CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 882

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp3	882	Y882Y	Y1700Y	syn	taC	taT	47710	47710	1	5363-5365
ORF1ab/nsp3	882	Y882del	Y1700del	del	TAC	---	60	60	1	5363-5365
ORF1ab/nsp3	882	Y882C	Y1700C	nonsyn	tAc	tGc	13	13	1	5363-5365
ORF1ab/nsp3	882	Y882H	Y1700H	nonsyn	Tac	Cac	6	6	1	5363-5365
ORF1ab/nsp3	882	Y882F	Y1700F	nonsyn	tAc	tTc	4	4	1	5363-5365
ORF1ab/nsp3	882	Y882X	Y1700X	nonsyn	taC	taG	4	2	0.5	5363-5365
ORF1ab/nsp3	882	Y882X	Y1700X	nonsyn	taC	taA	4	2	0.5	5363-5365
ORF1ab/nsp3	882	Y882G	Y1700G	nonsyn	TAc	GGc	3	3	1	5363-5365
ORF1ab/nsp3	882	Y882N	Y1700N	nonsyn	Tac	Aac	3	3	1	5363-5365
ORF1ab/nsp3	882	Y882P	Y1700P	nonsyn	TAc	CCc	3	2	0.666667	5363-5365
ORF1ab/nsp3	882	Y882P	Y1700P	nonsyn	TAC	CCG	3	1	0.333333	5363-5365
ORF1ab/nsp3	882	Y882D	Y1700D	nonsyn	Tac	Gac	2	2	1	5363-5365
ORF1ab/nsp3	882	Y882A	Y1700A	nonsyn	TAc	GCc	2	1	0.5	5363-5365
ORF1ab/nsp3	882	Y882A	Y1700A	nonsyn	TAC	GCG	2	1	0.5	5363-5365
ORF1ab/nsp3	882	Y882del1	Y1700del1	del	Tac	-ac	2	1	0.5	5363-5365
ORF1ab/nsp3	882	Y882del1	Y1700del1	del	taC	ta-	2	1	0.5	5363-5365
ORF1ab/nsp3	882	Y882del2	Y1700del2	del	tAC	t--	1	1	1	5363-5365
ORF1ab/nsp3	882	Y882Q	Y1700Q	nonsyn	TaC	CaG	1	1	1	5363-5365
ORF1ab/nsp3	882	Y882E	Y1700E	nonsyn	TaC	GaG	1	1	1	5363-5365

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp3	882	Y882Y	taC	taT	47710	47710	All	0.009125
ORF1ab/nsp3	882	Y882Y	taC	taT	34786	34786	AY.29	0.548701
ORF1ab/nsp3	882	Y882Y	taC	taT	2055	2055	B.1.1.7	0.00184
ORF1ab/nsp3	882	Y882Y	taC	taT	1923	1923	AY.4	0.002993
ORF1ab/nsp3	882	Y882Y	taC	taT	1435	1435	B.1.1.214	0.079581
ORF1ab/nsp3	882	Y882Y	taC	taT	566	566	AY.29.1	0.124807
ORF1ab/nsp3	882	Y882Y	taC	taT	470	470	B.1.160	0.014658
ORF1ab/nsp3	882	Y882Y	taC	taT	408	408	B.1.617.2	0.001536
ORF1ab/nsp3	882	Y882Y	taC	taT	370	370	AY.43	0.001639
ORF1ab/nsp3	882	Y882Y	taC	taT	363	363	AY.120	0.013496
ORF1ab/nsp3	882	Y882Y	taC	taT	324	324	B.1.36	0.047272
ORF1ab/nsp3	882	Y882Y	taC	taT	279	279	B.1.2	0.002457
ORF1ab/nsp3	882	Y882Y	taC	taT	259	259	AY.25	0.001558
ORF1ab/nsp3	882	Y882Y	taC	taT	232	232	B.1.177.12	0.035194
ORF1ab/nsp3	882	Y882Y	taC	taT	206	206	B.1	0.001887
ORF1ab/nsp3	882	Y882Y	taC	taT	197	197	B.1.429	0.004635
ORF1ab/nsp3	882	Y882Y	taC	taT	189	189	AY.74	0.021857
ORF1ab/nsp3	882	Y882Y	taC	taT	150	150	P.1	0.002363
ORF1ab/nsp3	882	Y882Y	taC	taT	139	139	D.2	0.010431
ORF1ab/nsp3	882	Y882Y	taC	taT	139	139	N.6	0.985816
ORF1ab/nsp3	882	Y882Y	taC	taT	136	136	AY.103	0.000844
ORF1ab/nsp3	882	Y882Y	taC	taT	132	132	A.2.5	0.065868
ORF1ab/nsp3	882	Y882Y	taC	taT	124	124	B.1.421	0.925373
ORF1ab/nsp3	882	Y882Y	taC	taT	123	123	AY.44	0.000749
ORF1ab/nsp3	882	Y882Y	taC	taT	113	113	B.1.427	0.005706
ORF1ab/nsp3	882	Y882Y	taC	taT	103	103	B.1.561	0.040889
ORF1ab/nsp3	882	Y882Y	taC	taT	99	99	AY.98.1	0.004795
ORF1ab/nsp3	882	Y882Y	taC	taT	94	94	AY.12	0.029709
ORF1ab/nsp3	882	Y882Y	taC	taT	91	91	AY.117	0.007691
ORF1ab/nsp3	882	Y882Y	taC	taT	90	90	B.1.177	0.001185
ORF1ab/nsp3	882	Y882Y	taC	taT	86	86	AY.3	0.000855
ORF1ab/nsp3	882	Y882Y	taC	taT	78	78	AY.36	0.011561
ORF1ab/nsp3	882	Y882Y	taC	taT	74	74	AY.93	0.020208
ORF1ab/nsp3	882	Y882Y	taC	taT	74	74	B.1.400	0.031746
ORF1ab/nsp3	882	Y882Y	taC	taT	70	70	B.1.1	0.00127
ORF1ab/nsp3	882	Y882Y	taC	taT	63	63	P.1.14	0.003011
ORF1ab/nsp3	882	Y882del	TAC	---	60	60	All	0.000011
ORF1ab/nsp3	882	Y882Y	taC	taT	60	60	AY.102	0.001591
ORF1ab/nsp3	882	Y882Y	taC	taT	53	53	AY.39	0.00131
ORF1ab/nsp3	882	Y882Y	taC	taT	47	47	B.1.243	0.00327
ORF1ab/nsp3	882	Y882Y	taC	taT	45	45	B.1.351	0.001338
ORF1ab/nsp3	882	Y882Y	taC	taT	42	42	R.1	0.00378
ORF1ab/nsp3	882	Y882Y	taC	taT	36	36	AY.9.2	0.001322
ORF1ab/nsp3	882	Y882Y	taC	taT	34	34	B.1.637	0.002484
ORF1ab/nsp3	882	Y882Y	taC	taT	30	30	B.1.1.519	0.001191
ORF1ab/nsp3	882	Y882Y	taC	taT	30	30	B.1.526	0.000705
ORF1ab/nsp3	882	Y882Y	taC	taT	30	30	B.1.621	0.002656
ORF1ab/nsp3	882	Y882Y	taC	taT	26	26	AY.118	0.001629
ORF1ab/nsp3	882	Y882Y	taC	taT	26	26	AY.47	0.000809
ORF1ab/nsp3	882	Y882Y	taC	taT	24	24	AY.42	0.000966
ORF1ab/nsp3	882	Y882Y	taC	taT	23	23	B.1.456	0.075163
ORF1ab/nsp3	882	Y882Y	taC	taT	21	21	B.1.517	0.008967
ORF1ab/nsp3	882	Y882Y	taC	taT	20	20	AY.27	0.001294
ORF1ab/nsp3	882	Y882del	TAC	---	20	20	B.1.1.7	0.000018
ORF1ab/nsp3	882	Y882Y	taC	taT	19	19	AY.75	0.001064
ORF1ab/nsp3	882	Y882Y	taC	taT	19	19	P.1.15	0.004414
ORF1ab/nsp3	882	Y882Y	taC	taT	18	18	AY.20	0.0007
ORF1ab/nsp3	882	Y882Y	taC	taT	18	18	AY.34	0.001745
ORF1ab/nsp3	882	Y882Y	taC	taT	18	18	AY.64	0.010714
ORF1ab/nsp3	882	Y882Y	taC	taT	18	18	AY.70	0.003753
ORF1ab/nsp3	882	Y882Y	taC	taT	17	17	AY.26	0.000481
ORF1ab/nsp3	882	Y882Y	taC	taT	17	17	AY.3.1	0.001449
ORF1ab/nsp3	882	Y882Y	taC	taT	17	17	B.1.1.464	0.025037
ORF1ab/nsp3	882	Y882Y	taC	taT	17	17	B.1.177.7	0.002803
ORF1ab/nsp3	882	Y882Y	taC	taT	17	17	B.1.177.86	0.003119
ORF1ab/nsp3	882	Y882Y	taC	taT	17	17	B.1.575	0.005158
ORF1ab/nsp3	882	Y882Y	taC	taT	16	16	AY.5	0.00033
ORF1ab/nsp3	882	Y882Y	taC	taT	16	16	B.1.221	0.001137
ORF1ab/nsp3	882	Y882Y	taC	taT	15	15	AY.100	0.00069
ORF1ab/nsp3	882	Y882Y	taC	taT	15	15	AY.4.2	0.000325
ORF1ab/nsp3	882	Y882Y	taC	taT	14	14	AY.99.2	0.00129
ORF1ab/nsp3	882	Y882Y	taC	taT	14	14	B.1.1.263	0.021807
ORF1ab/nsp3	882	Y882Y	taC	taT	14	14	B.1.258.17	0.001456
ORF1ab/nsp3	882	Y882C	tAc	tGc	13	13	All	0.000002
ORF1ab/nsp3	882	Y882Y	taC	taT	13	13	AY.4.5	0.001397
ORF1ab/nsp3	882	Y882Y	taC	taT	13	13	B.1.177.54	0.007884
ORF1ab/nsp3	882	Y882Y	taC	taT	12	12	A.28	0.031746
ORF1ab/nsp3	882	Y882Y	taC	taT	12	12	AY.4.1	0.00885
ORF1ab/nsp3	882	Y882Y	taC	taT	12	12	B.1.1.189	0.018154
ORF1ab/nsp3	882	Y882Y	taC	taT	12	12	B.1.258	0.000799
ORF1ab/nsp3	882	Y882Y	taC	taT	11	11	AY.116	0.003155
ORF1ab/nsp3	882	Y882Y	taC	taT	11	11	AY.79	0.013317
ORF1ab/nsp3	882	Y882Y	taC	taT	11	11	B.1.466.2	0.004304
ORF1ab/nsp3	882	Y882Y	taC	taT	11	11	B.1.549	0.079137
ORF1ab/nsp3	882	Y882Y	taC	taT	11	11	B.1.617.1	0.001419
ORF1ab/nsp3	882	Y882Y	taC	taT	11	11	C.37	0.001277
ORF1ab/nsp3	882	Y882Y	taC	taT	10	10	AY.111	0.001832
ORF1ab/nsp3	882	Y882Y	taC	taT	10	10	AY.41	0.002939
ORF1ab/nsp3	882	Y882Y	taC	taT	10	10	AY.54	0.000953
ORF1ab/nsp3	882	Y882Y	taC	taT	10	10	B.1.240	0.002156
ORF1ab/nsp3	882	Y882Y	taC	taT	10	10	P.1.10	0.002695
ORF1ab/nsp3	882	Y882Y	taC	taT	9	9	AY.101	0.004414
ORF1ab/nsp3	882	Y882Y	taC	taT	9	9	AY.106	0.003014
ORF1ab/nsp3	882	Y882Y	taC	taT	9	9	AY.39.1	0.000357
ORF1ab/nsp3	882	Y882Y	taC	taT	9	9	AY.88	0.007958
ORF1ab/nsp3	882	Y882Y	taC	taT	9	9	B.1.396	0.006351
ORF1ab/nsp3	882	Y882Y	taC	taT	8	8	AY.33	0.000534
ORF1ab/nsp3	882	Y882Y	taC	taT	8	8	AY.61	0.000838
ORF1ab/nsp3	882	Y882Y	taC	taT	8	8	AY.85	0.003417
ORF1ab/nsp3	882	Y882Y	taC	taT	8	8	B.1.1.58	0.043011
ORF1ab/nsp3	882	Y882Y	taC	taT	8	8	B.1.177.24	0.010363
ORF1ab/nsp3	882	Y882Y	taC	taT	8	8	B.1.596	0.000697
ORF1ab/nsp3	882	Y882Y	taC	taT	7	7	AU.2	0.016949
ORF1ab/nsp3	882	Y882Y	taC	taT	7	7	AY.119	0.000247
ORF1ab/nsp3	882	Y882Y	taC	taT	7	7	B.1.1.37	0.00135
ORF1ab/nsp3	882	Y882Y	taC	taT	7	7	B.1.36.22	0.008454
ORF1ab/nsp3	882	Y882Y	taC	taT	7	7	B.1.367	0.005547
ORF1ab/nsp3	882	Y882Y	taC	taT	7	7	B.1.595	0.001827
ORF1ab/nsp3	882	Y882Y	taC	taT	7	7	Q.8	0.001154
ORF1ab/nsp3	882	Y882H	Tac	Cac	6	6	All	0.000001
ORF1ab/nsp3	882	Y882Y	taC	taT	6	6	AY.23	0.000418
ORF1ab/nsp3	882	Y882Y	taC	taT	6	6	AY.69	0.00112
ORF1ab/nsp3	882	Y882Y	taC	taT	6	6	B.1.1.291	0.004454
ORF1ab/nsp3	882	Y882Y	taC	taT	6	6	B.1.1.50	0.004073
ORF1ab/nsp3	882	Y882Y	taC	taT	6	6	B.1.177.56	0.004005
ORF1ab/nsp3	882	Y882Y	taC	taT	6	6	B.1.234	0.000792
ORF1ab/nsp3	882	Y882Y	taC	taT	6	6	B.1.567	0.02
ORF1ab/nsp3	882	Y882Y	taC	taT	6	6	B.1.628	0.002114
ORF1ab/nsp3	882	Y882Y	taC	taT	6	6	B.47	0.122449
ORF1ab/nsp3	882	Y882Y	taC	taT	5	5	AY.113	0.000712
ORF1ab/nsp3	882	Y882Y	taC	taT	5	5	AY.13	0.000805
ORF1ab/nsp3	882	Y882Y	taC	taT	5	5	AY.14	0.00044
ORF1ab/nsp3	882	Y882Y	taC	taT	5	5	AY.30	0.001979
ORF1ab/nsp3	882	Y882Y	taC	taT	5	5	AY.40	0.004822
ORF1ab/nsp3	882	Y882Y	taC	taT	5	5	AY.45	0.000608
ORF1ab/nsp3	882	Y882Y	taC	taT	5	5	B.1.1.337	0.017986
ORF1ab/nsp3	882	Y882Y	taC	taT	5	5	B.1.177.5	0.006211
ORF1ab/nsp3	882	Y882Y	taC	taT	5	5	B.1.428	0.005102
ORF1ab/nsp3	882	Y882Y	taC	taT	5	5	N.4	0.021277
ORF1ab/nsp3	882	Y882Y	taC	taT	5	5	Q.1	0.000632
ORF1ab/nsp3	882	Y882F	tAc	tTc	4	4	All	0.000001
ORF1ab/nsp3	882	Y882X	taC	taG	2	4	All	0
ORF1ab/nsp3	882	Y882X	taC	taA	2	4	All	0
ORF1ab/nsp3	882	Y882Y	taC	taT	4	4	AY.19	0.004561
ORF1ab/nsp3	882	Y882Y	taC	taT	4	4	AY.24	0.001724
ORF1ab/nsp3	882	Y882Y	taC	taT	4	4	AY.32	0.00213
ORF1ab/nsp3	882	Y882del	TAC	---	4	4	AY.43	0.000018
ORF1ab/nsp3	882	Y882Y	taC	taT	4	4	AY.46	0.000416
ORF1ab/nsp3	882	Y882Y	taC	taT	4	4	AY.48	0.00186
ORF1ab/nsp3	882	Y882Y	taC	taT	4	4	AY.5.3	0.00135
ORF1ab/nsp3	882	Y882Y	taC	taT	4	4	AY.68	0.001095
ORF1ab/nsp3	882	Y882Y	taC	taT	4	4	AY.9.1	0.000335
ORF1ab/nsp3	882	Y882Y	taC	taT	4	4	AY.98	0.000316
ORF1ab/nsp3	882	Y882C	tAc	tGc	4	4	B.1	0.000037
ORF1ab/nsp3	882	Y882Y	taC	taT	4	4	B.1.1.13	0.142857
ORF1ab/nsp3	882	Y882Y	taC	taT	4	4	B.1.1.159	0.018692
ORF1ab/nsp3	882	Y882Y	taC	taT	4	4	B.1.1.220	0.007435
ORF1ab/nsp3	882	Y882Y	taC	taT	4	4	B.1.1.222	0.000816
ORF1ab/nsp3	882	Y882Y	taC	taT	4	4	B.1.1.348	0.003185
ORF1ab/nsp3	882	Y882Y	taC	taT	4	4	B.1.1.434	0.001394
ORF1ab/nsp3	882	Y882Y	taC	taT	4	4	B.1.1.63	0.001543
ORF1ab/nsp3	882	Y882Y	taC	taT	4	4	B.1.177.15	0.002524
ORF1ab/nsp3	882	Y882Y	taC	taT	4	4	B.1.177.65	0.002661
ORF1ab/nsp3	882	Y882Y	taC	taT	4	4	B.1.36.16	0.005698
ORF1ab/nsp3	882	Y882Y	taC	taT	4	4	B.1.36.29	0.002069
ORF1ab/nsp3	882	Y882Y	taC	taT	4	4	B.1.369	0.001141
ORF1ab/nsp3	882	Y882C	tAc	tGc	4	4	B.1.416	0.005076
ORF1ab/nsp3	882	Y882Y	taC	taT	4	4	C.35	0.003096
ORF1ab/nsp3	882	Y882Y	taC	taT	4	4	P.1.17	0.000647
ORF1ab/nsp3	882	Y882Y	taC	taT	4	4	Q.3	0.00058
ORF1ab/nsp3	882	Y882Y	taC	taT	4	4	Q.7	0.004444
ORF1ab/nsp3	882	Y882N	Tac	Aac	3	3	All	0.000001
ORF1ab/nsp3	882	Y882G	TAc	GGc	3	3	All	0.000001
ORF1ab/nsp3	882	Y882P	TAc	CCc	2	3	All	0
ORF1ab/nsp3	882	Y882P	TAC	CCG	1	3	All	0
ORF1ab/nsp3	882	Y882del	TAC	---	3	3	AY.4	0.000005
ORF1ab/nsp3	882	Y882Y	taC	taT	3	3	AY.46.5	0.000595
ORF1ab/nsp3	882	Y882Y	taC	taT	3	3	AY.58	0.002722
ORF1ab/nsp3	882	Y882Y	taC	taT	3	3	AY.6	0.000123
ORF1ab/nsp3	882	Y882Y	taC	taT	3	3	AY.9	0.000203
ORF1ab/nsp3	882	Y882Y	taC	taT	3	3	B	0.000383
ORF1ab/nsp3	882	Y882del	TAC	---	3	3	B.1	0.000027
ORF1ab/nsp3	882	Y882Y	taC	taT	3	3	B.1.1.225	0.021583
ORF1ab/nsp3	882	Y882Y	taC	taT	3	3	B.1.1.241	0.006211
ORF1ab/nsp3	882	Y882Y	taC	taT	3	3	B.1.1.328	0.050847
ORF1ab/nsp3	882	Y882Y	taC	taT	3	3	B.1.1.347	0.054545
ORF1ab/nsp3	882	Y882Y	taC	taT	3	3	B.1.1.371	0.03125
ORF1ab/nsp3	882	Y882Y	taC	taT	3	3	B.1.126	0.003827
ORF1ab/nsp3	882	Y882Y	taC	taT	3	3	B.1.177.16	0.001993
ORF1ab/nsp3	882	Y882Y	taC	taT	3	3	B.1.351.2	0.000908
ORF1ab/nsp3	882	Y882Y	taC	taT	3	3	B.1.36.1	0.003421
ORF1ab/nsp3	882	Y882Y	taC	taT	3	3	B.1.441	0.028846
ORF1ab/nsp3	882	Y882Y	taC	taT	3	3	B.1.577	0.002062
ORF1ab/nsp3	882	Y882Y	taC	taT	3	3	B.1.599	0.010949
ORF1ab/nsp3	882	Y882Y	taC	taT	3	3	B.1.9	0.018519
ORF1ab/nsp3	882	Y882Y	taC	taT	3	3	C.38	0.024194
ORF1ab/nsp3	882	Y882Y	taC	taT	3	3	P.1.2	0.003468
ORF1ab/nsp3	882	Y882Y	taC	taT	3	3	P.1.7	0.000958
ORF1ab/nsp3	882	Y882Y	taC	taT	3	3	P.2	0.00056
ORF1ab/nsp3	882	Y882Y	taC	taT	2	2		0.111111
ORF1ab/nsp3	882	Y882C	tAc	tGc	2	2		0.111111
ORF1ab/nsp3	882	Y882Y	taC	taT	2	2	A.21	0.00554
ORF1ab/nsp3	882	Y882D	Tac	Gac	2	2	All	0
ORF1ab/nsp3	882	Y882del1	Tac	-ac	1	2	All	0
ORF1ab/nsp3	882	Y882A	TAC	GCG	1	2	All	0
ORF1ab/nsp3	882	Y882A	TAc	GCc	1	2	All	0
ORF1ab/nsp3	882	Y882del1	taC	ta-	1	2	All	0
ORF1ab/nsp3	882	Y882Y	taC	taT	2	2	AY.110	0.000225
ORF1ab/nsp3	882	Y882Y	taC	taT	2	2	AY.121	0.000271
ORF1ab/nsp3	882	Y882Y	taC	taT	2	2	AY.16	0.000759
ORF1ab/nsp3	882	Y882Y	taC	taT	2	2	AY.4.3	0.001684
ORF1ab/nsp3	882	Y882A	TAC	GCG	1	2	AY.43	0.000004
ORF1ab/nsp3	882	Y882P	TAc	CCc	1	2	AY.43	0.000004
ORF1ab/nsp3	882	Y882A	TAc	GCc	1	2	AY.43	0.000004
ORF1ab/nsp3	882	Y882P	TAC	CCG	1	2	AY.43	0.000004
ORF1ab/nsp3	882	Y882Y	taC	taT	2	2	AY.46.3	0.001867
ORF1ab/nsp3	882	Y882Y	taC	taT	2	2	AY.50	0.001599
ORF1ab/nsp3	882	Y882Y	taC	taT	2	2	AY.75.1	0.000361
ORF1ab/nsp3	882	Y882Y	taC	taT	2	2	AY.86	0.00166
ORF1ab/nsp3	882	Y882Y	taC	taT	2	2	AY.90	0.001369
ORF1ab/nsp3	882	Y882Y	taC	taT	2	2	AY.95	0.001522
ORF1ab/nsp3	882	Y882Y	taC	taT	2	2	AY.99	0.002099
ORF1ab/nsp3	882	Y882X	taC	taG	2	2	B.1.1	0.000036
ORF1ab/nsp3	882	Y882Y	taC	taT	2	2	B.1.1.135	0.00939
ORF1ab/nsp3	882	Y882Y	taC	taT	2	2	B.1.1.141	0.004024
ORF1ab/nsp3	882	Y882Y	taC	taT	2	2	B.1.1.277	0.001517
ORF1ab/nsp3	882	Y882Y	taC	taT	2	2	B.1.1.308	0.023529
ORF1ab/nsp3	882	Y882Y	taC	taT	2	2	B.1.1.317	0.000823
ORF1ab/nsp3	882	Y882Y	taC	taT	2	2	B.1.1.318	0.000604
ORF1ab/nsp3	882	Y882Y	taC	taT	2	2	B.1.1.419	0.014815
ORF1ab/nsp3	882	Y882Y	taC	taT	2	2	B.1.13	0.004751
ORF1ab/nsp3	882	Y882Y	taC	taT	2	2	B.1.177.21	0.000153
ORF1ab/nsp3	882	Y882Y	taC	taT	2	2	B.1.177.4	0.000422
ORF1ab/nsp3	882	Y882Y	taC	taT	2	2	B.1.177.44	0.001038
ORF1ab/nsp3	882	Y882del	TAC	---	2	2	B.1.2	0.000018
ORF1ab/nsp3	882	Y882Y	taC	taT	2	2	B.1.206	0.001631
ORF1ab/nsp3	882	Y882Y	taC	taT	2	2	B.1.336	0.004878
ORF1ab/nsp3	882	Y882del	TAC	---	2	2	B.1.36	0.000292
ORF1ab/nsp3	882	Y882Y	taC	taT	2	2	B.1.36.17	0.000988
ORF1ab/nsp3	882	Y882Y	taC	taT	2	2	B.1.36.33	0.015152
ORF1ab/nsp3	882	Y882Y	taC	taT	2	2	B.1.403	0.006536
ORF1ab/nsp3	882	Y882Y	taC	taT	2	2	B.1.459	0.008163
ORF1ab/nsp3	882	Y882Y	taC	taT	2	2	B.1.497	0.00063
ORF1ab/nsp3	882	Y882Y	taC	taT	2	2	B.1.564	0.000852
ORF1ab/nsp3	882	Y882del	TAC	---	2	2	B.1.617.2	0.000008
ORF1ab/nsp3	882	Y882Y	taC	taT	2	2	B.1.8	0.003945
ORF1ab/nsp3	882	Y882Y	taC	taT	2	2	B.1.9.5	0.011364
ORF1ab/nsp3	882	Y882Y	taC	taT	2	2	B.3	0.001661
ORF1ab/nsp3	882	Y882Y	taC	taT	2	2	P.1.1	0.000635
ORF1ab/nsp3	882	Y882Y	taC	taT	2	2	P.1.12	0.000968
ORF1ab/nsp3	882	Y882Y	taC	taT	2	2	P.1.4	0.001953
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	A	0.000387
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	A.19	0.009434
ORF1ab/nsp3	882	Y882del	TAC	---	1	1	A.2.2	0.001689
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	A.2.5.2	0.001572
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	A.23.1	0.000704
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	A.27	0.001656
ORF1ab/nsp3	882	Y882del	TAC	---	1	1	AD.2	0.000219
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	AE.8	0.000489
ORF1ab/nsp3	882	Y882del	TAC	---	1	1	AH.3	0.003802
ORF1ab/nsp3	882	Y882Q	TaC	CaG	1	1	All	0
ORF1ab/nsp3	882	Y882del2	tAC	t--	1	1	All	0
ORF1ab/nsp3	882	Y882E	TaC	GaG	1	1	All	0
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	AM.4	0.003571
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	AP.1	0.001502
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	AT.1	0.005128
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	AY.10	0.00053
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	AY.105	0.000643
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	AY.108	0.001103
ORF1ab/nsp3	882	Y882del	TAC	---	1	1	AY.108	0.001103
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	AY.116.1	0.000311
ORF1ab/nsp3	882	Y882del	TAC	---	1	1	AY.120	0.000037
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	AY.120.1	0.000321
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	AY.120.2	0.001285
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	AY.16.1	0.00047
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	AY.2	0.000356
ORF1ab/nsp3	882	Y882del2	tAC	t--	1	1	AY.25	0.000006
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	AY.28	0.00189
ORF1ab/nsp3	882	Y882del	TAC	---	1	1	AY.3	0.00001
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	AY.34.1	0.00051
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	AY.35	0.000233
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	AY.37	0.000316
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	AY.38	0.000499
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	AY.4.2.1	0.000149
ORF1ab/nsp3	882	Y882Q	TaC	CaG	1	1	AY.43	0.000004
ORF1ab/nsp3	882	Y882H	Tac	Cac	1	1	AY.43	0.000004
ORF1ab/nsp3	882	Y882D	Tac	Gac	1	1	AY.43	0.000004
ORF1ab/nsp3	882	Y882E	TaC	GaG	1	1	AY.43	0.000004
ORF1ab/nsp3	882	Y882H	Tac	Cac	1	1	AY.44	0.000006
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	AY.46.1	0.001027
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	AY.46.2	0.000635
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	AY.46.4	0.000165
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	AY.46.6	0.000072
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	AY.5.4	0.000277
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	AY.52	0.000814
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	AY.55	0.000917
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	AY.59	0.00053
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	AY.60	0.000938
ORF1ab/nsp3	882	Y882del	TAC	---	1	1	AY.66	0.00107
ORF1ab/nsp3	882	Y882del	TAC	---	1	1	AY.67	0.000464
ORF1ab/nsp3	882	Y882del	TAC	---	1	1	AY.7	0.000196
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	AY.71	0.000475
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	AY.78	0.001541
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	AY.84	0.000437
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	AY.91	0.00073
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	AY.92	0.000287
ORF1ab/nsp3	882	Y882P	TAc	CCc	1	1	AY.99	0.001049
ORF1ab/nsp3	882	Y882del	TAC	---	1	1	AY.99	0.001049
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	AZ.1	0.000867
ORF1ab/nsp3	882	Y882F	tAc	tTc	1	1	B.1	0.000009
ORF1ab/nsp3	882	Y882X	taC	taA	1	1	B.1	0.000009
ORF1ab/nsp3	882	Y882H	Tac	Cac	1	1	B.1	0.000009
ORF1ab/nsp3	882	Y882del1	taC	ta-	1	1	B.1	0.000009
ORF1ab/nsp3	882	Y882del1	Tac	-ac	1	1	B.1.1	0.000018
ORF1ab/nsp3	882	Y882del	TAC	---	1	1	B.1.1	0.000018
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.1.1	0.000327
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.1.10	0.001115
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.1.137	0.0125
ORF1ab/nsp3	882	Y882del	TAC	---	1	1	B.1.1.142	0.017544
ORF1ab/nsp3	882	Y882del	TAC	---	1	1	B.1.1.159	0.004673
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.1.176	0.000439
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.1.216	0.00089
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.1.232	0.001815
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.1.240	0.004695
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.1.25	0.000569
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.1.254	0.011236
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.1.261	0.008621
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.1.28	0.000311
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.1.284	0.000107
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.1.285	0.006536
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.1.306	0.000438
ORF1ab/nsp3	882	Y882G	TAc	GGc	1	1	B.1.1.307	0.002532
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.1.307	0.002532
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.1.311	0.000358
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.1.312	0.001912
ORF1ab/nsp3	882	Y882F	tAc	tTc	1	1	B.1.1.318	0.000302
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.1.369	0.000446
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.1.372	0.000689
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.1.397	0.002252
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.1.448	0.002033
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.1.459	0.015385
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.1.46	0.004367
ORF1ab/nsp3	882	Y882del	TAC	---	1	1	B.1.1.519	0.00004
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.1.523	0.001563
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.1.526	0.003546
ORF1ab/nsp3	882	Y882F	tAc	tTc	1	1	B.1.1.7	0.000001
ORF1ab/nsp3	882	Y882C	tAc	tGc	1	1	B.1.1.7	0.000001
ORF1ab/nsp3	882	Y882X	taC	taA	1	1	B.1.1.7	0.000001
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.1.70	0.000341
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.1.8	0.003584
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.1.83	0.00271
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.104	0.00369
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.108	0.005814
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.157	0.002985
ORF1ab/nsp3	882	Y882del	TAC	---	1	1	B.1.160	0.000031
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.160.22	0.006757
ORF1ab/nsp3	882	Y882del	TAC	---	1	1	B.1.177	0.000013
ORF1ab/nsp3	882	Y882del	TAC	---	1	1	B.1.177.16	0.000664
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.177.17	0.000821
ORF1ab/nsp3	882	Y882del	TAC	---	1	1	B.1.177.18	0.00116
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.177.19	0.001431
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.177.23	0.003236
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.177.30	0.002513
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.177.35	0.000691
ORF1ab/nsp3	882	Y882del	TAC	---	1	1	B.1.177.4	0.000211
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.177.55	0.002331
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.177.57	0.000281
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.177.63	0.002703
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.177.69	0.001484
ORF1ab/nsp3	882	Y882del	TAC	---	1	1	B.1.177.7	0.000165
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.177.72	0.00339
ORF1ab/nsp3	882	Y882H	Tac	Cac	1	1	B.1.2	0.000009
ORF1ab/nsp3	882	Y882D	Tac	Gac	1	1	B.1.2	0.000009
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.214.2	0.0006
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.221.3	0.000833
ORF1ab/nsp3	882	Y882N	Tac	Aac	1	1	B.1.258	0.000067
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.311	0.000275
ORF1ab/nsp3	882	Y882del	TAC	---	1	1	B.1.319	0.003049
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.319	0.003049
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.324	0.001605
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.325	0.006897
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.349	0.000715
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.351.3	0.000876
ORF1ab/nsp3	882	Y882G	TAc	GGc	1	1	B.1.356	0.001727
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.36.19	0.009259
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.36.31	0.001751
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.375	0.00082
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.378	0.006849
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.391	0.001127
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.406	0.006061
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.409	0.000781
ORF1ab/nsp3	882	Y882del	TAC	---	1	1	B.1.415	0.014286
ORF1ab/nsp3	882	Y882G	TAc	GGc	1	1	B.1.416	0.001269
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.451	0.008197
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.465	0.003802
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.469	0.00361
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.525	0.000113
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.527	0.003704
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.534	0.0125
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.544	0.006024
ORF1ab/nsp3	882	Y882H	Tac	Cac	1	1	B.1.546	0.003704
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.565	0.00081
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.566	0.019231
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.576	0.000907
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.596.1	0.009346
ORF1ab/nsp3	882	Y882N	Tac	Aac	1	1	B.1.617.2	0.000004
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.617.3	0.002985
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.618	0.004032
ORF1ab/nsp3	882	Y882C	tAc	tGc	1	1	B.1.621	0.000089
ORF1ab/nsp3	882	Y882del	TAC	---	1	1	B.1.621	0.000089
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.623	0.000536
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.625	0.002353
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.627	0.00202
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.1.9.4	0.006135
ORF1ab/nsp3	882	Y882del	TAC	---	1	1	B.15	0.017544
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	B.39	0.002331
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	C.14	0.004329
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	C.18	0.002591
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	C.37.1	0.002618
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	C.4	0.01
ORF1ab/nsp3	882	Y882N	Tac	Aac	1	1	D.2	0.000075
ORF1ab/nsp3	882	Y882H	Tac	Cac	1	1	D.2	0.000075
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	D.3	0.005917
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	L.3	0.003546
ORF1ab/nsp3	882	Y882C	tAc	tGc	1	1	P.1	0.000016
ORF1ab/nsp3	882	Y882F	tAc	tTc	1	1	P.1	0.000016
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	P.1.6	0.001946
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	P.7	0.004367
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	Q.2	0.000613
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	W.1	0.008696
ORF1ab/nsp3	882	Y882Y	taC	taT	1	1	Z.1	0.00289

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.