CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 890 & Codon = gAt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3890A890DA1708DnonsyngCtgAt114280911426510.9998625387-5389

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3890A890DgCtgAt11426511142809All0.218546
ORF1ab/nsp3890A890DgCtgAt11109001111057B.1.1.70.994503
ORF1ab/nsp3890A890DgCtgAt79047904Q.10.998484
ORF1ab/nsp3890A890DgCtgAt68826882Q.30.998115
ORF1ab/nsp3890A890DgCtgAt54505450Q.80.898747
ORF1ab/nsp3890A890DgCtgAt24532454B.1.10.0445
ORF1ab/nsp3890A890DgCtgAt21872187Q.40.994543
ORF1ab/nsp3890A890DgCtgAt16231623Q.20.995706
ORF1ab/nsp3890A890DgCtgAt14821482B.10.013574
ORF1ab/nsp3890A890DgCtgAt894894Q.70.993333
ORF1ab/nsp3890A890DgCtgAt722722AY.40.001124
ORF1ab/nsp3890A890DgCtgAt174174B.1.3750.142623
ORF1ab/nsp3890A890DgCtgAt153153B.1.177.730.086636
ORF1ab/nsp3890A890DgCtgAt151151Q.61
ORF1ab/nsp3890A890DgCtgAt129129B.1.5760.116954
ORF1ab/nsp3890A890DgCtgAt9999B.1.5960.008627
ORF1ab/nsp3890A890DgCtgAt9393B.1.1770.001225
ORF1ab/nsp3890A890DgCtgAt8787B.1.20.000766
ORF1ab/nsp3890A890DgCtgAt7171B0.009075
ORF1ab/nsp3890A890DgCtgAt6666B.1.1600.002058
ORF1ab/nsp3890A890DgCtgAt6363B.1.1.2050.234201
ORF1ab/nsp3890A890DgCtgAt5959Q.51
ORF1ab/nsp3890A890DgCtgAt4848B.1.2210.00341
ORF1ab/nsp3890A890DgCtgAt4545P.10.000709
ORF1ab/nsp3890A890DgCtgAt4242B.1.5260.000987
ORF1ab/nsp3890A890DgCtgAt4040B.1.617.20.000151
ORF1ab/nsp3890A890DgCtgAt3838B.1.1.4090.107649
ORF1ab/nsp3890A890DgCtgAt3535AY.440.000213
ORF1ab/nsp3890A890DgCtgAt3333B.1.3510.000981
ORF1ab/nsp3890A890DgCtgAt3232B.1.177.70.005275
ORF1ab/nsp3890A890DgCtgAt3232B.1.6090.01534
ORF1ab/nsp3890A890DgCtgAt2929P.1.10.009212
ORF1ab/nsp3890A890DgCtgAt2222B.1.1.1610.077739
ORF1ab/nsp3890A890DgCtgAt1919B.1.1.5190.000755
ORF1ab/nsp3890A890DgCtgAt1818B.1.1.3120.034417
ORF1ab/nsp3890A890DgCtgAt1818B.1.4290.000424
ORF1ab/nsp3890A890DgCtgAt1717B.1.617.10.002192
ORF1ab/nsp3890A890DgCtgAt1414B.1.1.2200.026022
ORF1ab/nsp3890A890DgCtgAt1414B.1.6200.013245
ORF1ab/nsp3890A890DgCtgAt1313B.1.1.5280.0625
ORF1ab/nsp3890A890DgCtgAt1212B.1.1.390.006116
ORF1ab/nsp3890A890DgCtgAt1212B.1.1.5070.104348
ORF1ab/nsp3890A890DgCtgAt11110.611111
ORF1ab/nsp3890A890DgCtgAt1111AY.390.000272
ORF1ab/nsp3890A890DgCtgAt1111AY.430.000049
ORF1ab/nsp3890A890DgCtgAt1010P.1.160.003741
ORF1ab/nsp3890A890DgCtgAt99B.1.2580.000599
ORF1ab/nsp3890A890DgCtgAt99B.1.6370.000658
ORF1ab/nsp3890A890DgCtgAt88AY.1020.000212
ORF1ab/nsp3890A890DgCtgAt88B.1.5800.03252
ORF1ab/nsp3890A890DgCtgAt88B.1.6230.004292
ORF1ab/nsp3890A890DgCtgAt88C.370.000929
ORF1ab/nsp3890A890DgCtgAt88P.1.120.003872
ORF1ab/nsp3890A890DgCtgAt77AY.470.000218
ORF1ab/nsp3890A890DgCtgAt77B.1.4110.025926
ORF1ab/nsp3890A890DgCtgAt77C.36.30.003971
ORF1ab/nsp3890A890DgCtgAt77P.1.150.001626
ORF1ab/nsp3890A890DgCtgAt66B.1.1.500.004073
ORF1ab/nsp3890A890DgCtgAt66B.1.177.410.015
ORF1ab/nsp3890A890DgCtgAt66B.1.4270.000303
ORF1ab/nsp3890A890DgCtgAt66B.1.5330.057692
ORF1ab/nsp3890A890DgCtgAt55AY.300.001979
ORF1ab/nsp3890A890DgCtgAt55B.1.1.100.005574
ORF1ab/nsp3890A890DgCtgAt55B.1.1390.003666
ORF1ab/nsp3890A890DgCtgAt55B.1.2340.00066
ORF1ab/nsp3890A890DgCtgAt55B.1.2430.000348
ORF1ab/nsp3890A890DgCtgAt44A.2.50.001996
ORF1ab/nsp3890A890DgCtgAt44AD.20.000876
ORF1ab/nsp3890A890DgCtgAt44AY.250.000024
ORF1ab/nsp3890A890DgCtgAt44AY.450.000487
ORF1ab/nsp3890A890DgCtgAt44B.1.1.10.001307
ORF1ab/nsp3890A890DgCtgAt44B.1.1.280.001245
ORF1ab/nsp3890A890DgCtgAt44B.1.1.5240.083333
ORF1ab/nsp3890A890DgCtgAt44B.1.1.700.001364
ORF1ab/nsp3890A890DgCtgAt44B.1.3110.001098
ORF1ab/nsp3890A890DgCtgAt44B.1.3300.114286
ORF1ab/nsp3890A890DgCtgAt44B.1.5950.001044
ORF1ab/nsp3890A890DgCtgAt44B.1.5990.014599
ORF1ab/nsp3890A890DgCtgAt44B.1.6330.166667
ORF1ab/nsp3890A890DgCtgAt44P.1.60.007782
ORF1ab/nsp3890A890DgCtgAt44P.1.70.001277
ORF1ab/nsp3890A890DgCtgAt44R.10.00036
ORF1ab/nsp3890A890DgCtgAt33AY.230.000209
ORF1ab/nsp3890A890DgCtgAt33AY.260.000085
ORF1ab/nsp3890A890DgCtgAt33AY.520.002443
ORF1ab/nsp3890A890DgCtgAt33AY.75.10.000541
ORF1ab/nsp3890A890DgCtgAt33B.1.1.250.001706
ORF1ab/nsp3890A890DgCtgAt33B.1.1.3700.037975
ORF1ab/nsp3890A890DgCtgAt33B.1.1.5250.016393
ORF1ab/nsp3890A890DgCtgAt33B.1.160.160.002788
ORF1ab/nsp3890A890DgCtgAt33B.1.1700.012931
ORF1ab/nsp3890A890DgCtgAt33B.1.177.160.001993
ORF1ab/nsp3890A890DgCtgAt33B.1.177.310.034483
ORF1ab/nsp3890A890DgCtgAt33B.1.2140.010989
ORF1ab/nsp3890A890DgCtgAt33B.1.258.170.000312
ORF1ab/nsp3890A890DgCtgAt33B.1.3670.002377
ORF1ab/nsp3890A890DgCtgAt33B.1.4620.021739
ORF1ab/nsp3890A890DgCtgAt33B.1.6250.007059
ORF1ab/nsp3890A890DgCtgAt33B.1.780.025641
ORF1ab/nsp3890A890DgCtgAt22A0.000774
ORF1ab/nsp3890A890DgCtgAt22AY.1030.000012
ORF1ab/nsp3890A890DgCtgAt22AY.1170.000169
ORF1ab/nsp3890A890DgCtgAt22AY.290.000032
ORF1ab/nsp3890A890DgCtgAt22AY.4.2.10.000298
ORF1ab/nsp3890A890DgCtgAt22AY.50.000041
ORF1ab/nsp3890A890DgCtgAt22AY.670.000929
ORF1ab/nsp3890A890DgCtgAt22AY.680.000547
ORF1ab/nsp3890A890DgCtgAt22AY.750.000112
ORF1ab/nsp3890A890DgCtgAt22AY.920.000575
ORF1ab/nsp3890A890DgCtgAt22AZ.30.00304
ORF1ab/nsp3890A890DgCtgAt22B.1.1.1410.004024
ORF1ab/nsp3890A890DgCtgAt22B.1.1.2910.001485
ORF1ab/nsp3890A890DgCtgAt22B.1.1.2940.002532
ORF1ab/nsp3890A890DgCtgAt22B.1.1.2990.02439
ORF1ab/nsp3890A890DgCtgAt22B.1.1.3060.000877
ORF1ab/nsp3890A890DgCtgAt22B.1.1.3150.016949
ORF1ab/nsp3890A890DgCtgAt22B.1.1.3180.000604
ORF1ab/nsp3890A890DgCtgAt22B.1.1.3720.001377
ORF1ab/nsp3890A890DgCtgAt22B.1.1.3890.012121
ORF1ab/nsp3890A890DgCtgAt22B.1.1.4620.017241
ORF1ab/nsp3890A890DgCtgAt22B.1.177.500.00939
ORF1ab/nsp3890A890DgCtgAt22B.1.177.820.000955
ORF1ab/nsp3890A890DgCtgAt22B.1.2060.001631
ORF1ab/nsp3890A890DgCtgAt22B.1.214.30.014286
ORF1ab/nsp3890A890DgCtgAt22B.1.2370.00995
ORF1ab/nsp3890A890DgCtgAt22B.1.415.10.015152
ORF1ab/nsp3890A890DgCtgAt22B.1.466.20.000782
ORF1ab/nsp3890A890DgCtgAt22B.1.4700.002809
ORF1ab/nsp3890A890DgCtgAt22B.1.5300.014286
ORF1ab/nsp3890A890DgCtgAt22B.1.5640.000852
ORF1ab/nsp3890A890DgCtgAt22B.1.5750.000607
ORF1ab/nsp3890A890DgCtgAt22B.1.6190.001742
ORF1ab/nsp3890A890DgCtgAt22B.1.6280.000705
ORF1ab/nsp3890A890DgCtgAt22C.360.001821
ORF1ab/nsp3890A890DgCtgAt22P.1.10.10.01626
ORF1ab/nsp3890A890DgCtgAt22P.1.130.001797
ORF1ab/nsp3890A890DgCtgAt22P.1.170.000324
ORF1ab/nsp3890A890DgCtgAt22P.30.00319
ORF1ab/nsp3890A890DgCtgAt11A.2.5.20.001572
ORF1ab/nsp3890A890DgCtgAt11A.210.00277
ORF1ab/nsp3890A890DgCtgAt11A.270.001656
ORF1ab/nsp3890A890DgCtgAt11A.70.055556
ORF1ab/nsp3890A890DgCtgAt11AT.10.005128
ORF1ab/nsp3890A890DgCtgAt11AY.120.000316
ORF1ab/nsp3890A890DgCtgAt11AY.1210.000135
ORF1ab/nsp3890A890DgCtgAt11AY.130.000161
ORF1ab/nsp3890A890DgCtgAt11AY.20.000356
ORF1ab/nsp3890A890DgCtgAt11AY.350.000233
ORF1ab/nsp3890A890DgCtgAt11AY.360.000148
ORF1ab/nsp3890A890DgCtgAt11AY.4.50.000107
ORF1ab/nsp3890A890DgCtgAt11AY.460.000104
ORF1ab/nsp3890A890DgCtgAt11AY.46.60.000072
ORF1ab/nsp3890A890DgCtgAt11AY.5.40.000277
ORF1ab/nsp3890A890DgCtgAt11AY.530.000288
ORF1ab/nsp3890A890DgCtgAt11AY.610.000105
ORF1ab/nsp3890A890DgCtgAt11AY.620.000436
ORF1ab/nsp3890A890DgCtgAt11AY.70.000196
ORF1ab/nsp3890A890DgCtgAt11AY.700.000209
ORF1ab/nsp3890A890DgCtgAt11AY.90.000068
ORF1ab/nsp3890A890DgCtgAt11AY.930.000273
ORF1ab/nsp3890A890DgCtgAt11AY.950.000761
ORF1ab/nsp3890A890DgCtgAt11AY.980.000079
ORF1ab/nsp3890A890DgCtgAt11B.1.1.1350.004695
ORF1ab/nsp3890A890DgCtgAt11B.1.1.1530.001095
ORF1ab/nsp3890A890DgCtgAt11B.1.1.1710.003676
ORF1ab/nsp3890A890DgCtgAt11B.1.1.1870.00885
ORF1ab/nsp3890A890DgCtgAt11B.1.1.2070.001182
ORF1ab/nsp3890A890DgCtgAt11B.1.1.2210.010101
ORF1ab/nsp3890A890DgCtgAt11B.1.1.2310.003096
ORF1ab/nsp3890A890DgCtgAt11B.1.1.2360.006897
ORF1ab/nsp3890A890DgCtgAt11B.1.1.2370.005405
ORF1ab/nsp3890A890DgCtgAt11B.1.1.2540.011236
ORF1ab/nsp3890A890DgCtgAt11B.1.1.2580.003257
ORF1ab/nsp3890A890DgCtgAt11B.1.1.2690.001353
ORF1ab/nsp3890A890DgCtgAt11B.1.1.2770.000759
ORF1ab/nsp3890A890DgCtgAt11B.1.1.3010.001179
ORF1ab/nsp3890A890DgCtgAt11B.1.1.3110.000358
ORF1ab/nsp3890A890DgCtgAt11B.1.1.3170.000412
ORF1ab/nsp3890A890DgCtgAt11B.1.1.340.013158
ORF1ab/nsp3890A890DgCtgAt11B.1.1.3740.002375
ORF1ab/nsp3890A890DgCtgAt11B.1.1.4060.006494
ORF1ab/nsp3890A890DgCtgAt11B.1.1.4370.010417
ORF1ab/nsp3890A890DgCtgAt11B.1.1.440.00241
ORF1ab/nsp3890A890DgCtgAt11B.1.1.4480.002033
ORF1ab/nsp3890A890DgCtgAt11B.1.1.5230.001563
ORF1ab/nsp3890A890DgCtgAt11B.1.1.550.012987
ORF1ab/nsp3890A890DgCtgAt11B.1.1.630.000386
ORF1ab/nsp3890A890DgCtgAt11B.1.1.830.00271
ORF1ab/nsp3890A890DgCtgAt11B.1.1.890.006061
ORF1ab/nsp3890A890DgCtgAt11B.1.1.990.02381
ORF1ab/nsp3890A890DgCtgAt11B.1.110.30.000718
ORF1ab/nsp3890A890DgCtgAt11B.1.1400.018868
ORF1ab/nsp3890A890DgCtgAt11B.1.1430.021277
ORF1ab/nsp3890A890DgCtgAt11B.1.1570.002985
ORF1ab/nsp3890A890DgCtgAt11B.1.160.100.008065
ORF1ab/nsp3890A890DgCtgAt11B.1.160.130.027778
ORF1ab/nsp3890A890DgCtgAt11B.1.160.140.002119
ORF1ab/nsp3890A890DgCtgAt11B.1.160.170.001701
ORF1ab/nsp3890A890DgCtgAt11B.1.160.240.004425
ORF1ab/nsp3890A890DgCtgAt11B.1.160.260.002421
ORF1ab/nsp3890A890DgCtgAt11B.1.160.70.002079
ORF1ab/nsp3890A890DgCtgAt11B.1.160.80.001289
ORF1ab/nsp3890A890DgCtgAt11B.1.177.150.000631
ORF1ab/nsp3890A890DgCtgAt11B.1.177.210.000076
ORF1ab/nsp3890A890DgCtgAt11B.1.177.350.000691
ORF1ab/nsp3890A890DgCtgAt11B.1.177.420.000894
ORF1ab/nsp3890A890DgCtgAt11B.1.177.440.000519
ORF1ab/nsp3890A890DgCtgAt11B.1.177.510.004566
ORF1ab/nsp3890A890DgCtgAt11B.1.177.520.001757
ORF1ab/nsp3890A890DgCtgAt11B.1.177.540.000606
ORF1ab/nsp3890A890DgCtgAt11B.1.177.580.001332
ORF1ab/nsp3890A890DgCtgAt11B.1.177.600.000218
ORF1ab/nsp3890A890DgCtgAt11B.1.177.670.007634
ORF1ab/nsp3890A890DgCtgAt11B.1.177.810.000189
ORF1ab/nsp3890A890DgCtgAt11B.1.177.860.000183
ORF1ab/nsp3890A890DgCtgAt11B.1.177.90.001332
ORF1ab/nsp3890A890DgCtgAt11B.1.1790.003759
ORF1ab/nsp3890A890DgCtgAt11B.1.214.20.0006
ORF1ab/nsp3890A890DgCtgAt11B.1.2390.001221
ORF1ab/nsp3890A890DgCtgAt11B.1.258.140.00098
ORF1ab/nsp3890A890DgCtgAt11B.1.2650.001271
ORF1ab/nsp3890A890DgCtgAt11B.1.2680.010417
ORF1ab/nsp3890A890DgCtgAt11B.1.3490.000715
ORF1ab/nsp3890A890DgCtgAt11B.1.360.000146
ORF1ab/nsp3890A890DgCtgAt11B.1.36.10.00114
ORF1ab/nsp3890A890DgCtgAt11B.1.3690.000285
ORF1ab/nsp3890A890DgCtgAt11B.1.3800.006623
ORF1ab/nsp3890A890DgCtgAt11B.1.3810.007812
ORF1ab/nsp3890A890DgCtgAt11B.1.3990.001934
ORF1ab/nsp3890A890DgCtgAt11B.1.4280.00102
ORF1ab/nsp3890A890DgCtgAt11B.1.4330.003195
ORF1ab/nsp3890A890DgCtgAt11B.1.4730.019231
ORF1ab/nsp3890A890DgCtgAt11B.1.4970.000315
ORF1ab/nsp3890A890DgCtgAt11B.1.5170.000427
ORF1ab/nsp3890A890DgCtgAt11B.1.5210.004975
ORF1ab/nsp3890A890DgCtgAt11B.1.5610.000397
ORF1ab/nsp3890A890DgCtgAt11B.1.5740.002151
ORF1ab/nsp3890A890DgCtgAt11B.1.6210.000089
ORF1ab/nsp3890A890DgCtgAt11B.1.6270.00202
ORF1ab/nsp3890A890DgCtgAt11B.1.940.027027
ORF1ab/nsp3890A890DgCtgAt11C.37.10.002618
ORF1ab/nsp3890A890DgCtgAt11N.50.001767
ORF1ab/nsp3890A890DgCtgAt11P.1.100.000269

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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