CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 890

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3890A890DA1708DnonsyngCtgAt114280911426510.9998625387-5389
ORF1ab/nsp3890A890DA1708DnonsyngCTgAC11428091580.0001382565387-5389
ORF1ab/nsp3890A890VA1708VnonsyngCtgTt4564550.9978075387-5389
ORF1ab/nsp3890A890VA1708VnonsyngCTgTA45610.002192985387-5389
ORF1ab/nsp3890A890AA1708AsyngcTgcC3292070.6291795387-5389
ORF1ab/nsp3890A890AA1708AsyngcTgcA3291000.3039515387-5389
ORF1ab/nsp3890A890AA1708AsyngcTgcG329220.06686935387-5389
ORF1ab/nsp3890A890SA1708SnonsynGctTct2842830.9964795387-5389
ORF1ab/nsp3890A890SA1708SnonsynGcTTcG28410.003521135387-5389
ORF1ab/nsp3890A890GA1708GnonsyngCtgGt1391380.9928065387-5389
ORF1ab/nsp3890A890GA1708GnonsyngCTgGA13910.007194245387-5389
ORF1ab/nsp3890A890TA1708TnonsynGctAct99980.9898995387-5389
ORF1ab/nsp3890A890TA1708TnonsynGcTAcA9910.0101015387-5389
ORF1ab/nsp3890A890delA1708deldelGCT---444415387-5389
ORF1ab/nsp3890A890NA1708NnonsynGCtAAt292915387-5389
ORF1ab/nsp3890A890YA1708YnonsynGCtTAt101015387-5389
ORF1ab/nsp3890A890PA1708PnonsynGctCct8815387-5389
ORF1ab/nsp3890A890del1A1708del1delgCtg-t740.5714295387-5389
ORF1ab/nsp3890A890del1A1708del1delGct-ct720.2857145387-5389
ORF1ab/nsp3890A890del1A1708del1delgcTgc-710.1428575387-5389
ORF1ab/nsp3890A890del2A1708del2delGCTA--1115387-5389
ORF1ab/nsp3890A890EA1708EnonsyngCTgAA1115387-5389

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3890A890DgCtgAt11426511142809All0.218546
ORF1ab/nsp3890A890DgCTgAC1581142809All0.00003
ORF1ab/nsp3890A890DgCtgAt11109001111057B.1.1.70.994503
ORF1ab/nsp3890A890DgCTgAC1571111057B.1.1.70.000141
ORF1ab/nsp3890A890DgCtgAt79047904Q.10.998484
ORF1ab/nsp3890A890DgCtgAt68826882Q.30.998115
ORF1ab/nsp3890A890DgCtgAt54505450Q.80.898747
ORF1ab/nsp3890A890DgCtgAt24532454B.1.10.0445
ORF1ab/nsp3890A890DgCTgAC12454B.1.10.000018
ORF1ab/nsp3890A890DgCtgAt21872187Q.40.994543
ORF1ab/nsp3890A890DgCtgAt16231623Q.20.995706
ORF1ab/nsp3890A890DgCtgAt14821482B.10.013574
ORF1ab/nsp3890A890DgCtgAt894894Q.70.993333
ORF1ab/nsp3890A890DgCtgAt722722AY.40.001124
ORF1ab/nsp3890A890VgCtgTt455456All0.000087
ORF1ab/nsp3890A890VgCTgTA1456All0
ORF1ab/nsp3890A890AgcTgcC207329All0.00004
ORF1ab/nsp3890A890AgcTgcA100329All0.000019
ORF1ab/nsp3890A890AgcTgcG22329All0.000004
ORF1ab/nsp3890A890SGctTct283284All0.000054
ORF1ab/nsp3890A890SGcTTcG1284All0
ORF1ab/nsp3890A890DgCtgAt174174B.1.3750.142623
ORF1ab/nsp3890A890DgCtgAt153153B.1.177.730.086636
ORF1ab/nsp3890A890DgCtgAt151151Q.61
ORF1ab/nsp3890A890GgCtgGt138139All0.000026
ORF1ab/nsp3890A890GgCTgGA1139All0
ORF1ab/nsp3890A890DgCtgAt129129B.1.5760.116954
ORF1ab/nsp3890A890GgCtgGt116116B.1.1.70.000104
ORF1ab/nsp3890A890SGctTct107107AY.40.000167
ORF1ab/nsp3890A890SGctTct102102AY.250.000614
ORF1ab/nsp3890A890TGctAct9899All0.000019
ORF1ab/nsp3890A890TGcTAcA199All0
ORF1ab/nsp3890A890DgCtgAt9999B.1.5960.008627
ORF1ab/nsp3890A890DgCtgAt9393B.1.1770.001225
ORF1ab/nsp3890A890DgCtgAt8787B.1.20.000766
ORF1ab/nsp3890A890AgcTgcA8080B.1.5341
ORF1ab/nsp3890A890VgCtgTt7575AY.40.000117
ORF1ab/nsp3890A890DgCtgAt7171B0.009075
ORF1ab/nsp3890A890DgCtgAt6666B.1.1600.002058
ORF1ab/nsp3890A890DgCtgAt6363B.1.1.2050.234201
ORF1ab/nsp3890A890DgCtgAt5959Q.51
ORF1ab/nsp3890A890DgCtgAt4848B.1.2210.00341
ORF1ab/nsp3890A890VgCtgTt4747B.1.10.000853
ORF1ab/nsp3890A890AgcTgcC4345AY.40.000067
ORF1ab/nsp3890A890AgcTgcA245AY.40.000003
ORF1ab/nsp3890A890DgCtgAt4545P.10.000709
ORF1ab/nsp3890A890delGCT---4444All0.000008
ORF1ab/nsp3890A890DgCtgAt4242B.1.5260.000987
ORF1ab/nsp3890A890VgCtgTt4141B.1.617.20.000154
ORF1ab/nsp3890A890DgCtgAt4040B.1.617.20.000151
ORF1ab/nsp3890A890VgCtgTt3838B.10.000348
ORF1ab/nsp3890A890DgCtgAt3838B.1.1.4090.107649
ORF1ab/nsp3890A890DgCtgAt3535AY.440.000213
ORF1ab/nsp3890A890DgCtgAt3333B.1.3510.000981
ORF1ab/nsp3890A890DgCtgAt3232B.1.177.70.005275
ORF1ab/nsp3890A890DgCtgAt3232B.1.6090.01534
ORF1ab/nsp3890A890NGCtAAt2929All0.000006
ORF1ab/nsp3890A890DgCtgAt2929P.1.10.009212
ORF1ab/nsp3890A890VgCtgTt2727B.1.1.70.000024
ORF1ab/nsp3890A890NGCtAAt2626B.1.1.70.000023
ORF1ab/nsp3890A890VgCtgTt2223AY.430.000097
ORF1ab/nsp3890A890VgCTgTA123AY.430.000004
ORF1ab/nsp3890A890AgcTgcG1823P.10.000284
ORF1ab/nsp3890A890AgcTgcC523P.10.000079
ORF1ab/nsp3890A890AgcTgcC2222AY.30.000219
ORF1ab/nsp3890A890DgCtgAt2222B.1.1.1610.077739
ORF1ab/nsp3890A890TGctAct2222B.1.20.000194
ORF1ab/nsp3890A890DgCtgAt1919B.1.1.5190.000755
ORF1ab/nsp3890A890DgCtgAt1818B.1.1.3120.034417
ORF1ab/nsp3890A890DgCtgAt1818B.1.4290.000424
ORF1ab/nsp3890A890TGctAct1717AY.440.000103
ORF1ab/nsp3890A890GgCtgGt1717B.1.5260.0004
ORF1ab/nsp3890A890DgCtgAt1717B.1.617.10.002192
ORF1ab/nsp3890A890SGctTct1616AY.440.000097
ORF1ab/nsp3890A890VgCtgTt1515AY.440.000091
ORF1ab/nsp3890A890VgCtgTt1414AY.116.10.00436
ORF1ab/nsp3890A890DgCtgAt1414B.1.1.2200.026022
ORF1ab/nsp3890A890DgCtgAt1414B.1.6200.013245
ORF1ab/nsp3890A890DgCtgAt1313B.1.1.5280.0625
ORF1ab/nsp3890A890DgCtgAt1212B.1.1.390.006116
ORF1ab/nsp3890A890DgCtgAt1212B.1.1.5070.104348
ORF1ab/nsp3890A890delGCT---1212B.1.1.70.000011
ORF1ab/nsp3890A890DgCtgAt11110.611111
ORF1ab/nsp3890A890VgCtgTt1111AY.330.000735
ORF1ab/nsp3890A890DgCtgAt1111AY.390.000272
ORF1ab/nsp3890A890DgCtgAt1111AY.430.000049
ORF1ab/nsp3890A890YGCtTAt1010All0.000002
ORF1ab/nsp3890A890TGctAct1010AY.1030.000062
ORF1ab/nsp3890A890VgCtgTt1010AY.1030.000062
ORF1ab/nsp3890A890VgCtgTt1010AY.1180.000626
ORF1ab/nsp3890A890AgcTgcC610B.10.000055
ORF1ab/nsp3890A890AgcTgcA410B.10.000037
ORF1ab/nsp3890A890AgcTgcC1010B.1.1.70.000009
ORF1ab/nsp3890A890AgcTgcC1010B.1.160.200.089286
ORF1ab/nsp3890A890AgcTgcC1010B.1.1770.000132
ORF1ab/nsp3890A890DgCtgAt1010P.1.160.003741
ORF1ab/nsp3890A890YGCtTAt99B.1.1.70.000008
ORF1ab/nsp3890A890DgCtgAt99B.1.2580.000599
ORF1ab/nsp3890A890DgCtgAt99B.1.6370.000658
ORF1ab/nsp3890A890PGctCct88All0.000002
ORF1ab/nsp3890A890DgCtgAt88AY.1020.000212
ORF1ab/nsp3890A890SGctTct88B.10.000073
ORF1ab/nsp3890A890AgcTgcC88B.1.351.20.002421
ORF1ab/nsp3890A890DgCtgAt88B.1.5800.03252
ORF1ab/nsp3890A890DgCtgAt88B.1.6230.004292
ORF1ab/nsp3890A890DgCtgAt88C.370.000929
ORF1ab/nsp3890A890VgCtgTt88P.10.000126
ORF1ab/nsp3890A890DgCtgAt88P.1.120.003872
ORF1ab/nsp3890A890del1gCtg-t47All0.000001
ORF1ab/nsp3890A890del1Gct-ct27All0
ORF1ab/nsp3890A890del1gcTgc-17All0
ORF1ab/nsp3890A890VgCtgTt77AY.1020.000186
ORF1ab/nsp3890A890SGctTct77AY.200.000272
ORF1ab/nsp3890A890VgCtgTt77AY.250.000042
ORF1ab/nsp3890A890DgCtgAt77AY.470.000218
ORF1ab/nsp3890A890AgcTgcC77AY.980.000553
ORF1ab/nsp3890A890DgCtgAt77B.1.4110.025926
ORF1ab/nsp3890A890TGctAct77B.1.617.20.000026
ORF1ab/nsp3890A890DgCtgAt77C.36.30.003971
ORF1ab/nsp3890A890DgCtgAt77P.1.150.001626
ORF1ab/nsp3890A890TGctAct66AY.40.000009
ORF1ab/nsp3890A890AgcTgcC56AY.430.000022
ORF1ab/nsp3890A890AgcTgcA16AY.430.000004
ORF1ab/nsp3890A890VgCtgTt66AY.5.30.002024
ORF1ab/nsp3890A890AgcTgcA46B.1.10.000073
ORF1ab/nsp3890A890AgcTgcC26B.1.10.000036
ORF1ab/nsp3890A890DgCtgAt66B.1.1.500.004073
ORF1ab/nsp3890A890VgCtgTt66B.1.1600.000187
ORF1ab/nsp3890A890DgCtgAt66B.1.177.410.015
ORF1ab/nsp3890A890AgcTgcC46B.1.20.000035
ORF1ab/nsp3890A890AgcTgcA26B.1.20.000018
ORF1ab/nsp3890A890DgCtgAt66B.1.4270.000303
ORF1ab/nsp3890A890DgCtgAt66B.1.5330.057692
ORF1ab/nsp3890A890SGctTct66B.1.617.20.000023
ORF1ab/nsp3890A890TGctAct55AY.1020.000133
ORF1ab/nsp3890A890AgcTgcC45AY.1030.000025
ORF1ab/nsp3890A890AgcTgcG15AY.1030.000006
ORF1ab/nsp3890A890VgCtgTt55AY.30.00005
ORF1ab/nsp3890A890SGctTct45AY.30.00004
ORF1ab/nsp3890A890SGcTTcG15AY.30.00001
ORF1ab/nsp3890A890DgCtgAt55AY.300.001979
ORF1ab/nsp3890A890DgCtgAt55B.1.1.100.005574
ORF1ab/nsp3890A890AgcTgcC55B.1.1.2840.000537
ORF1ab/nsp3890A890DgCtgAt55B.1.1390.003666
ORF1ab/nsp3890A890VgCtgTt55B.1.20.000044
ORF1ab/nsp3890A890DgCtgAt55B.1.2340.00066
ORF1ab/nsp3890A890DgCtgAt55B.1.2430.000348
ORF1ab/nsp3890A890DgCtgAt44A.2.50.001996
ORF1ab/nsp3890A890DgCtgAt44AD.20.000876
ORF1ab/nsp3890A890VgCtgTt44AY.1010.001962
ORF1ab/nsp3890A890VgCtgTt44AY.200.000155
ORF1ab/nsp3890A890TGctAct44AY.250.000024
ORF1ab/nsp3890A890DgCtgAt44AY.250.000024
ORF1ab/nsp3890A890AgcTgcC44AY.250.000024
ORF1ab/nsp3890A890VgCtgTt44AY.390.000099
ORF1ab/nsp3890A890DgCtgAt44AY.450.000487
ORF1ab/nsp3890A890VgCtgTt44AY.5.40.001107
ORF1ab/nsp3890A890AgcTgcC44AY.90.00027
ORF1ab/nsp3890A890DgCtgAt44B.1.1.10.001307
ORF1ab/nsp3890A890DgCtgAt44B.1.1.280.001245
ORF1ab/nsp3890A890DgCtgAt44B.1.1.5240.083333
ORF1ab/nsp3890A890DgCtgAt44B.1.1.700.001364
ORF1ab/nsp3890A890TGctAct44B.1.160.310.032258
ORF1ab/nsp3890A890AgcTgcA24B.1.2580.000133
ORF1ab/nsp3890A890AgcTgcC24B.1.2580.000133
ORF1ab/nsp3890A890DgCtgAt44B.1.3110.001098
ORF1ab/nsp3890A890DgCtgAt44B.1.3300.114286
ORF1ab/nsp3890A890SGctTct44B.1.4290.000094
ORF1ab/nsp3890A890DgCtgAt44B.1.5950.001044
ORF1ab/nsp3890A890DgCtgAt44B.1.5990.014599
ORF1ab/nsp3890A890AgcTgcC44B.1.617.20.000015
ORF1ab/nsp3890A890DgCtgAt44B.1.6330.166667
ORF1ab/nsp3890A890DgCtgAt44P.1.60.007782
ORF1ab/nsp3890A890DgCtgAt44P.1.70.001277
ORF1ab/nsp3890A890DgCtgAt44R.10.00036
ORF1ab/nsp3890A890AgcTgcC33AY.1000.000138
ORF1ab/nsp3890A890AgcTgcC33AY.1180.000188
ORF1ab/nsp3890A890VgCtgTt33AY.1200.000112
ORF1ab/nsp3890A890DgCtgAt33AY.230.000209
ORF1ab/nsp3890A890DgCtgAt33AY.260.000085
ORF1ab/nsp3890A890AgcTgcC33AY.340.000291
ORF1ab/nsp3890A890TGctAct33AY.390.000074
ORF1ab/nsp3890A890VgCtgTt33AY.39.10.000119
ORF1ab/nsp3890A890delGCT---33AY.40.000005
ORF1ab/nsp3890A890SGctTct33AY.430.000013
ORF1ab/nsp3890A890VgCtgTt33AY.50.000062
ORF1ab/nsp3890A890DgCtgAt33AY.520.002443
ORF1ab/nsp3890A890SGctTct33AY.740.000347
ORF1ab/nsp3890A890DgCtgAt33AY.75.10.000541
ORF1ab/nsp3890A890DgCtgAt33B.1.1.250.001706
ORF1ab/nsp3890A890DgCtgAt33B.1.1.3700.037975
ORF1ab/nsp3890A890DgCtgAt33B.1.1.5250.016393
ORF1ab/nsp3890A890DgCtgAt33B.1.160.160.002788
ORF1ab/nsp3890A890DgCtgAt33B.1.1700.012931
ORF1ab/nsp3890A890VgCtgTt33B.1.1770.00004
ORF1ab/nsp3890A890DgCtgAt33B.1.177.160.001993
ORF1ab/nsp3890A890DgCtgAt33B.1.177.310.034483
ORF1ab/nsp3890A890VgCtgTt33B.1.177.70.000495
ORF1ab/nsp3890A890VgCtgTt33B.1.177.860.00055
ORF1ab/nsp3890A890delGCT---33B.1.20.000026
ORF1ab/nsp3890A890DgCtgAt33B.1.2140.010989
ORF1ab/nsp3890A890DgCtgAt33B.1.258.170.000312
ORF1ab/nsp3890A890DgCtgAt33B.1.3670.002377
ORF1ab/nsp3890A890VgCtgTt33B.1.3750.002459
ORF1ab/nsp3890A890VgCtgTt33B.1.4290.000071
ORF1ab/nsp3890A890DgCtgAt33B.1.4620.021739
ORF1ab/nsp3890A890AgcTgcC33B.1.6210.000266
ORF1ab/nsp3890A890DgCtgAt33B.1.6250.007059
ORF1ab/nsp3890A890DgCtgAt33B.1.780.025641
ORF1ab/nsp3890A890TGctAct33P.10.000047
ORF1ab/nsp3890A890VgCtgTt33R.10.00027
ORF1ab/nsp3890A890GgCtgGt120.055556
ORF1ab/nsp3890A890GgCTgGA120.055556
ORF1ab/nsp3890A890DgCtgAt22A0.000774
ORF1ab/nsp3890A890PGctCct22AY.1000.000092
ORF1ab/nsp3890A890DgCtgAt22AY.1030.000012
ORF1ab/nsp3890A890VgCtgTt22AY.1070.000932
ORF1ab/nsp3890A890VgCtgTt22AY.1100.000225
ORF1ab/nsp3890A890DgCtgAt22AY.1170.000169
ORF1ab/nsp3890A890VgCtgTt22AY.1190.000071
ORF1ab/nsp3890A890AgcTgcC22AY.1190.000071
ORF1ab/nsp3890A890AgcTgcG12AY.260.000028
ORF1ab/nsp3890A890AgcTgcC12AY.260.000028
ORF1ab/nsp3890A890DgCtgAt22AY.290.000032
ORF1ab/nsp3890A890VgCtgTt22AY.340.000194
ORF1ab/nsp3890A890AgcTgcC22AY.390.000049
ORF1ab/nsp3890A890DgCtgAt22AY.4.2.10.000298
ORF1ab/nsp3890A890VgCtgTt22AY.420.00008
ORF1ab/nsp3890A890delGCT---22AY.430.000009
ORF1ab/nsp3890A890DgCtgAt22AY.50.000041
ORF1ab/nsp3890A890SGctTct22AY.610.00021
ORF1ab/nsp3890A890DgCtgAt22AY.670.000929
ORF1ab/nsp3890A890DgCtgAt22AY.680.000547
ORF1ab/nsp3890A890DgCtgAt22AY.750.000112
ORF1ab/nsp3890A890DgCtgAt22AY.920.000575
ORF1ab/nsp3890A890DgCtgAt22AZ.30.00304
ORF1ab/nsp3890A890SGctTct22B0.000256
ORF1ab/nsp3890A890GgCtgGt22B.1.10.000036
ORF1ab/nsp3890A890AgcTgcC22B.1.1.10.000653
ORF1ab/nsp3890A890DgCtgAt22B.1.1.1410.004024
ORF1ab/nsp3890A890AgcTgcC22B.1.1.2740.010101
ORF1ab/nsp3890A890DgCtgAt22B.1.1.2910.001485
ORF1ab/nsp3890A890DgCtgAt22B.1.1.2940.002532
ORF1ab/nsp3890A890DgCtgAt22B.1.1.2990.02439
ORF1ab/nsp3890A890DgCtgAt22B.1.1.3060.000877
ORF1ab/nsp3890A890DgCtgAt22B.1.1.3150.016949
ORF1ab/nsp3890A890DgCtgAt22B.1.1.3180.000604
ORF1ab/nsp3890A890DgCtgAt22B.1.1.3720.001377
ORF1ab/nsp3890A890DgCtgAt22B.1.1.3890.012121
ORF1ab/nsp3890A890DgCtgAt22B.1.1.4620.017241
ORF1ab/nsp3890A890AgcTgcC22B.1.1.5190.000079
ORF1ab/nsp3890A890del1gCtg-t22B.1.1.70.000002
ORF1ab/nsp3890A890SGctTct22B.1.1600.000062
ORF1ab/nsp3890A890delGCT---22B.1.1600.000062
ORF1ab/nsp3890A890VgCtgTt22B.1.177.330.003289
ORF1ab/nsp3890A890DgCtgAt22B.1.177.500.00939
ORF1ab/nsp3890A890DgCtgAt22B.1.177.820.000955
ORF1ab/nsp3890A890AgcTgcA22B.1.177.830.002963
ORF1ab/nsp3890A890DgCtgAt22B.1.2060.001631
ORF1ab/nsp3890A890DgCtgAt22B.1.214.30.014286
ORF1ab/nsp3890A890VgCtgTt22B.1.2210.000142
ORF1ab/nsp3890A890DgCtgAt22B.1.2370.00995
ORF1ab/nsp3890A890AgcTgcA12B.1.3510.00003
ORF1ab/nsp3890A890AgcTgcC12B.1.3510.00003
ORF1ab/nsp3890A890delGCT---22B.1.360.000292
ORF1ab/nsp3890A890DgCtgAt22B.1.415.10.015152
ORF1ab/nsp3890A890DgCtgAt22B.1.466.20.000782
ORF1ab/nsp3890A890DgCtgAt22B.1.4700.002809
ORF1ab/nsp3890A890DgCtgAt22B.1.5300.014286
ORF1ab/nsp3890A890VgCtgTt22B.1.5640.000852
ORF1ab/nsp3890A890DgCtgAt22B.1.5640.000852
ORF1ab/nsp3890A890AgcTgcC22B.1.5650.001621
ORF1ab/nsp3890A890DgCtgAt22B.1.5750.000607
ORF1ab/nsp3890A890SGctTct22B.1.5960.000174
ORF1ab/nsp3890A890delGCT---22B.1.617.20.000008
ORF1ab/nsp3890A890DgCtgAt22B.1.6190.001742
ORF1ab/nsp3890A890DgCtgAt22B.1.6280.000705
ORF1ab/nsp3890A890DgCtgAt22C.360.001821
ORF1ab/nsp3890A890DgCtgAt22P.1.10.10.01626
ORF1ab/nsp3890A890DgCtgAt22P.1.130.001797
ORF1ab/nsp3890A890DgCtgAt22P.1.170.000324
ORF1ab/nsp3890A890TGctAct22P.20.000373
ORF1ab/nsp3890A890DgCtgAt22P.30.00319
ORF1ab/nsp3890A890AgcTgcC22R.10.00018
ORF1ab/nsp3890A890EgCTgAA110.055556
ORF1ab/nsp3890A890del1gcTgc-11A0.000387
ORF1ab/nsp3890A890del2GCTA--11A0.000387
ORF1ab/nsp3890A890delGCT---11A.2.20.001689
ORF1ab/nsp3890A890DgCtgAt11A.2.5.20.001572
ORF1ab/nsp3890A890DgCtgAt11A.210.00277
ORF1ab/nsp3890A890DgCtgAt11A.270.001656
ORF1ab/nsp3890A890DgCtgAt11A.70.055556
ORF1ab/nsp3890A890AgcTgcC11AD.20.000219
ORF1ab/nsp3890A890delGCT---11AD.20.000219
ORF1ab/nsp3890A890AgcTgcC11AE.80.000489
ORF1ab/nsp3890A890delGCT---11AH.30.003802
ORF1ab/nsp3890A890EgCTgAA11All0
ORF1ab/nsp3890A890del2GCTA--11All0
ORF1ab/nsp3890A890DgCtgAt11AT.10.005128
ORF1ab/nsp3890A890VgCtgTt11AY.1000.000046
ORF1ab/nsp3890A890TGctAct11AY.1000.000046
ORF1ab/nsp3890A890AgcTgcG11AY.1010.00049
ORF1ab/nsp3890A890SGctTct11AY.1020.000027
ORF1ab/nsp3890A890VgCtgTt11AY.1060.000335
ORF1ab/nsp3890A890delGCT---11AY.1080.001103
ORF1ab/nsp3890A890AgcTgcA11AY.1110.000183
ORF1ab/nsp3890A890AgcTgcC11AY.1140.000231
ORF1ab/nsp3890A890AgcTgcC11AY.1170.000085
ORF1ab/nsp3890A890TGctAct11AY.1190.000035
ORF1ab/nsp3890A890DgCtgAt11AY.120.000316
ORF1ab/nsp3890A890VgCtgTt11AY.120.000316
ORF1ab/nsp3890A890SGctTct11AY.1200.000037
ORF1ab/nsp3890A890AgcTgcC11AY.1200.000037
ORF1ab/nsp3890A890SGctTct11AY.1210.000135
ORF1ab/nsp3890A890DgCtgAt11AY.1210.000135
ORF1ab/nsp3890A890DgCtgAt11AY.130.000161
ORF1ab/nsp3890A890SGctTct11AY.140.000088
ORF1ab/nsp3890A890AgcTgcC11AY.190.00114
ORF1ab/nsp3890A890DgCtgAt11AY.20.000356
ORF1ab/nsp3890A890PGctCct11AY.230.00007
ORF1ab/nsp3890A890VgCtgTt11AY.230.00007
ORF1ab/nsp3890A890SGctTct11AY.270.000065
ORF1ab/nsp3890A890SGctTct11AY.280.00189
ORF1ab/nsp3890A890TGctAct11AY.30.00001
ORF1ab/nsp3890A890DgCtgAt11AY.350.000233
ORF1ab/nsp3890A890VgCtgTt11AY.360.000148
ORF1ab/nsp3890A890DgCtgAt11AY.360.000148
ORF1ab/nsp3890A890AgcTgcC11AY.370.000316
ORF1ab/nsp3890A890del1Gct-ct11AY.40.000002
ORF1ab/nsp3890A890VgCtgTt11AY.4.20.000022
ORF1ab/nsp3890A890TGctAct11AY.4.20.000022
ORF1ab/nsp3890A890DgCtgAt11AY.4.50.000107
ORF1ab/nsp3890A890TGctAct11AY.430.000004
ORF1ab/nsp3890A890delGCT---11AY.440.000006
ORF1ab/nsp3890A890AgcTgcC11AY.440.000006
ORF1ab/nsp3890A890DgCtgAt11AY.460.000104
ORF1ab/nsp3890A890AgcTgcC11AY.46.40.000165
ORF1ab/nsp3890A890SGctTct11AY.46.40.000165
ORF1ab/nsp3890A890DgCtgAt11AY.46.60.000072
ORF1ab/nsp3890A890VgCtgTt11AY.46.60.000072
ORF1ab/nsp3890A890AgcTgcC11AY.470.000031
ORF1ab/nsp3890A890GgCtgGt11AY.50.000021
ORF1ab/nsp3890A890AgcTgcC11AY.5.20.002463
ORF1ab/nsp3890A890DgCtgAt11AY.5.40.000277
ORF1ab/nsp3890A890DgCtgAt11AY.530.000288
ORF1ab/nsp3890A890TGctAct11AY.60.000041
ORF1ab/nsp3890A890VgCtgTt11AY.60.000041
ORF1ab/nsp3890A890AgcTgcC11AY.600.000938
ORF1ab/nsp3890A890DgCtgAt11AY.610.000105
ORF1ab/nsp3890A890DgCtgAt11AY.620.000436
ORF1ab/nsp3890A890delGCT---11AY.660.00107
ORF1ab/nsp3890A890delGCT---11AY.670.000464
ORF1ab/nsp3890A890AgcTgcC11AY.690.000187
ORF1ab/nsp3890A890delGCT---11AY.70.000196
ORF1ab/nsp3890A890VgCtgTt11AY.70.000196
ORF1ab/nsp3890A890DgCtgAt11AY.70.000196
ORF1ab/nsp3890A890VgCtgTt11AY.7.10.000113
ORF1ab/nsp3890A890DgCtgAt11AY.700.000209
ORF1ab/nsp3890A890TGctAct11AY.820.001357
ORF1ab/nsp3890A890DgCtgAt11AY.90.000068
ORF1ab/nsp3890A890AgcTgcC11AY.9.20.000037
ORF1ab/nsp3890A890AgcTgcC11AY.910.00073
ORF1ab/nsp3890A890VgCtgTt11AY.920.000287
ORF1ab/nsp3890A890AgcTgcC11AY.930.000273
ORF1ab/nsp3890A890DgCtgAt11AY.930.000273
ORF1ab/nsp3890A890DgCtgAt11AY.950.000761
ORF1ab/nsp3890A890DgCtgAt11AY.980.000079
ORF1ab/nsp3890A890SGctTct11AY.990.001049
ORF1ab/nsp3890A890delGCT---11AY.990.001049
ORF1ab/nsp3890A890VgCtgTt11AY.99.20.000092
ORF1ab/nsp3890A890AgcTgcC11AY.99.20.000092
ORF1ab/nsp3890A890VgCtgTt11AZ.10.000867
ORF1ab/nsp3890A890TGctAct11B.10.000009
ORF1ab/nsp3890A890YGCtTAt11B.10.000009
ORF1ab/nsp3890A890delGCT---11B.1.10.000018
ORF1ab/nsp3890A890SGctTct11B.1.10.000018
ORF1ab/nsp3890A890del1gCtg-t11B.1.10.000018
ORF1ab/nsp3890A890NGCtAAt11B.1.10.000018
ORF1ab/nsp3890A890DgCtgAt11B.1.1.1350.004695
ORF1ab/nsp3890A890delGCT---11B.1.1.1420.017544
ORF1ab/nsp3890A890DgCtgAt11B.1.1.1530.001095
ORF1ab/nsp3890A890delGCT---11B.1.1.1590.004673
ORF1ab/nsp3890A890DgCtgAt11B.1.1.1710.003676
ORF1ab/nsp3890A890DgCtgAt11B.1.1.1870.00885
ORF1ab/nsp3890A890DgCtgAt11B.1.1.2070.001182
ORF1ab/nsp3890A890AgcTgcC11B.1.1.2140.000055
ORF1ab/nsp3890A890VgCtgTt11B.1.1.2140.000055
ORF1ab/nsp3890A890DgCtgAt11B.1.1.2210.010101
ORF1ab/nsp3890A890AgcTgcC11B.1.1.2220.000204
ORF1ab/nsp3890A890DgCtgAt11B.1.1.2310.003096
ORF1ab/nsp3890A890DgCtgAt11B.1.1.2360.006897
ORF1ab/nsp3890A890DgCtgAt11B.1.1.2370.005405
ORF1ab/nsp3890A890DgCtgAt11B.1.1.2540.011236
ORF1ab/nsp3890A890DgCtgAt11B.1.1.2580.003257
ORF1ab/nsp3890A890DgCtgAt11B.1.1.2690.001353
ORF1ab/nsp3890A890DgCtgAt11B.1.1.2770.000759
ORF1ab/nsp3890A890SGctTct11B.1.1.280.000311
ORF1ab/nsp3890A890DgCtgAt11B.1.1.3010.001179
ORF1ab/nsp3890A890DgCtgAt11B.1.1.3110.000358
ORF1ab/nsp3890A890DgCtgAt11B.1.1.3170.000412
ORF1ab/nsp3890A890DgCtgAt11B.1.1.340.013158
ORF1ab/nsp3890A890DgCtgAt11B.1.1.3740.002375
ORF1ab/nsp3890A890VgCtgTt11B.1.1.390.00051
ORF1ab/nsp3890A890AgcTgcC11B.1.1.40.002976
ORF1ab/nsp3890A890DgCtgAt11B.1.1.4060.006494
ORF1ab/nsp3890A890DgCtgAt11B.1.1.4370.010417
ORF1ab/nsp3890A890DgCtgAt11B.1.1.440.00241
ORF1ab/nsp3890A890del1gCtg-t11B.1.1.4480.002033
ORF1ab/nsp3890A890DgCtgAt11B.1.1.4480.002033
ORF1ab/nsp3890A890TGcTAcA11B.1.1.5190.00004
ORF1ab/nsp3890A890VgCtgTt11B.1.1.5230.001563
ORF1ab/nsp3890A890DgCtgAt11B.1.1.5230.001563
ORF1ab/nsp3890A890DgCtgAt11B.1.1.550.012987
ORF1ab/nsp3890A890DgCtgAt11B.1.1.630.000386
ORF1ab/nsp3890A890AgcTgcG11B.1.1.700.000341
ORF1ab/nsp3890A890VgCtgTt11B.1.1.750.010638
ORF1ab/nsp3890A890DgCtgAt11B.1.1.830.00271
ORF1ab/nsp3890A890DgCtgAt11B.1.1.890.006061
ORF1ab/nsp3890A890DgCtgAt11B.1.1.990.02381
ORF1ab/nsp3890A890DgCtgAt11B.1.110.30.000718
ORF1ab/nsp3890A890PGctCct11B.1.1130.015625
ORF1ab/nsp3890A890VgCtgTt11B.1.1280.000635
ORF1ab/nsp3890A890DgCtgAt11B.1.1400.018868
ORF1ab/nsp3890A890DgCtgAt11B.1.1430.021277
ORF1ab/nsp3890A890DgCtgAt11B.1.1570.002985
ORF1ab/nsp3890A890TGctAct11B.1.1600.000031
ORF1ab/nsp3890A890DgCtgAt11B.1.160.100.008065
ORF1ab/nsp3890A890DgCtgAt11B.1.160.130.027778
ORF1ab/nsp3890A890DgCtgAt11B.1.160.140.002119
ORF1ab/nsp3890A890DgCtgAt11B.1.160.170.001701
ORF1ab/nsp3890A890DgCtgAt11B.1.160.240.004425
ORF1ab/nsp3890A890DgCtgAt11B.1.160.260.002421
ORF1ab/nsp3890A890DgCtgAt11B.1.160.70.002079
ORF1ab/nsp3890A890DgCtgAt11B.1.160.80.001289
ORF1ab/nsp3890A890TGctAct11B.1.1770.000013
ORF1ab/nsp3890A890SGctTct11B.1.1770.000013
ORF1ab/nsp3890A890DgCtgAt11B.1.177.150.000631
ORF1ab/nsp3890A890VgCtgTt11B.1.177.160.000664
ORF1ab/nsp3890A890delGCT---11B.1.177.160.000664
ORF1ab/nsp3890A890DgCtgAt11B.1.177.210.000076
ORF1ab/nsp3890A890VgCtgTt11B.1.177.210.000076
ORF1ab/nsp3890A890DgCtgAt11B.1.177.350.000691
ORF1ab/nsp3890A890delGCT---11B.1.177.40.000211
ORF1ab/nsp3890A890DgCtgAt11B.1.177.420.000894
ORF1ab/nsp3890A890DgCtgAt11B.1.177.440.000519
ORF1ab/nsp3890A890DgCtgAt11B.1.177.510.004566
ORF1ab/nsp3890A890DgCtgAt11B.1.177.520.001757
ORF1ab/nsp3890A890DgCtgAt11B.1.177.540.000606
ORF1ab/nsp3890A890DgCtgAt11B.1.177.580.001332
ORF1ab/nsp3890A890DgCtgAt11B.1.177.600.000218
ORF1ab/nsp3890A890DgCtgAt11B.1.177.670.007634
ORF1ab/nsp3890A890VgCtgTt11B.1.177.730.000566
ORF1ab/nsp3890A890DgCtgAt11B.1.177.810.000189
ORF1ab/nsp3890A890DgCtgAt11B.1.177.860.000183
ORF1ab/nsp3890A890DgCtgAt11B.1.177.90.001332
ORF1ab/nsp3890A890DgCtgAt11B.1.1790.003759
ORF1ab/nsp3890A890VgCtgTt11B.1.2060.000816
ORF1ab/nsp3890A890DgCtgAt11B.1.214.20.0006
ORF1ab/nsp3890A890TGctAct11B.1.2210.000071
ORF1ab/nsp3890A890AgcTgcA11B.1.2210.000071
ORF1ab/nsp3890A890VgCtgTt11B.1.2360.002053
ORF1ab/nsp3890A890DgCtgAt11B.1.2390.001221
ORF1ab/nsp3890A890VgCtgTt11B.1.2400.000216
ORF1ab/nsp3890A890SGctTct11B.1.2400.000216
ORF1ab/nsp3890A890VgCtgTt11B.1.2410.000812
ORF1ab/nsp3890A890SGctTct11B.1.2430.00007
ORF1ab/nsp3890A890NGCtAAt11B.1.2580.000067
ORF1ab/nsp3890A890DgCtgAt11B.1.258.140.00098
ORF1ab/nsp3890A890DgCtgAt11B.1.2650.001271
ORF1ab/nsp3890A890DgCtgAt11B.1.2680.010417
ORF1ab/nsp3890A890VgCtgTt11B.1.2790.000514
ORF1ab/nsp3890A890delGCT---11B.1.3190.003049
ORF1ab/nsp3890A890DgCtgAt11B.1.3490.000715
ORF1ab/nsp3890A890PGctCct11B.1.3510.00003
ORF1ab/nsp3890A890VgCtgTt11B.1.360.000146
ORF1ab/nsp3890A890DgCtgAt11B.1.360.000146
ORF1ab/nsp3890A890DgCtgAt11B.1.36.10.00114
ORF1ab/nsp3890A890TGctAct11B.1.36.180.00042
ORF1ab/nsp3890A890SGctTct11B.1.36.270.000763
ORF1ab/nsp3890A890DgCtgAt11B.1.3690.000285
ORF1ab/nsp3890A890DgCtgAt11B.1.3800.006623
ORF1ab/nsp3890A890DgCtgAt11B.1.3810.007812
ORF1ab/nsp3890A890DgCtgAt11B.1.3990.001934
ORF1ab/nsp3890A890VgCtgTt11B.1.4030.003268
ORF1ab/nsp3890A890delGCT---11B.1.4150.014286
ORF1ab/nsp3890A890DgCtgAt11B.1.4280.00102
ORF1ab/nsp3890A890DgCtgAt11B.1.4330.003195
ORF1ab/nsp3890A890VgCtgTt11B.1.438.10.000107
ORF1ab/nsp3890A890AgcTgcC11B.1.4660.023256
ORF1ab/nsp3890A890DgCtgAt11B.1.4730.019231
ORF1ab/nsp3890A890DgCtgAt11B.1.4970.000315
ORF1ab/nsp3890A890SGctTct11B.1.4990.00105
ORF1ab/nsp3890A890AgcTgcC11B.1.4990.00105
ORF1ab/nsp3890A890DgCtgAt11B.1.5170.000427
ORF1ab/nsp3890A890AgcTgcC11B.1.5170.000427
ORF1ab/nsp3890A890DgCtgAt11B.1.5210.004975
ORF1ab/nsp3890A890TGctAct11B.1.5250.000113
ORF1ab/nsp3890A890PGctCct11B.1.5260.000024
ORF1ab/nsp3890A890TGctAct11B.1.5260.000024
ORF1ab/nsp3890A890VgCtgTt11B.1.5260.000024
ORF1ab/nsp3890A890VgCtgTt11B.1.5460.003704
ORF1ab/nsp3890A890DgCtgAt11B.1.5610.000397
ORF1ab/nsp3890A890DgCtgAt11B.1.5740.002151
ORF1ab/nsp3890A890VgCtgTt11B.1.5740.002151
ORF1ab/nsp3890A890VgCtgTt11B.1.5800.004065
ORF1ab/nsp3890A890VgCtgTt11B.1.5950.000261
ORF1ab/nsp3890A890GgCtgGt11B.1.5960.000087
ORF1ab/nsp3890A890PGctCct11B.1.617.20.000004
ORF1ab/nsp3890A890del1Gct-ct11B.1.617.20.000004
ORF1ab/nsp3890A890delGCT---11B.1.6210.000089
ORF1ab/nsp3890A890DgCtgAt11B.1.6210.000089
ORF1ab/nsp3890A890DgCtgAt11B.1.6270.00202
ORF1ab/nsp3890A890VgCtgTt11B.1.6280.000352
ORF1ab/nsp3890A890DgCtgAt11B.1.940.027027
ORF1ab/nsp3890A890delGCT---11B.150.017544
ORF1ab/nsp3890A890VgCtgTt11B.290.003509
ORF1ab/nsp3890A890AgcTgcC11C.160.00106
ORF1ab/nsp3890A890DgCtgAt11C.37.10.002618
ORF1ab/nsp3890A890VgCtgTt11C.390.018868
ORF1ab/nsp3890A890VgCtgTt11C.80.004464
ORF1ab/nsp3890A890TGctAct11D.20.000075
ORF1ab/nsp3890A890VgCtgTt11D.20.000075
ORF1ab/nsp3890A890PGctCct11D.20.000075
ORF1ab/nsp3890A890DgCtgAt11N.50.001767
ORF1ab/nsp3890A890VgCtgTt11P.1.10.000318
ORF1ab/nsp3890A890DgCtgAt11P.1.100.000269
ORF1ab/nsp3890A890VgCtgTt11P.20.000187
ORF1ab/nsp3890A890NGCtAAt11Q.30.000145
ORF1ab/nsp3890A890VgCtgTt11Q.80.000165