CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 899

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3899Y899YY1717YsyntaCtaT60460415414-5416
ORF1ab/nsp3899Y899HY1717HnonsynTacCac52500.9615385414-5416
ORF1ab/nsp3899Y899HY1717HnonsynTaCCaT5220.03846155414-5416
ORF1ab/nsp3899Y899delY1717deldelTAC---515115414-5416
ORF1ab/nsp3899Y899FY1717FnonsyntActTc5515414-5416
ORF1ab/nsp3899Y899XY1717XnonsyntaCtaA530.65414-5416
ORF1ab/nsp3899Y899XY1717XnonsyntaCtaG520.45414-5416
ORF1ab/nsp3899Y899CY1717CnonsyntActGc4415414-5416
ORF1ab/nsp3899Y899DY1717DnonsynTacGac2215414-5416
ORF1ab/nsp3899Y899QY1717QnonsynTaCCaA1115414-5416
ORF1ab/nsp3899Y899del2Y1717del2delTAc--c1115414-5416
ORF1ab/nsp3899Y899NY1717NnonsynTacAac1115414-5416
ORF1ab/nsp3899Y899del1Y1717del1delTac-ac1115414-5416

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3899Y899YtaCtaT604604All0.000116
ORF1ab/nsp3899Y899YtaCtaT7878B.1.4450.917647
ORF1ab/nsp3899Y899YtaCtaT7777AY.430.000341
ORF1ab/nsp3899Y899YtaCtaT6262AY.50.00128
ORF1ab/nsp3899Y899YtaCtaT5656AY.40.000087
ORF1ab/nsp3899Y899HTacCac5052All0.00001
ORF1ab/nsp3899Y899HTaCCaT252All0
ORF1ab/nsp3899Y899delTAC---5151All0.00001
ORF1ab/nsp3899Y899YtaCtaT4040AY.460.004163
ORF1ab/nsp3899Y899YtaCtaT3636B.1.1.70.000032
ORF1ab/nsp3899Y899HTacCac2727AY.40.000042
ORF1ab/nsp3899Y899YtaCtaT2525AY.440.000152
ORF1ab/nsp3899Y899YtaCtaT2222B.1.1600.000686
ORF1ab/nsp3899Y899YtaCtaT2121B.1.6210.001859
ORF1ab/nsp3899Y899delTAC---1717B.1.1.70.000015
ORF1ab/nsp3899Y899YtaCtaT1616AY.330.001068
ORF1ab/nsp3899Y899YtaCtaT1515B.1.10.000272
ORF1ab/nsp3899Y899YtaCtaT1515B.1.20.000132
ORF1ab/nsp3899Y899YtaCtaT1414B.1.617.20.000053
ORF1ab/nsp3899Y899YtaCtaT1111B.1.1.5190.000437
ORF1ab/nsp3899Y899YtaCtaT1010AY.290.000158
ORF1ab/nsp3899Y899YtaCtaT99B.10.000082
ORF1ab/nsp3899Y899YtaCtaT88AY.250.000048
ORF1ab/nsp3899Y899YtaCtaT66B.1.4270.000303
ORF1ab/nsp3899Y899FtActTc55All0.000001
ORF1ab/nsp3899Y899XtaCtaA35All0.000001
ORF1ab/nsp3899Y899XtaCtaG25All0
ORF1ab/nsp3899Y899YtaCtaT55AY.1020.000133
ORF1ab/nsp3899Y899YtaCtaT55AY.1180.000313
ORF1ab/nsp3899Y899CtActGc44All0.000001
ORF1ab/nsp3899Y899YtaCtaT44AY.1030.000025
ORF1ab/nsp3899Y899YtaCtaT44AY.200.000155
ORF1ab/nsp3899Y899HTacCac44AY.30.00004
ORF1ab/nsp3899Y899YtaCtaT44AY.470.000124
ORF1ab/nsp3899Y899YtaCtaT44B.1.6370.000292
ORF1ab/nsp3899Y899YtaCtaT44P.10.000063
ORF1ab/nsp3899Y899delTAC---33AY.250.000018
ORF1ab/nsp3899Y899YtaCtaT33AY.46.60.000217
ORF1ab/nsp3899Y899YtaCtaT33B.1.1.4340.001046
ORF1ab/nsp3899Y899delTAC---33B.1.20.000026
ORF1ab/nsp3899Y899HTacCac33B.1.617.20.000011
ORF1ab/nsp3899Y899HTacCac33P.10.000047
ORF1ab/nsp3899Y899HTacCac33P.1.140.000143
ORF1ab/nsp3899Y899DTacGac22All0
ORF1ab/nsp3899Y899YtaCtaT22AY.1210.000271
ORF1ab/nsp3899Y899YtaCtaT22AY.260.000057
ORF1ab/nsp3899Y899delTAC---22AY.40.000003
ORF1ab/nsp3899Y899delTAC---22AY.430.000009
ORF1ab/nsp3899Y899YtaCtaT22AY.60.000082
ORF1ab/nsp3899Y899YtaCtaT22B0.000256
ORF1ab/nsp3899Y899HTacCac22B.10.000018
ORF1ab/nsp3899Y899YtaCtaT22B.1.1.2220.000408
ORF1ab/nsp3899Y899delTAC---22B.1.1600.000062
ORF1ab/nsp3899Y899HTacCac22B.1.1600.000062
ORF1ab/nsp3899Y899YtaCtaT22B.1.1770.000026
ORF1ab/nsp3899Y899YtaCtaT22B.1.177.70.00033
ORF1ab/nsp3899Y899YtaCtaT22B.1.2430.000139
ORF1ab/nsp3899Y899delTAC---22B.1.360.000292
ORF1ab/nsp3899Y899HTaCCaT22B.1.4110.007407
ORF1ab/nsp3899Y899YtaCtaT22B.1.617.10.000258
ORF1ab/nsp3899Y899CtActGc22P.10.000032
ORF1ab/nsp3899Y899delTAC---11A.2.20.001689
ORF1ab/nsp3899Y899HTacCac11A.2.40.003367
ORF1ab/nsp3899Y899del2TAc--c11All0
ORF1ab/nsp3899Y899QTaCCaA11All0
ORF1ab/nsp3899Y899del1Tac-ac11All0
ORF1ab/nsp3899Y899NTacAac11All0
ORF1ab/nsp3899Y899delTAC---11AY.1080.001103
ORF1ab/nsp3899Y899HTacCac11AY.116.10.000311
ORF1ab/nsp3899Y899YtaCtaT11AY.230.00007
ORF1ab/nsp3899Y899HTacCac11AY.250.000006
ORF1ab/nsp3899Y899CtActGc11AY.250.000006
ORF1ab/nsp3899Y899delTAC---11AY.260.000028
ORF1ab/nsp3899Y899YtaCtaT11AY.270.000065
ORF1ab/nsp3899Y899YtaCtaT11AY.30.00001
ORF1ab/nsp3899Y899YtaCtaT11AY.3.10.000085
ORF1ab/nsp3899Y899YtaCtaT11AY.390.000025
ORF1ab/nsp3899Y899YtaCtaT11AY.4.20.000022
ORF1ab/nsp3899Y899delTAC---11AY.440.000006
ORF1ab/nsp3899Y899YtaCtaT11AY.450.000122
ORF1ab/nsp3899Y899YtaCtaT11AY.610.000105
ORF1ab/nsp3899Y899delTAC---11AY.660.00107
ORF1ab/nsp3899Y899YtaCtaT11AY.860.00083
ORF1ab/nsp3899Y899YtaCtaT11AY.9.10.000084
ORF1ab/nsp3899Y899YtaCtaT11AY.9.20.000037
ORF1ab/nsp3899Y899del1Tac-ac11AY.930.000273
ORF1ab/nsp3899Y899delTAC---11AY.990.001049
ORF1ab/nsp3899Y899YtaCtaT11AY.99.20.000092
ORF1ab/nsp3899Y899XtaCtaA11B.10.000009
ORF1ab/nsp3899Y899DTacGac11B.10.000009
ORF1ab/nsp3899Y899XtaCtaG11B.1.10.000018
ORF1ab/nsp3899Y899delTAC---11B.1.10.000018
ORF1ab/nsp3899Y899DTacGac11B.1.10.000018
ORF1ab/nsp3899Y899YtaCtaT11B.1.1.1290.009174
ORF1ab/nsp3899Y899delTAC---11B.1.1.1420.017544
ORF1ab/nsp3899Y899YtaCtaT11B.1.1.1630.007634
ORF1ab/nsp3899Y899YtaCtaT11B.1.1.2140.000055
ORF1ab/nsp3899Y899FtActTc11B.1.1.3000.010753
ORF1ab/nsp3899Y899YtaCtaT11B.1.1.3160.000925
ORF1ab/nsp3899Y899XtaCtaA11B.1.1.70.000001
ORF1ab/nsp3899Y899HTacCac11B.1.1.70.000001
ORF1ab/nsp3899Y899HTacCac11B.1.1.700.000341
ORF1ab/nsp3899Y899YtaCtaT11B.1.1570.002985
ORF1ab/nsp3899Y899XtaCtaA11B.1.1770.000013
ORF1ab/nsp3899Y899delTAC---11B.1.177.160.000664
ORF1ab/nsp3899Y899delTAC---11B.1.177.40.000211
ORF1ab/nsp3899Y899delTAC---11B.1.177.540.000606
ORF1ab/nsp3899Y899delTAC---11B.1.177.830.001481
ORF1ab/nsp3899Y899FtActTc11B.1.1840.058824
ORF1ab/nsp3899Y899del2TAc--c11B.1.230.006061
ORF1ab/nsp3899Y899QTaCCaA11B.1.2580.000067
ORF1ab/nsp3899Y899delTAC---11B.1.258.30.001675
ORF1ab/nsp3899Y899delTAC---11B.1.3190.003049
ORF1ab/nsp3899Y899XtaCtaG11B.1.3380.008621
ORF1ab/nsp3899Y899YtaCtaT11B.1.36.80.001
ORF1ab/nsp3899Y899FtActTc11B.1.36.80.001
ORF1ab/nsp3899Y899NTacAac11B.1.3620.001541
ORF1ab/nsp3899Y899YtaCtaT11B.1.4000.000429
ORF1ab/nsp3899Y899YtaCtaT11B.1.4290.000024
ORF1ab/nsp3899Y899YtaCtaT11B.1.438.10.000107
ORF1ab/nsp3899Y899YtaCtaT11B.1.4520.013699
ORF1ab/nsp3899Y899YtaCtaT11B.1.4990.00105
ORF1ab/nsp3899Y899YtaCtaT11B.1.5640.000426
ORF1ab/nsp3899Y899YtaCtaT11B.1.5770.000687
ORF1ab/nsp3899Y899YtaCtaT11B.1.5870.001898
ORF1ab/nsp3899Y899YtaCtaT11B.1.5950.000261
ORF1ab/nsp3899Y899FtActTc11B.1.617.20.000004
ORF1ab/nsp3899Y899delTAC---11B.1.617.20.000004
ORF1ab/nsp3899Y899YtaCtaT11B.1.6200.000946
ORF1ab/nsp3899Y899delTAC---11B.150.017544
ORF1ab/nsp3899Y899YtaCtaT11B.400.000364
ORF1ab/nsp3899Y899delTAC---11C.360.000911
ORF1ab/nsp3899Y899FtActTc11D.20.000075
ORF1ab/nsp3899Y899CtActGc11D.20.000075
ORF1ab/nsp3899Y899delTAC---11P.10.000016
ORF1ab/nsp3899Y899delTAC---11P.1.10.000318
ORF1ab/nsp3899Y899delTAC---11Q.20.000613
ORF1ab/nsp3899Y899HTacCac11R.10.00009