nsp3915S915RAgtCgt11AY.1100.000113
ORF1ab/nsp3915S915NaGtaAt11AY.1170.000085
ORF1ab/nsp3915S915SagTagC11AY.1180.000063
ORF1ab/nsp3915S915GAgtGgt11AY.1190.000035
ORF1ab/nsp3915S915NaGtaAt11AY.1190.000035
ORF1ab/nsp3915S915CAgtTgt11AY.130.000161
ORF1ab/nsp3915S915NaGtaAt11AY.140.000088
ORF1ab/nsp3915S915RagTagG11AY.160.00038
ORF1ab/nsp3915S915IaGtaTt11AY.20.000356
ORF1ab/nsp3915S915RagTagG11AY.200.000039
ORF1ab/nsp3915S915NaGtaAt11AY.200.000039
ORF1ab/nsp3915S915GAgtGgt11AY.230.00007
ORF1ab/nsp3915S915RAgtCgt11AY.230.00007
ORF1ab/nsp3915S915NaGtaAt11AY.250.000006
ORF1ab/nsp3915S915NaGtaAt11AY.260.000028
ORF1ab/nsp3915S915delAGT---11AY.260.000028
ORF1ab/nsp3915S915SagTagC11AY.280.00189
ORF1ab/nsp3915S915GAgtGgt11AY.290.000016
ORF1ab/nsp3915S915GAgtGgt11AY.30.00001
ORF1ab/nsp3915S915RAgtCgt11AY.30.00001
ORF1ab/nsp3915S915delAGT---11AY.30.00001
ORF1ab/nsp3915S915GAgtGgt11AY.3.10.000085
ORF1ab/nsp3915S915IaGtaTt11AY.300.000396
ORF1ab/nsp3915S915CAgtTgt11AY.330.000067
ORF1ab/nsp3915S915IaGtaTt11AY.390.000025
ORF1ab/nsp3915S915GAgtGgt11AY.39.10.00004
ORF1ab/nsp3915S915SagTagC11AY.40.000002
ORF1ab/nsp3915S915GAgtGgt11AY.4.20.000022
ORF1ab/nsp3915S915GAgtGgt11AY.4.50.000107
ORF1ab/nsp3915S915IaGtaTt11AY.430.000004
ORF1ab/nsp3915S915CAgtTgt11AY.430.000004
ORF1ab/nsp3915S915FAGtTTt11AY.430.000004
ORF1ab/nsp3915S915del2AGt--t11AY.440.000006
ORF1ab/nsp3915S915SagTagC11AY.440.000006
ORF1ab/nsp3915S915XAgTTgA11AY.440.000006
ORF1ab/nsp3915S915SagTagC11AY.450.000122
ORF1ab/nsp3915S915GAgtGgt11AY.46.60.000072
ORF1ab/nsp3915S915RAgtCgt11AY.46.60.000072
ORF1ab/nsp3915S915RAgtCgt11AY.470.000031
ORF1ab/nsp3915S915GAgtGgt11AY.50.000021
ORF1ab/nsp3915S915IaGtaTt11AY.50.000021
ORF1ab/nsp3915S915NaGtaAt11AY.50.000021
ORF1ab/nsp3915S915NaGtaAt11AY.510.000909
ORF1ab/nsp3915S915NaGtaAt11AY.540.000095
ORF1ab/nsp3915S915RAgtCgt11AY.590.00053
ORF1ab/nsp3915S915GAgtGgt11AY.60.000041
ORF1ab/nsp3915S915NaGtaAt11AY.60.000041
ORF1ab/nsp3915S915IaGtaTt11AY.60.000041
ORF1ab/nsp3915S915RAgtCgt11AY.610.000105
ORF1ab/nsp3915S915delAGT---11AY.660.00107
ORF1ab/nsp3915S915delAGT---11AY.670.000464
ORF1ab/nsp3915S915NaGtaAt11AY.720.001361
ORF1ab/nsp3915S915CAgtTgt11AY.75.10.00018
ORF1ab/nsp3915S915RAgtCgt11AY.840.000437
ORF1ab/nsp3915S915RAgtCgt11AY.9.20.000037
ORF1ab/nsp3915S915NaGtaAt11AY.920.000287
ORF1ab/nsp3915S915NaGtaAt11AY.930.000273
ORF1ab/nsp3915S915RAgtCgt11AY.98.10.000048
ORF1ab/nsp3915S915delAGT---11AY.99.10.001553
ORF1ab/nsp3915S915RagTagG11AY.99.20.000092
ORF1ab/nsp3915S915SagTagC11B0.000128
ORF1ab/nsp3915S915GAgtGgt11B0.000128
ORF1ab/nsp3915S915IaGtaTt11B.10.000009
ORF1ab/nsp3915S915RAgtCgt11B.10.000009
ORF1ab/nsp3915S915del1agTag-11B.10.000009
ORF1ab/nsp3915S915FAGtTTt11B.1.10.000018
ORF1ab/nsp3915S915IaGtaTt11B.1.10.000018
ORF1ab/nsp3915S915delAGT---11B.1.1.1420.017544
ORF1ab/nsp3915S915SagTagC11B.1.1.1610.003534
ORF1ab/nsp3915S915SagTagC11B.1.1.1890.001513
ORF1ab/nsp3915S915SagTagC11B.1.1.2220.000204
ORF1ab/nsp3915S915GAgtGgt11B.1.1.2220.000204
ORF1ab/nsp3915S915IaGtaTt11B.1.1.3060.000438
ORF1ab/nsp3915S915GAgtGgt11B.1.1.3060.000438
ORF1ab/nsp3915S915RagTagA11B.1.1.3980.003226
ORF1ab/nsp3915S915NaGtaAt11B.1.1.5190.00004
ORF1ab/nsp3915S915IaGtaTt11B.1.1.5190.00004
ORF1ab/nsp3915S915del1Agt-gt11B.1.1.5230.001563
ORF1ab/nsp3915S915GAgtGgt11B.1.1.630.000386
ORF1ab/nsp3915S915SagTagC11B.1.1.700.000341
ORF1ab/nsp3915S915IaGtaTt11B.1.1110.001175
ORF1ab/nsp3915S915IaGtaTt11B.1.1600.000031
ORF1ab/nsp3915S915CAgtTgt11B.1.1600.000031
ORF1ab/nsp3915S915delAGT---11B.1.1600.000031
ORF1ab/nsp3915S915SagTagC11B.1.160.190.035714
ORF1ab/nsp3915S915NaGtaAt11B.1.160.300.002976
ORF1ab/nsp3915S915CAgtTgt11B.1.1770.000013
ORF1ab/nsp3915S915GAgtGgt11B.1.1770.000013
ORF1ab/nsp3915S915delAGT---11B.1.177.160.000664
ORF1ab/nsp3915S915GAgtGgt11B.1.177.210.000076
ORF1ab/nsp3915S915del1agTag-11B.1.177.80.000752
ORF1ab/nsp3915S915RAgtCgt11B.1.20.000009
ORF1ab/nsp3915S915delAGT---11B.1.20.000009
ORF1ab/nsp3915S915NaGtaAt11B.1.214.20.0006
ORF1ab/nsp3915S915KaGTaAA11B.1.2210.000071
ORF1ab/nsp3915S915TaGtaCt11B.1.2400.000216
ORF1ab/nsp3915S915GAgtGgt11B.1.2400.000216
ORF1ab/nsp3915S915SagTagC11B.1.2430.00007
ORF1ab/nsp3915S915delAGT---11B.1.2580.000067
ORF1ab/nsp3915S915CAgtTgt11B.1.2580.000067
ORF1ab/nsp3915S915IaGtaTt11B.1.2580.000067
ORF1ab/nsp3915S915delAGT---11B.1.3190.003049
ORF1ab/nsp3915S915RagTagG11B.1.3320.003497
ORF1ab/nsp3915S915IaGtaTt11B.1.3510.00003
ORF1ab/nsp3915S915RAgtCgt11B.1.3510.00003
ORF1ab/nsp3915S915IaGtaTt11B.1.4160.001269
ORF1ab/nsp3915S915NaGtaAt11B.1.4270.00005
ORF1ab/nsp3915S915RagTagG11B.1.4290.000024
ORF1ab/nsp3915S915IaGtaTt11B.1.4290.000024
ORF1ab/nsp3915S915SagTagC11B.1.4290.000024
ORF1ab/nsp3915S915FAGtTTt11B.1.4320.011236
ORF1ab/nsp3915S915SagTagC11B.1.4620.007246
ORF1ab/nsp3915S915RagTagG11B.1.4620.007246
ORF1ab/nsp3915S915TaGtaCt11B.1.5260.000024
ORF1ab/nsp3915S915IaGtaTt11B.1.5270.003704
ORF1ab/nsp3915S915NaGtaAt11B.1.5750.000303
ORF1ab/nsp3915S915SagTagC11B.1.5810.009434
ORF1ab/nsp3915S915IaGtaTt11B.1.5820.000491
ORF1ab/nsp3915S915FAGtTTt11B.1.5900.004545
ORF1ab/nsp3915S915IaGtaTt11B.1.5950.000261
ORF1ab/nsp3915S915GAgtGgt11B.1.617.10.000129
ORF1ab/nsp3915S915delAGT---11B.150.017544
ORF1ab/nsp3915S915IaGtaTt11B.290.003509
ORF1ab/nsp3915S915RAgtCgt11B.4.50.011905
ORF1ab/nsp3915S915IaGtaTt11B.610.005747
ORF1ab/nsp3915S915FAGtTTt11C.360.000911
ORF1ab/nsp3915S915SagTagC11D.30.005917
ORF1ab/nsp3915S915GAgtGgt11P.1.100.000269
ORF1ab/nsp3915S915NaGtaAt11P.1.100.000269
ORF1ab/nsp3915S915GAgtGgt11P.1.150.000232
ORF1ab/nsp3915S915IaGtaTt11Q.80.000165